Gcaud1665.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1665.t1
Unique Name	Gcaud1665.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	692

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_866_length_16874_cov_4.313174	contig	NODE_866_length_16874_cov_4.313174:4108..6183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926550.CLDAP_23770
PFAMs	PD40
Max annot lvl	2\|Bacteria
KEGG ko	ko:K03641
KEGG TC	2.C.1.2
Evalue	1.5e-09
EggNOG OGs	COG0823@1\|root,COG0823@2\|Bacteria
Description	Involved in the tonB-independent uptake of proteins
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1665	Gcaud1665	Gracilaria caudata M_176_S67 male	gene	NODE_866_length_16874_cov_4.313174 4108..6183 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1665.t1.start1	Gcaud1665.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_866_length_16874_cov_4.313174 4108..4110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1665.t1.CDS1	Gcaud1665.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_866_length_16874_cov_4.313174 4108..6183 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1665.t1.exon1	Gcaud1665.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_866_length_16874_cov_4.313174 4108..6183 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1665.t1.stop1	Gcaud1665.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_866_length_16874_cov_4.313174 6181..6183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1665.t1	Gcaud1665.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_866_length_16874_cov_4.313174 4108..6183 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+
coding sequence from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+

mRNA sequence

>Gcaud1665.t1 ID=Gcaud1665.t1|Name=Gcaud1665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=692bp
MTSRRELRESVGVPTQERLLRLERALAAAILQERYSDAANLRDALQAART
SDPLLAKRAELQAAVDGERFLDAARLRDELAALTERFSKRDAGRRVDRII
VLRGRAEPDKALRAATVSRDGAVQLGLVPEISERNAPPRVYLQPTWSPSG
DFVAVTEISFSIDLSRLGRGVAIADSSARIIVMNAFDGSVVRSVPFAKPP
FFYFWSPDGRRLTLLSNGSGTSAAAVALSAIQVVAPPGGGGLDMDTVTGP
LATGHPFLYDICPRDSNKTIVHMGDKSTVALVPISSFGHEHKCMTTKAGS
FGAPQWHPNAGKDGREVVLFVERDRPFKRDLAASHAPLRNKTNPEQLQRQ
QEERDDDNIDADKAEAFEKFLTNSTSLLESVLRKGAESLGLTPKRNKNES
ASRKDDPVPNASAQEEEDDRFKEKIRRLLPKRPSPIRDQQWSEPYVTESM
ANRLVMCDIDNPDLKRVIARFTGIMAFKLSPNGNYLATLVTNPTTGADEL
TLCTGDFSPDSVAETERLNRLKIQSEADIILSTPYTRVLAFFWSPDSSKL
LFLTSLRGSRVGAAQWATFDLESNKVVRYEKFIMSGIYMHCLNFFDQFAT
SMTPWSPDSDAFCYPGRALTPAEIEKDLNPAPTAAPALSALFMQRDSSTE
GKRFNARVQKVPITTNSVGKVEPEEPVTIVENVEYACWSPC*

