Gcaud1666.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1666.t2
Unique Name	Gcaud1666.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_866_length_16874_cov_4.313174	contig	NODE_866_length_16874_cov_4.313174:6559..8694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	2.1e-27
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1666	Gcaud1666	Gracilaria caudata M_176_S67 male	gene	NODE_866_length_16874_cov_4.313174 6559..8694 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1666.t2.stop1	Gcaud1666.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_866_length_16874_cov_4.313174 6559..6561 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1666.t2.CDS1	Gcaud1666.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_866_length_16874_cov_4.313174 6559..8694 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1666.t2.exon1	Gcaud1666.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_866_length_16874_cov_4.313174 6559..8694 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1666.t2.start1	Gcaud1666.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_866_length_16874_cov_4.313174 8692..8694 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1666.t2	Gcaud1666.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_866_length_16874_cov_4.313174 6559..8694 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_866_length_16874_cov_4.313174:6559..8694-
coding sequence from alignment at NODE_866_length_16874_cov_4.313174:6559..8694-

mRNA sequence

>Gcaud1666.t2 ID=Gcaud1666.t2|Name=Gcaud1666.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=712bp
LVARDVRRHERNDTALLVPFAPDCGDVQAERVFLYPWHELSREVVDYLLS
DLDANPHWWRHHNALRVSTDVVRTVVNNSYAPHYPQWWLQQGVSVVAACK
DRSQSLLQALPTWLATRGVHQVVLVDWSSSPSIASVLPTDLLHHPKLLLV
SVQQQPQWILSTAYNLAVHVASRTSVMKLDCDTVLQPDFFDSHQLQQHTF
FAGDWHKLDTAASEKLHANGLLYVSRQHFLTVGGYDERITTYGWDDSDIV
SRLSTLATPNSILYDKIAHIPHNASLRVANSQAILPADNPHAAAVEIQRN
RLLITHFHLPPWSASSLHTSWNLRREYRDSISTQPDIIYASAASTVTPAL
HLISDTDALDVSKRAIRLILKRYGVELLPKSLSLHFYKQLIDKLAHASQY
ANVVFSLRGGCVSRLLAHAQIKQATSPGTTQYIFPPDSYIGWRIQEVWHF
PTPECSCKFFSPFLAVEEEITSIWYEAENPMQTSTLLSESRYANNVSSAL
RLFDKLSVHKNVSAQVSRWSASRNESDTPRMMFASIACHSDPSSLTAQQR
QSVRAQLRATSPTQTLLDVLEGLQSKPMQCLLDSPFLQRAELEKYVQSGH
RQPAFDMFTDPAFLEMARKWSPGFLPQPHPHAARRAESLYGAMYFNEAWP
ASTNDLGGSLVPLEHRKLVSKLATRVAALFTGCVSTPFRYLDVYPELAVI
IASFVCSGMCV*

