Gcaud1663.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1663.t1
Unique Name	Gcaud1663.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	652

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:65968..67923 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708220.1
Preferred name	SLY1
PFAMs	Sec1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19998
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue	3.53e-149
EggNOG OGs	COG5158@1\|root,KOG1301@2759\|Eukaryota
Description	vesicle docking involved in exocytosis
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1663	Gcaud1663	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 65968..67923 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1663.t1.start1	Gcaud1663.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 65968..65970 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1663.t1.CDS1	Gcaud1663.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 65968..67923 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1663.t1.exon1	Gcaud1663.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 65968..67923 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1663.t1.stop1	Gcaud1663.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 67921..67923 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1663.t1	Gcaud1663.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 65968..67923 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+

mRNA sequence

>Gcaud1663.t1 ID=Gcaud1663.t1|Name=Gcaud1663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=652bp
MDSSLHLPGLSVRTRQRDALLQMLSACTAGPDALEDSNDVWKVLIYDATG
RDIIAPLLQVADLRAAGVTLHMMLHAARQPIPDVPAVYFVEPTKENMNRI
SSDSAKGFYASLWINFTDSISRDLLESFADMVATVSNPSPFAGRIARVYD
MYTSFLSLEDSLFHLNLPGSYVKLNAPNVTDSEVEAVIKSIVDRLFCMIV
TLGVAPVIRAQRGGPALHVARMLEQRIREHLISSNNVFSETVSFAAAPAE
RPLLVIVDRSIDMSVMLHHTWTYQALAHDTLGMKLNRVTVPLKDENSAAG
EVRKRVFDLDKSDSFWDKNAGLPFPMVADAVENALQAYQQEVAELNRSAG
AISDEPIDPATASLKEGANTNKLAAAISSIPELSKKKRTIDLHTNIATAI
LDQIKDRGLDGFFQVEEELLSRPSTFDVERIMALLRNMKGTPTDKLRLFL
VYYLCVDNASESELKRCVEALEAAGCSDLRAYAYLKSIRAFTKKVSAIPK
APLTASTSIGSGYALSVLDTLSQVASNVNKLIISADKAFAAARIVQTLMD
RKGDASVLEEYETLDPKAPKGTIPPAATRLCQQAVLFVVGPGNYIEFQNC
QDQVCSKVVQDGKNTKFVPNGKTVIYGATELCSGAEFVEQLQRSGAASST
P*

spliced messenger RNA

>Gcaud1663.t1 ID=Gcaud1663.t1|Name=Gcaud1663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atggattcttcactgcatcttcccggcctctccgtgcgaactcgccagcg
agatgcgcttctgcagatgctttcggcatgcactgccggacctgacgctc
ttgaggacagtaacgatgtttggaaagttctaatatatgatgccactggc
agagacatcattgctccgttgcttcaggtagccgatttaagagctgccgg
tgtaacacttcacatgatgctccatgcagcccgccaaccaattcccgatg
ttccggctgtgtattttgtggaacctacgaaggagaatatgaaccgaatt
tctagtgattctgccaaagggttctatgcaagtctatggatcaactttac
cgactcaatctccagagatcttctcgaaagctttgctgatatggtggcaa
ccgtttctaatcctagcccgtttgccggtagaatagcgcgtgtgtacgac
atgtacacatcctttctttctcttgaggatagtttattccatttgaatct
tccgggttcctatgtcaaactgaatgccccgaatgttacagattccgaag
tggaagcagttatcaagtccatcgttgaccggctgttttgcatgatcgtt
acccttggtgttgcgcccgtaatccgtgctcagaggggagggcctgcgtt
gcacgtagcacgcatgctcgaacagcgtatccgtgagcatcttatttcca
gcaataacgttttctcagagaccgtgtccttcgccgctgcaccagcagaa
cggcctttattggttatcgtcgatcgcagcattgatatgtcagtgatgct
gcatcacacatggacataccaagcccttgcgcacgatactctgggcatga
aactgaatcgagtgaccgtcccactcaaagatgaaaatagtgctgcgggt
gaagttcggaaacgggtgttcgatttggataaaagtgatagtttctggga
taaaaacgctggacttccatttcctatggtggccgatgctgttgaaaatg
cgcttcaagcctatcaacaagaagtggcagaattgaatcgatcggctgga
gctatcagcgacgaacccattgatccagctactgcttcgttaaaggaagg
tgcaaacacgaacaaactagctgcagctatctcaagtattcctgaacttt
caaagaagaaacgaactattgatcttcacacgaatattgctactgcgatt
ctggatcaaattaaggaccgaggtctcgatgggttctttcaggtagaaga
agaactgctttcgcgaccgagcactttcgatgtggaacgcattatggcct
tgctgcggaacatgaagggaacaccgacggacaaactaagactgtttctg
gtctactatctatgcgtggacaatgcgagtgaaagcgaactgaagagatg
tgtcgaagcgcttgaggccgctggatgttcggacctacgtgcgtatgcat
atctaaagagtatcagagcatttacgaagaaggtatctgctattcccaag
gctccgttaactgcttcaacgagtataggaagcggttatgctctttctgt
attagataccctatcgcaagtggcaagtaacgtcaataagttgataatat
ctgcagataaagcattcgcagccgcacgaatcgtgcaaaccttgatggac
cggaaaggggatgctagtgttttggaagagtacgagacactggatccaaa
agccccaaagggtaccattccacctgcagcaacaagactctgccagcagg
ccgtattgtttgttgtgggacccggaaattatatcgagtttcaaaactgt
caagatcaagtctgctccaaggttgtccaagacggcaagaacactaagtt
tgtcccaaatgggaagacagttatatatggagcaacggagttgtgctccg
gtgctgagtttgttgaacaactgcaaaggagcggggcggcatcatcaact
ccttaa