spliced messenger RNA

>Gcaud1665.t1 ID=Gcaud1665.t1|Name=Gcaud1665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCACGCCGCGAGCTTCGCGAATCCGTTGGCGTCCCCACACAGGA
GCGCTTACTAAGACTTGAGCGCGCCCTCGCTGCAGCTATTCTACAGGAGC
GCTATTCGGACGCCGCTAATTTGCGCGATGCGCTTCAGGCTGCCCGCACT
TCTGATCCGTTGCTCGCCAAGCGCGCCGAACTTCAGGCCGCTGTCGACGG
CGAACGTTTTCTCGATGCGGCTCGACTACGGGATGAGCTTGCTGCCTTGA
CTGAACGCTTCTCTAAACGTGATGCTGGAAGACGTGTGGACCGTATCATA
GTCCTTCGCGGCCGTGCCGAACCAGACAAGGCGTTGCGCGCAGCAACCGT
GTCCAGGGACGGCGCCGTGCAGTTGGGACTCGTTCCTGAGATTTCAGAGA
GGAATGCACCTCCGAGGGTGTATCTGCAACCTACCTGGTCACCGAGCGGC
GATTTTGTTGCTGTCACAGAGATATCCTTCAGTATAGACTTGAGCAGACT
TGGCAGAGGAGTGGCTATAGCCGATAGTTCTGCTAGAATTATTGTAATGA
ATGCTTTTGACGGAAGCGTTGTTCGCTCTGTTCCCTTCGCCAAGCCGCCG
TTCTTTTACTTTTGGAGCCCGGATGGTCGCCGTCTGACACTTCTTTCGAA
TGGTTCTGGGACATCCGCGGCTGCAGTTGCCCTGTCCGCTATTCAGGTTG
TTGCTCCCCCGGGAGGCGGTGGTCTTGACATGGATACAGTTACTGGACCC
CTTGCTACGGGACACCCTTTCCTTTACGACATATGCCCACGTGATTCAAA
CAAGACAATTGTTCATATGGGAGACAAGTCAACAGTTGCCTTGGTTCCCA
TTAGCTCTTTTGGCCATGAGCACAAGTGCATGACTACAAAGGCAGGTTCA
TTCGGCGCTCCACAGTGGCACCCAAACGCCGGCAAGGACGGAAGAGAGGT
TGTTTTGTTTGTTGAGCGAGATAGGCCTTTCAAAAGGGATCTTGCTGCAA
GTCATGCTCCTTTACGAAACAAAACCAATCCAGAACAGTTGCAAAGGCAA
CAGGAAGAGAGGGACGACGACAACATCGATGCTGACAAGGCCGAAGCGTT
CGAAAAGTTTCTTACGAACAGCACTTCTCTCCTTGAGAGCGTTCTGCGCA
AGGGCGCAGAATCCCTCGGGCTGACACCGAAACGGAACAAAAATGAATCC
GCATCTCGAAAAGATGACCCCGTCCCCAATGCCTCTGCGCAGGAAGAAGA
AGACGATCGGTTCAAAGAGAAAATACGCCGCCTACTACCGAAGAGGCCCT
CGCCAATTCGCGACCAACAGTGGAGTGAACCGTACGTCACGGAGAGCATG
GCCAACCGTCTCGTGATGTGCGACATTGATAATCCCGACTTGAAACGAGT
GATTGCCCGCTTTACTGGGATCATGGCCTTCAAGCTATCGCCAAACGGGA
ACTATCTAGCTACGTTGGTCACCAACCCTACCACAGGGGCAGATGAGCTC
ACGCTATGCACTGGAGATTTCTCTCCTGACTCCGTTGCTGAAACAGAACG
ACTAAATCGTCTGAAGATTCAAAGTGAGGCCGATATCATACTCAGCACTC
CATACACGAGGGTACTTGCCTTTTTTTGGAGCCCTGACTCCTCCAAATTA
TTATTCCTCACATCGCTACGCGGCAGTCGAGTCGGAGCAGCGCAATGGGC
GACTTTTGACCTTGAGTCGAACAAAGTCGTGCGGTATGAGAAGTTCATCA
TGTCTGGTATATACATGCATTGCCTGAATTTCTTTGACCAGTTTGCAACG
TCTATGACGCCGTGGTCACCAGATTCGGATGCCTTTTGCTATCCGGGCAG
GGCCCTTACACCTGCGGAGATTGAAAAAGACCTGAACCCTGCCCCAACGG
CCGCTCCTGCTTTGTCCGCCCTCTTTATGCAGAGAGATAGTTCGACCGAA
GGAAAGCGATTTAATGCACGAGTTCAAAAGGTTCCTATCACAACCAATTC
CGTGGGAAAGGTTGAACCAGAGGAACCGGTTACAATTGTTGAGAACGTAG
AATATGCCTGTTGGAGCCCTTGTTGA