spliced messenger RNA

>Gcaud1666.t2 ID=Gcaud1666.t2|Name=Gcaud1666.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..8694- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTGGCGCGCGATGTGCGGCGCCACGAGCGAAATGATACTGCACTTCT
TGTGCCGTTTGCGCCTGATTGCGGCGACGTGCAGGCGGAGAGAGTGTTTT
TGTATCCGTGGCACGAGCTTTCTCGCGAGGTTGTTGATTACTTACTGTCC
GATCTGGACGCCAATCCGCATTGGTGGCGTCATCACAACGCGTTGCGCGT
CTCCACCGACGTCGTGCGTACCGTCGTGAACAACTCGTATGCCCCGCACT
ACCCGCAGTGGTGGCTTCAACAGGGCGTGTCCGTTGTTGCTGCCTGTAAG
GATCGCTCTCAATCGCTGCTTCAAGCGCTTCCTACCTGGCTCGCTACCCG
TGGCGTTCACCAGGTTGTTCTCGTTGATTGGTCCTCATCGCCATCCATTG
CCTCAGTCTTACCGACTGACTTGCTTCATCACCCAAAACTCCTTCTCGTC
AGCGTGCAGCAGCAGCCGCAATGGATTCTTTCCACCGCTTACAATTTGGC
TGTGCACGTCGCCAGTCGCACTAGTGTTATGAAACTTGACTGTGATACTG
TTCTGCAACCTGACTTTTTCGATTCCCACCAGTTGCAGCAACACACTTTC
TTTGCTGGCGACTGGCACAAGTTGGACACTGCAGCCTCAGAGAAGCTGCA
TGCAAACGGCTTATTGTACGTTTCGCGACAACATTTTCTAACTGTGGGTG
GATATGATGAGCGTATTACAACATACGGTTGGGATGACTCCGATATTGTA
TCGCGACTTTCAACTCTGGCTACTCCGAACAGTATTCTGTACGACAAGAT
TGCGCACATACCACACAATGCCTCTCTTCGCGTCGCCAACTCTCAAGCCA
TTTTGCCGGCCGACAATCCACACGCAGCTGCTGTAGAGATTCAGCGTAAT
CGTCTTTTGATCACACATTTTCACCTGCCGCCATGGAGTGCCTCGTCGTT
GCACACTTCGTGGAACTTGCGCCGCGAGTATCGAGACAGTATTTCGACCC
AGCCAGATATCATTTACGCAAGTGCGGCAAGCACCGTTACTCCAGCCTTG
CATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCATTCG
ACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTATCGC
TCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAGTAC
GCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCTAGC
GCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATATTT
TTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCATTTT
CCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGTAGA
GGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGACAT
CGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCCCTG
CGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGTTTC
ACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGTTTG
CAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAGAGG
CAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCTGTT
GGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAGACT
CCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGCCAT
CGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAATGGC
CAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTGCGA
GAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGGCCA
GCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAGAAA
ACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGATGTG
TATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTTATC
ATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA

protein sequence of Gcaud1666.t2

>Gcaud1666.t2 ID=Gcaud1666.t2|Name=Gcaud1666.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=712bp
LVARDVRRHERNDTALLVPFAPDCGDVQAERVFLYPWHELSREVVDYLLS
DLDANPHWWRHHNALRVSTDVVRTVVNNSYAPHYPQWWLQQGVSVVAACK
DRSQSLLQALPTWLATRGVHQVVLVDWSSSPSIASVLPTDLLHHPKLLLV
SVQQQPQWILSTAYNLAVHVASRTSVMKLDCDTVLQPDFFDSHQLQQHTF
FAGDWHKLDTAASEKLHANGLLYVSRQHFLTVGGYDERITTYGWDDSDIV
SRLSTLATPNSILYDKIAHIPHNASLRVANSQAILPADNPHAAAVEIQRN
RLLITHFHLPPWSASSLHTSWNLRREYRDSISTQPDIIYASAASTVTPAL
HLISDTDALDVSKRAIRLILKRYGVELLPKSLSLHFYKQLIDKLAHASQY
ANVVFSLRGGCVSRLLAHAQIKQATSPGTTQYIFPPDSYIGWRIQEVWHF
PTPECSCKFFSPFLAVEEEITSIWYEAENPMQTSTLLSESRYANNVSSAL
RLFDKLSVHKNVSAQVSRWSASRNESDTPRMMFASIACHSDPSSLTAQQR
QSVRAQLRATSPTQTLLDVLEGLQSKPMQCLLDSPFLQRAELEKYVQSGH
RQPAFDMFTDPAFLEMARKWSPGFLPQPHPHAARRAESLYGAMYFNEAWP
ASTNDLGGSLVPLEHRKLVSKLATRVAALFTGCVSTPFRYLDVYPELAVI
IASFVCSGMCV*