protein sequence of Gcaud1663.t1

>Gcaud1663.t1 ID=Gcaud1663.t1|Name=Gcaud1663.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=652bp
MDSSLHLPGLSVRTRQRDALLQMLSACTAGPDALEDSNDVWKVLIYDATG
RDIIAPLLQVADLRAAGVTLHMMLHAARQPIPDVPAVYFVEPTKENMNRI
SSDSAKGFYASLWINFTDSISRDLLESFADMVATVSNPSPFAGRIARVYD
MYTSFLSLEDSLFHLNLPGSYVKLNAPNVTDSEVEAVIKSIVDRLFCMIV
TLGVAPVIRAQRGGPALHVARMLEQRIREHLISSNNVFSETVSFAAAPAE
RPLLVIVDRSIDMSVMLHHTWTYQALAHDTLGMKLNRVTVPLKDENSAAG
EVRKRVFDLDKSDSFWDKNAGLPFPMVADAVENALQAYQQEVAELNRSAG
AISDEPIDPATASLKEGANTNKLAAAISSIPELSKKKRTIDLHTNIATAI
LDQIKDRGLDGFFQVEEELLSRPSTFDVERIMALLRNMKGTPTDKLRLFL
VYYLCVDNASESELKRCVEALEAAGCSDLRAYAYLKSIRAFTKKVSAIPK
APLTASTSIGSGYALSVLDTLSQVASNVNKLIISADKAFAAARIVQTLMD
RKGDASVLEEYETLDPKAPKGTIPPAATRLCQQAVLFVVGPGNYIEFQNC
QDQVCSKVVQDGKNTKFVPNGKTVIYGATELCSGAEFVEQLQRSGAASST
P*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1663.t1 ID=Gcaud1663.t1|Name=Gcaud1663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+ (Gracilaria caudata M_176_S67 male)
atggattcttcactgcatcttcccggcctctccgtgcgaactcgccagcg
agatgcgcttctgcagatgctttcggcatgcactgccggacctgacgctc
ttgaggacagtaacgatgtttggaaagttctaatatatgatgccactggc
agagacatcattgctccgttgcttcaggtagccgatttaagagctgccgg
tgtaacacttcacatgatgctccatgcagcccgccaaccaattcccgatg
ttccggctgtgtattttgtggaacctacgaaggagaatatgaaccgaatt
tctagtgattctgccaaagggttctatgcaagtctatggatcaactttac
cgactcaatctccagagatcttctcgaaagctttgctgatatggtggcaa
ccgtttctaatcctagcccgtttgccggtagaatagcgcgtgtgtacgac
atgtacacatcctttctttctcttgaggatagtttattccatttgaatct
tccgggttcctatgtcaaactgaatgccccgaatgttacagattccgaag
tggaagcagttatcaagtccatcgttgaccggctgttttgcatgatcgtt
acccttggtgttgcgcccgtaatccgtgctcagaggggagggcctgcgtt
gcacgtagcacgcatgctcgaacagcgtatccgtgagcatcttatttcca
gcaataacgttttctcagagaccgtgtccttcgccgctgcaccagcagaa
cggcctttattggttatcgtcgatcgcagcattgatatgtcagtgatgct
gcatcacacatggacataccaagcccttgcgcacgatactctgggcatga
aactgaatcgagtgaccgtcccactcaaagatgaaaatagtgctgcgggt
gaagttcggaaacgggtgttcgatttggataaaagtgatagtttctggga
taaaaacgctggacttccatttcctatggtggccgatgctgttgaaaatg
cgcttcaagcctatcaacaagaagtggcagaattgaatcgatcggctgga
gctatcagcgacgaacccattgatccagctactgcttcgttaaaggaagg
tgcaaacacgaacaaactagctgcagctatctcaagtattcctgaacttt
caaagaagaaacgaactattgatcttcacacgaatattgctactgcgatt
ctggatcaaattaaggaccgaggtctcgatgggttctttcaggtagaaga
agaactgctttcgcgaccgagcactttcgatgtggaacgcattatggcct
tgctgcggaacatgaagggaacaccgacggacaaactaagactgtttctg
gtctactatctatgcgtggacaatgcgagtgaaagcgaactgaagagatg
tgtcgaagcgcttgaggccgctggatgttcggacctacgtgcgtatgcat
atctaaagagtatcagagcatttacgaagaaggtatctgctattcccaag
gctccgttaactgcttcaacgagtataggaagcggttatgctctttctgt
attagataccctatcgcaagtggcaagtaacgtcaataagttgataatat
ctgcagataaagcattcgcagccgcacgaatcgtgcaaaccttgatggac
cggaaaggggatgctagtgttttggaagagtacgagacactggatccaaa
agccccaaagggtaccattccacctgcagcaacaagactctgccagcagg
ccgtattgtttgttgtgggacccggaaattatatcgagtttcaaaactgt
caagatcaagtctgctccaaggttgtccaagacggcaagaacactaagtt
tgtcccaaatgggaagacagttatatatggagcaacggagttgtgctccg
gtgctgagtttgttgaacaactgcaaaggagcggggcggcatcatcaact
ccttaa