protein sequence of Gcaud1665.t1

>Gcaud1665.t1 ID=Gcaud1665.t1|Name=Gcaud1665.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=692bp
MTSRRELRESVGVPTQERLLRLERALAAAILQERYSDAANLRDALQAART
SDPLLAKRAELQAAVDGERFLDAARLRDELAALTERFSKRDAGRRVDRII
VLRGRAEPDKALRAATVSRDGAVQLGLVPEISERNAPPRVYLQPTWSPSG
DFVAVTEISFSIDLSRLGRGVAIADSSARIIVMNAFDGSVVRSVPFAKPP
FFYFWSPDGRRLTLLSNGSGTSAAAVALSAIQVVAPPGGGGLDMDTVTGP
LATGHPFLYDICPRDSNKTIVHMGDKSTVALVPISSFGHEHKCMTTKAGS
FGAPQWHPNAGKDGREVVLFVERDRPFKRDLAASHAPLRNKTNPEQLQRQ
QEERDDDNIDADKAEAFEKFLTNSTSLLESVLRKGAESLGLTPKRNKNES
ASRKDDPVPNASAQEEEDDRFKEKIRRLLPKRPSPIRDQQWSEPYVTESM
ANRLVMCDIDNPDLKRVIARFTGIMAFKLSPNGNYLATLVTNPTTGADEL
TLCTGDFSPDSVAETERLNRLKIQSEADIILSTPYTRVLAFFWSPDSSKL
LFLTSLRGSRVGAAQWATFDLESNKVVRYEKFIMSGIYMHCLNFFDQFAT
SMTPWSPDSDAFCYPGRALTPAEIEKDLNPAPTAAPALSALFMQRDSSTE
GKRFNARVQKVPITTNSVGKVEPEEPVTIVENVEYACWSPC*

