Gcaud1659.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1659.t1
Unique Name	Gcaud1659.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:58473..60098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_2454
PFAMs	Glyco_transf_11
Max annot lvl	1117\|Cyanobacteria
Evalue	3.05e-68
EggNOG OGs	COG0438@1\|root,COG0438@2\|Bacteria,1GRM3@1117\|Cyanobacteria,1HRYZ@1161\|Nostocales
Description	PFAM Glycosyl transferase family 11
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1659	Gcaud1659	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 58473..60098 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1659.t1.start1	Gcaud1659.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 58473..58475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1659.t1.CDS1	Gcaud1659.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 58473..60098 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1659.t1.exon1	Gcaud1659.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 58473..60098 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1659.t1.stop1	Gcaud1659.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 60096..60098 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1659.t1	Gcaud1659.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 58473..60098 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+

mRNA sequence

>Gcaud1659.t1 ID=Gcaud1659.t1|Name=Gcaud1659.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=542bp
MSFTSGKRSLPPLPPPEPKRSRKAVAADCTELASLLLAHARQSTSIDAQL
MPDSFSTEGSQRLPQLLSNVHAYLTPPLSPPLSDKTITSFVDSQETTDAV
VPSIPHQLPRTPRRVNFVHDTQLQAVPQVKPQNKLVNAPAYKAETEIAIS
RIFQLGNVAAVRDPTIPADAPYNGPSLLTMTSFGELGRFGNQVLQYMFLR
TYAQRHNISQIQLPSWVGAALFGLEDAPIQRALPPAIEFRNTLANSTFTT
DLLDYVKNANQKFDVTELNPSCLELGIGAENQRVANVDVWGWFQWHSSHF
APYKRLIQNTFTPVPQVKTQFEKIFSEQLRYRGGKKHTVVGLHLRMGDYK
NIAASSFGYCAPTEWYLNWLEQVWDTLENPILFVASDDLKAVLPAFAAYK
PFTANDIGMNMPKEMKKLKAGFFPDWYGLTQCDVLAISNSTFSFSACLMN
ERKGARFYRAHYRGVMEEIDPWNADAIVHRDVNKAGIAAALETLQVVYNT
QGSRGLARNLLYELPYYGLRSAIMKAVLWKQARDKLAAVSA*

spliced messenger RNA

>Gcaud1659.t1 ID=Gcaud1659.t1|Name=Gcaud1659.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTCACGTCGGGAAAACGTTCTTTACCTCCGTTGCCTCCGCCGGA
GCCCAAACGATCCCGCAAGGCGGTTGCAGCAGATTGCACTGAACTCGCCA
GTCTCTTGCTGGCCCACGCCCGTCAATCCACCTCAATTGACGCTCAGCTT
ATGCCGGACTCCTTTAGCACGGAAGGCTCCCAACGTCTCCCACAGCTGTT
GTCAAACGTTCATGCGTATCTCACACCGCCGTTGTCACCTCCTCTGTCCG
ATAAGACTATCACATCGTTTGTGGATTCACAGGAGACTACTGATGCTGTC
GTTCCTTCAATTCCTCACCAATTGCCTCGCACTCCTCGTCGAGTCAACTT
CGTGCACGACACTCAGTTACAGGCGGTCCCGCAAGTAAAGCCGCAGAACA
AGCTTGTGAATGCTCCGGCTTACAAGGCTGAAACTGAGATTGCGATCTCT
CGTATCTTTCAGCTGGGAAATGTGGCAGCTGTTCGTGATCCCACCATTCC
AGCTGACGCACCGTACAACGGGCCGTCGTTGCTCACTATGACTTCCTTTG
GAGAGCTTGGTCGCTTTGGTAACCAAGTATTGCAGTATATGTTCCTTCGC
ACCTATGCGCAGCGTCACAACATCTCACAGATCCAGTTGCCGTCGTGGGT
CGGTGCTGCCCTGTTTGGACTGGAGGATGCCCCCATACAACGTGCACTAC
CTCCAGCGATAGAATTCCGCAACACGCTGGCTAATTCTACTTTCACCACC
GATCTGCTCGACTACGTGAAGAACGCCAACCAGAAATTCGACGTGACGGA
GTTGAATCCGTCCTGTCTTGAGTTGGGCATTGGCGCAGAGAATCAACGAG
TTGCGAATGTGGACGTGTGGGGCTGGTTCCAGTGGCATAGCTCACACTTC
GCGCCGTACAAGCGCCTGATTCAGAACACTTTCACGCCTGTGCCGCAGGT
CAAGACGCAGTTTGAAAAGATTTTCTCTGAGCAACTTCGCTATCGAGGCG
GAAAGAAACATACTGTGGTTGGGCTGCACTTGCGTATGGGTGACTACAAG
AACATTGCTGCCAGTTCATTTGGATACTGCGCACCGACCGAATGGTATCT
CAATTGGCTAGAGCAGGTTTGGGACACGCTGGAAAACCCAATTTTGTTTG
TGGCATCGGATGATCTGAAGGCAGTACTTCCAGCCTTTGCGGCGTACAAG
CCGTTCACAGCGAACGACATCGGAATGAATATGCCGAAGGAGATGAAGAA
GCTGAAGGCAGGCTTCTTTCCCGACTGGTATGGACTGACACAGTGCGATG
TGTTGGCGATCTCCAACTCGACGTTCAGCTTCTCGGCATGCCTCATGAAT
GAGAGAAAAGGAGCACGGTTCTACAGGGCGCATTATCGCGGGGTCATGGA
AGAAATAGACCCGTGGAACGCGGATGCTATTGTGCACCGTGACGTGAATA
AGGCTGGCATAGCTGCGGCTTTAGAGACTTTGCAGGTTGTGTATAATACA
CAGGGCTCGCGTGGTCTGGCAAGGAACTTGTTGTACGAGCTCCCGTACTA
TGGACTGAGATCGGCCATCATGAAGGCCGTGTTGTGGAAACAGGCGCGAG
ACAAACTGGCGGCTGTTTCAGCGTAG