mRNA from alignment at NODE_866_length_16874_cov_4.313174:6559..8694-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1666.t2 ID=Gcaud1666.t2|Name=Gcaud1666.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..8694- (Gracilaria caudata M_176_S67 male)
CTGGTGGCGCGCGATGTGCGGCGCCACGAGCGAAATGATACTGCACTTCT
TGTGCCGTTTGCGCCTGATTGCGGCGACGTGCAGGCGGAGAGAGTGTTTT
TGTATCCGTGGCACGAGCTTTCTCGCGAGGTTGTTGATTACTTACTGTCC
GATCTGGACGCCAATCCGCATTGGTGGCGTCATCACAACGCGTTGCGCGT
CTCCACCGACGTCGTGCGTACCGTCGTGAACAACTCGTATGCCCCGCACT
ACCCGCAGTGGTGGCTTCAACAGGGCGTGTCCGTTGTTGCTGCCTGTAAG
GATCGCTCTCAATCGCTGCTTCAAGCGCTTCCTACCTGGCTCGCTACCCG
TGGCGTTCACCAGGTTGTTCTCGTTGATTGGTCCTCATCGCCATCCATTG
CCTCAGTCTTACCGACTGACTTGCTTCATCACCCAAAACTCCTTCTCGTC
AGCGTGCAGCAGCAGCCGCAATGGATTCTTTCCACCGCTTACAATTTGGC
TGTGCACGTCGCCAGTCGCACTAGTGTTATGAAACTTGACTGTGATACTG
TTCTGCAACCTGACTTTTTCGATTCCCACCAGTTGCAGCAACACACTTTC
TTTGCTGGCGACTGGCACAAGTTGGACACTGCAGCCTCAGAGAAGCTGCA
TGCAAACGGCTTATTGTACGTTTCGCGACAACATTTTCTAACTGTGGGTG
GATATGATGAGCGTATTACAACATACGGTTGGGATGACTCCGATATTGTA
TCGCGACTTTCAACTCTGGCTACTCCGAACAGTATTCTGTACGACAAGAT
TGCGCACATACCACACAATGCCTCTCTTCGCGTCGCCAACTCTCAAGCCA
TTTTGCCGGCCGACAATCCACACGCAGCTGCTGTAGAGATTCAGCGTAAT
CGTCTTTTGATCACACATTTTCACCTGCCGCCATGGAGTGCCTCGTCGTT
GCACACTTCGTGGAACTTGCGCCGCGAGTATCGAGACAGTATTTCGACCC
AGCCAGATATCATTTACGCAAGTGCGGCAAGCACCGTTACTCCAGCCTTG
CATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCATTCG
ACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTATCGC
TCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAGTAC
GCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCTAGC
GCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATATTT
TTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCATTTT
CCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGTAGA
GGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGACAT
CGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCCCTG
CGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGTTTC
ACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGTTTG
CAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAGAGG
CAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCTGTT
GGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAGACT
CCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGCCAT
CGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAATGGC
CAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTGCGA
GAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGGCCA
GCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAGAAA
ACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGATGTG
TATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTTATC
ATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA

Coding sequence (CDS) from alignment at NODE_866_length_16874_cov_4.313174:6559..8694-