mRNA from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1665.t1 ID=Gcaud1665.t1|Name=Gcaud1665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2076bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+ (Gracilaria caudata M_176_S67 male)
ATGACCTCACGCCGCGAGCTTCGCGAATCCGTTGGCGTCCCCACACAGGA
GCGCTTACTAAGACTTGAGCGCGCCCTCGCTGCAGCTATTCTACAGGAGC
GCTATTCGGACGCCGCTAATTTGCGCGATGCGCTTCAGGCTGCCCGCACT
TCTGATCCGTTGCTCGCCAAGCGCGCCGAACTTCAGGCCGCTGTCGACGG
CGAACGTTTTCTCGATGCGGCTCGACTACGGGATGAGCTTGCTGCCTTGA
CTGAACGCTTCTCTAAACGTGATGCTGGAAGACGTGTGGACCGTATCATA
GTCCTTCGCGGCCGTGCCGAACCAGACAAGGCGTTGCGCGCAGCAACCGT
GTCCAGGGACGGCGCCGTGCAGTTGGGACTCGTTCCTGAGATTTCAGAGA
GGAATGCACCTCCGAGGGTGTATCTGCAACCTACCTGGTCACCGAGCGGC
GATTTTGTTGCTGTCACAGAGATATCCTTCAGTATAGACTTGAGCAGACT
TGGCAGAGGAGTGGCTATAGCCGATAGTTCTGCTAGAATTATTGTAATGA
ATGCTTTTGACGGAAGCGTTGTTCGCTCTGTTCCCTTCGCCAAGCCGCCG
TTCTTTTACTTTTGGAGCCCGGATGGTCGCCGTCTGACACTTCTTTCGAA
TGGTTCTGGGACATCCGCGGCTGCAGTTGCCCTGTCCGCTATTCAGGTTG
TTGCTCCCCCGGGAGGCGGTGGTCTTGACATGGATACAGTTACTGGACCC
CTTGCTACGGGACACCCTTTCCTTTACGACATATGCCCACGTGATTCAAA
CAAGACAATTGTTCATATGGGAGACAAGTCAACAGTTGCCTTGGTTCCCA
TTAGCTCTTTTGGCCATGAGCACAAGTGCATGACTACAAAGGCAGGTTCA
TTCGGCGCTCCACAGTGGCACCCAAACGCCGGCAAGGACGGAAGAGAGGT
TGTTTTGTTTGTTGAGCGAGATAGGCCTTTCAAAAGGGATCTTGCTGCAA
GTCATGCTCCTTTACGAAACAAAACCAATCCAGAACAGTTGCAAAGGCAA
CAGGAAGAGAGGGACGACGACAACATCGATGCTGACAAGGCCGAAGCGTT
CGAAAAGTTTCTTACGAACAGCACTTCTCTCCTTGAGAGCGTTCTGCGCA
AGGGCGCAGAATCCCTCGGGCTGACACCGAAACGGAACAAAAATGAATCC
GCATCTCGAAAAGATGACCCCGTCCCCAATGCCTCTGCGCAGGAAGAAGA
AGACGATCGGTTCAAAGAGAAAATACGCCGCCTACTACCGAAGAGGCCCT
CGCCAATTCGCGACCAACAGTGGAGTGAACCGTACGTCACGGAGAGCATG
GCCAACCGTCTCGTGATGTGCGACATTGATAATCCCGACTTGAAACGAGT
GATTGCCCGCTTTACTGGGATCATGGCCTTCAAGCTATCGCCAAACGGGA
ACTATCTAGCTACGTTGGTCACCAACCCTACCACAGGGGCAGATGAGCTC
ACGCTATGCACTGGAGATTTCTCTCCTGACTCCGTTGCTGAAACAGAACG
ACTAAATCGTCTGAAGATTCAAAGTGAGGCCGATATCATACTCAGCACTC
CATACACGAGGGTACTTGCCTTTTTTTGGAGCCCTGACTCCTCCAAATTA
TTATTCCTCACATCGCTACGCGGCAGTCGAGTCGGAGCAGCGCAATGGGC
GACTTTTGACCTTGAGTCGAACAAAGTCGTGCGGTATGAGAAGTTCATCA
TGTCTGGTATATACATGCATTGCCTGAATTTCTTTGACCAGTTTGCAACG
TCTATGACGCCGTGGTCACCAGATTCGGATGCCTTTTGCTATCCGGGCAG
GGCCCTTACACCTGCGGAGATTGAAAAAGACCTGAACCCTGCCCCAACGG
CCGCTCCTGCTTTGTCCGCCCTCTTTATGCAGAGAGATAGTTCGACCGAA
GGAAAGCGATTTAATGCACGAGTTCAAAAGGTTCCTATCACAACCAATTC
CGTGGGAAAGGTTGAACCAGAGGAACCGGTTACAATTGTTGAGAACGTAG
AATATGCCTGTTGGAGCCCTTGTTGA