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+

>Gcaud1663.t1 ID=Gcaud1663.t1|Name=Gcaud1663.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1956bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:65968..67923+ (Gracilaria caudata M_176_S67 male)
atggattcttcactgcatcttcccggcctctccgtgcgaactcgccagcg
agatgcgcttctgcagatgctttcggcatgcactgccggacctgacgctc
ttgaggacagtaacgatgtttggaaagttctaatatatgatgccactggc
agagacatcattgctccgttgcttcaggtagccgatttaagagctgccgg
tgtaacacttcacatgatgctccatgcagcccgccaaccaattcccgatg
ttccggctgtgtattttgtggaacctacgaaggagaatatgaaccgaatt
tctagtgattctgccaaagggttctatgcaagtctatggatcaactttac
cgactcaatctccagagatcttctcgaaagctttgctgatatggtggcaa
ccgtttctaatcctagcccgtttgccggtagaatagcgcgtgtgtacgac
atgtacacatcctttctttctcttgaggatagtttattccatttgaatct
tccgggttcctatgtcaaactgaatgccccgaatgttacagattccgaag
tggaagcagttatcaagtccatcgttgaccggctgttttgcatgatcgtt
acccttggtgttgcgcccgtaatccgtgctcagaggggagggcctgcgtt
gcacgtagcacgcatgctcgaacagcgtatccgtgagcatcttatttcca
gcaataacgttttctcagagaccgtgtccttcgccgctgcaccagcagaa
cggcctttattggttatcgtcgatcgcagcattgatatgtcagtgatgct
gcatcacacatggacataccaagcccttgcgcacgatactctgggcatga
aactgaatcgagtgaccgtcccactcaaagatgaaaatagtgctgcgggt
gaagttcggaaacgggtgttcgatttggataaaagtgatagtttctggga
taaaaacgctggacttccatttcctatggtggccgatgctgttgaaaatg
cgcttcaagcctatcaacaagaagtggcagaattgaatcgatcggctgga
gctatcagcgacgaacccattgatccagctactgcttcgttaaaggaagg
tgcaaacacgaacaaactagctgcagctatctcaagtattcctgaacttt
caaagaagaaacgaactattgatcttcacacgaatattgctactgcgatt
ctggatcaaattaaggaccgaggtctcgatgggttctttcaggtagaaga
agaactgctttcgcgaccgagcactttcgatgtggaacgcattatggcct
tgctgcggaacatgaagggaacaccgacggacaaactaagactgtttctg
gtctactatctatgcgtggacaatgcgagtgaaagcgaactgaagagatg
tgtcgaagcgcttgaggccgctggatgttcggacctacgtgcgtatgcat
atctaaagagtatcagagcatttacgaagaaggtatctgctattcccaag
gctccgttaactgcttcaacgagtataggaagcggttatgctctttctgt
attagataccctatcgcaagtggcaagtaacgtcaataagttgataatat
ctgcagataaagcattcgcagccgcacgaatcgtgcaaaccttgatggac
cggaaaggggatgctagtgttttggaagagtacgagacactggatccaaa
agccccaaagggtaccattccacctgcagcaacaagactctgccagcagg
ccgtattgtttgttgtgggacccggaaattatatcgagtttcaaaactgt
caagatcaagtctgctccaaggttgtccaagacggcaagaacactaagtt
tgtcccaaatgggaagacagttatatatggagcaacggagttgtgctccg
gtgctgagtttgttgaacaactgcaaaggagcggggcggcatcatcaact
ccttaa