>Gcaud1666.t2 ID=Gcaud1666.t2|Name=Gcaud1666.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2136bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:6559..8694- (Gracilaria caudata M_176_S67 male)
CTGGTGGCGCGCGATGTGCGGCGCCACGAGCGAAATGATACTGCACTTCT
TGTGCCGTTTGCGCCTGATTGCGGCGACGTGCAGGCGGAGAGAGTGTTTT
TGTATCCGTGGCACGAGCTTTCTCGCGAGGTTGTTGATTACTTACTGTCC
GATCTGGACGCCAATCCGCATTGGTGGCGTCATCACAACGCGTTGCGCGT
CTCCACCGACGTCGTGCGTACCGTCGTGAACAACTCGTATGCCCCGCACT
ACCCGCAGTGGTGGCTTCAACAGGGCGTGTCCGTTGTTGCTGCCTGTAAG
GATCGCTCTCAATCGCTGCTTCAAGCGCTTCCTACCTGGCTCGCTACCCG
TGGCGTTCACCAGGTTGTTCTCGTTGATTGGTCCTCATCGCCATCCATTG
CCTCAGTCTTACCGACTGACTTGCTTCATCACCCAAAACTCCTTCTCGTC
AGCGTGCAGCAGCAGCCGCAATGGATTCTTTCCACCGCTTACAATTTGGC
TGTGCACGTCGCCAGTCGCACTAGTGTTATGAAACTTGACTGTGATACTG
TTCTGCAACCTGACTTTTTCGATTCCCACCAGTTGCAGCAACACACTTTC
TTTGCTGGCGACTGGCACAAGTTGGACACTGCAGCCTCAGAGAAGCTGCA
TGCAAACGGCTTATTGTACGTTTCGCGACAACATTTTCTAACTGTGGGTG
GATATGATGAGCGTATTACAACATACGGTTGGGATGACTCCGATATTGTA
TCGCGACTTTCAACTCTGGCTACTCCGAACAGTATTCTGTACGACAAGAT
TGCGCACATACCACACAATGCCTCTCTTCGCGTCGCCAACTCTCAAGCCA
TTTTGCCGGCCGACAATCCACACGCAGCTGCTGTAGAGATTCAGCGTAAT
CGTCTTTTGATCACACATTTTCACCTGCCGCCATGGAGTGCCTCGTCGTT
GCACACTTCGTGGAACTTGCGCCGCGAGTATCGAGACAGTATTTCGACCC
AGCCAGATATCATTTACGCAAGTGCGGCAAGCACCGTTACTCCAGCCTTG
CATCTAATTTCGGATACCGATGCCTTGGATGTGTCCAAGCGAGCCATTCG
ACTCATACTCAAGAGGTATGGCGTCGAATTACTGCCCAAGAGCTTATCGC
TCCACTTCTACAAACAGCTTATTGATAAGCTCGCCCATGCTTCGCAGTAC
GCCAATGTTGTCTTTTCTCTTCGCGGTGGCTGTGTTTCTCGTCTTCTAGC
GCATGCGCAAATCAAACAAGCCACTTCTCCTGGCACCACTCAATATATTT
TTCCACCGGACTCATATATCGGCTGGCGAATACAAGAAGTGTGGCATTTT
CCAACCCCAGAATGCTCCTGCAAATTCTTCTCCCCGTTTTTGGCGGTAGA
GGAGGAAATAACTTCCATATGGTATGAGGCGGAGAATCCGATGCAGACAT
CGACGCTTTTATCTGAGTCTCGATACGCGAATAATGTGTCTTCTGCCCTG
CGTTTGTTCGACAAGCTTTCTGTACACAAGAATGTTTCTGCGCAGGTTTC
ACGTTGGTCCGCGTCGCGCAATGAATCTGATACACCACGGATGATGTTTG
CAAGCATTGCGTGCCATTCTGATCCATCGAGTCTCACCGCACAGCAGAGG
CAGTCTGTGAGAGCGCAGCTGCGAGCCACTTCGCCCACTCAGACCCTGTT
GGATGTATTGGAAGGCTTGCAGTCTAAGCCAATGCAATGCTTGCTAGACT
CCCCTTTTTTGCAACGCGCAGAGTTGGAGAAGTACGTTCAGTCAGGCCAT
CGGCAGCCGGCTTTTGATATGTTCACCGATCCTGCATTCTTAGAAATGGC
CAGGAAATGGAGTCCAGGCTTTTTGCCACAGCCGCACCCGCACGCTGCGA
GAAGAGCTGAATCGCTGTATGGTGCTATGTACTTCAACGAGGCATGGCCA
GCGTCAACAAACGATTTGGGCGGTTCCTTGGTCCCGTTAGAACATAGAAA
ACTGGTTTCCAAGTTGGCAACCCGTGTTGCCGCCTTGTTTACTGGATGTG
TATCAACTCCTTTTCGATATCTCGATGTTTATCCGGAACTAGCAGTTATC
ATTGCCAGCTTTGTTTGTTCCGGGATGTGTGTCTGA