Coding sequence (CDS) from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+

>Gcaud1665.t1 ID=Gcaud1665.t1|Name=Gcaud1665.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2076bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:4108..6183+ (Gracilaria caudata M_176_S67 male)
ATGACCTCACGCCGCGAGCTTCGCGAATCCGTTGGCGTCCCCACACAGGA
GCGCTTACTAAGACTTGAGCGCGCCCTCGCTGCAGCTATTCTACAGGAGC
GCTATTCGGACGCCGCTAATTTGCGCGATGCGCTTCAGGCTGCCCGCACT
TCTGATCCGTTGCTCGCCAAGCGCGCCGAACTTCAGGCCGCTGTCGACGG
CGAACGTTTTCTCGATGCGGCTCGACTACGGGATGAGCTTGCTGCCTTGA
CTGAACGCTTCTCTAAACGTGATGCTGGAAGACGTGTGGACCGTATCATA
GTCCTTCGCGGCCGTGCCGAACCAGACAAGGCGTTGCGCGCAGCAACCGT
GTCCAGGGACGGCGCCGTGCAGTTGGGACTCGTTCCTGAGATTTCAGAGA
GGAATGCACCTCCGAGGGTGTATCTGCAACCTACCTGGTCACCGAGCGGC
GATTTTGTTGCTGTCACAGAGATATCCTTCAGTATAGACTTGAGCAGACT
TGGCAGAGGAGTGGCTATAGCCGATAGTTCTGCTAGAATTATTGTAATGA
ATGCTTTTGACGGAAGCGTTGTTCGCTCTGTTCCCTTCGCCAAGCCGCCG
TTCTTTTACTTTTGGAGCCCGGATGGTCGCCGTCTGACACTTCTTTCGAA
TGGTTCTGGGACATCCGCGGCTGCAGTTGCCCTGTCCGCTATTCAGGTTG
TTGCTCCCCCGGGAGGCGGTGGTCTTGACATGGATACAGTTACTGGACCC
CTTGCTACGGGACACCCTTTCCTTTACGACATATGCCCACGTGATTCAAA
CAAGACAATTGTTCATATGGGAGACAAGTCAACAGTTGCCTTGGTTCCCA
TTAGCTCTTTTGGCCATGAGCACAAGTGCATGACTACAAAGGCAGGTTCA
TTCGGCGCTCCACAGTGGCACCCAAACGCCGGCAAGGACGGAAGAGAGGT
TGTTTTGTTTGTTGAGCGAGATAGGCCTTTCAAAAGGGATCTTGCTGCAA
GTCATGCTCCTTTACGAAACAAAACCAATCCAGAACAGTTGCAAAGGCAA
CAGGAAGAGAGGGACGACGACAACATCGATGCTGACAAGGCCGAAGCGTT
CGAAAAGTTTCTTACGAACAGCACTTCTCTCCTTGAGAGCGTTCTGCGCA
AGGGCGCAGAATCCCTCGGGCTGACACCGAAACGGAACAAAAATGAATCC
GCATCTCGAAAAGATGACCCCGTCCCCAATGCCTCTGCGCAGGAAGAAGA
AGACGATCGGTTCAAAGAGAAAATACGCCGCCTACTACCGAAGAGGCCCT
CGCCAATTCGCGACCAACAGTGGAGTGAACCGTACGTCACGGAGAGCATG
GCCAACCGTCTCGTGATGTGCGACATTGATAATCCCGACTTGAAACGAGT
GATTGCCCGCTTTACTGGGATCATGGCCTTCAAGCTATCGCCAAACGGGA
ACTATCTAGCTACGTTGGTCACCAACCCTACCACAGGGGCAGATGAGCTC
ACGCTATGCACTGGAGATTTCTCTCCTGACTCCGTTGCTGAAACAGAACG
ACTAAATCGTCTGAAGATTCAAAGTGAGGCCGATATCATACTCAGCACTC
CATACACGAGGGTACTTGCCTTTTTTTGGAGCCCTGACTCCTCCAAATTA
TTATTCCTCACATCGCTACGCGGCAGTCGAGTCGGAGCAGCGCAATGGGC
GACTTTTGACCTTGAGTCGAACAAAGTCGTGCGGTATGAGAAGTTCATCA
TGTCTGGTATATACATGCATTGCCTGAATTTCTTTGACCAGTTTGCAACG
TCTATGACGCCGTGGTCACCAGATTCGGATGCCTTTTGCTATCCGGGCAG
GGCCCTTACACCTGCGGAGATTGAAAAAGACCTGAACCCTGCCCCAACGG
CCGCTCCTGCTTTGTCCGCCCTCTTTATGCAGAGAGATAGTTCGACCGAA
GGAAAGCGATTTAATGCACGAGTTCAAAAGGTTCCTATCACAACCAATTC
CGTGGGAAAGGTTGAACCAGAGGAACCGGTTACAATTGTTGAGAACGTAG
AATATGCCTGTTGGAGCCCTTGTTGA