protein sequence of Gcaud1659.t1

>Gcaud1659.t1 ID=Gcaud1659.t1|Name=Gcaud1659.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MSFTSGKRSLPPLPPPEPKRSRKAVAADCTELASLLLAHARQSTSIDAQL
MPDSFSTEGSQRLPQLLSNVHAYLTPPLSPPLSDKTITSFVDSQETTDAV
VPSIPHQLPRTPRRVNFVHDTQLQAVPQVKPQNKLVNAPAYKAETEIAIS
RIFQLGNVAAVRDPTIPADAPYNGPSLLTMTSFGELGRFGNQVLQYMFLR
TYAQRHNISQIQLPSWVGAALFGLEDAPIQRALPPAIEFRNTLANSTFTT
DLLDYVKNANQKFDVTELNPSCLELGIGAENQRVANVDVWGWFQWHSSHF
APYKRLIQNTFTPVPQVKTQFEKIFSEQLRYRGGKKHTVVGLHLRMGDYK
NIAASSFGYCAPTEWYLNWLEQVWDTLENPILFVASDDLKAVLPAFAAYK
PFTANDIGMNMPKEMKKLKAGFFPDWYGLTQCDVLAISNSTFSFSACLMN
ERKGARFYRAHYRGVMEEIDPWNADAIVHRDVNKAGIAAALETLQVVYNT
QGSRGLARNLLYELPYYGLRSAIMKAVLWKQARDKLAAVSA*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1659.t1 ID=Gcaud1659.t1|Name=Gcaud1659.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+ (Gracilaria caudata M_176_S67 male)
ATGTCTTTCACGTCGGGAAAACGTTCTTTACCTCCGTTGCCTCCGCCGGA
GCCCAAACGATCCCGCAAGGCGGTTGCAGCAGATTGCACTGAACTCGCCA
GTCTCTTGCTGGCCCACGCCCGTCAATCCACCTCAATTGACGCTCAGCTT
ATGCCGGACTCCTTTAGCACGGAAGGCTCCCAACGTCTCCCACAGCTGTT
GTCAAACGTTCATGCGTATCTCACACCGCCGTTGTCACCTCCTCTGTCCG
ATAAGACTATCACATCGTTTGTGGATTCACAGGAGACTACTGATGCTGTC
GTTCCTTCAATTCCTCACCAATTGCCTCGCACTCCTCGTCGAGTCAACTT
CGTGCACGACACTCAGTTACAGGCGGTCCCGCAAGTAAAGCCGCAGAACA
AGCTTGTGAATGCTCCGGCTTACAAGGCTGAAACTGAGATTGCGATCTCT
CGTATCTTTCAGCTGGGAAATGTGGCAGCTGTTCGTGATCCCACCATTCC
AGCTGACGCACCGTACAACGGGCCGTCGTTGCTCACTATGACTTCCTTTG
GAGAGCTTGGTCGCTTTGGTAACCAAGTATTGCAGTATATGTTCCTTCGC
ACCTATGCGCAGCGTCACAACATCTCACAGATCCAGTTGCCGTCGTGGGT
CGGTGCTGCCCTGTTTGGACTGGAGGATGCCCCCATACAACGTGCACTAC
CTCCAGCGATAGAATTCCGCAACACGCTGGCTAATTCTACTTTCACCACC
GATCTGCTCGACTACGTGAAGAACGCCAACCAGAAATTCGACGTGACGGA
GTTGAATCCGTCCTGTCTTGAGTTGGGCATTGGCGCAGAGAATCAACGAG
TTGCGAATGTGGACGTGTGGGGCTGGTTCCAGTGGCATAGCTCACACTTC
GCGCCGTACAAGCGCCTGATTCAGAACACTTTCACGCCTGTGCCGCAGGT
CAAGACGCAGTTTGAAAAGATTTTCTCTGAGCAACTTCGCTATCGAGGCG
GAAAGAAACATACTGTGGTTGGGCTGCACTTGCGTATGGGTGACTACAAG
AACATTGCTGCCAGTTCATTTGGATACTGCGCACCGACCGAATGGTATCT
CAATTGGCTAGAGCAGGTTTGGGACACGCTGGAAAACCCAATTTTGTTTG
TGGCATCGGATGATCTGAAGGCAGTACTTCCAGCCTTTGCGGCGTACAAG
CCGTTCACAGCGAACGACATCGGAATGAATATGCCGAAGGAGATGAAGAA
GCTGAAGGCAGGCTTCTTTCCCGACTGGTATGGACTGACACAGTGCGATG
TGTTGGCGATCTCCAACTCGACGTTCAGCTTCTCGGCATGCCTCATGAAT
GAGAGAAAAGGAGCACGGTTCTACAGGGCGCATTATCGCGGGGTCATGGA
AGAAATAGACCCGTGGAACGCGGATGCTATTGTGCACCGTGACGTGAATA
AGGCTGGCATAGCTGCGGCTTTAGAGACTTTGCAGGTTGTGTATAATACA
CAGGGCTCGCGTGGTCTGGCAAGGAACTTGTTGTACGAGCTCCCGTACTA
TGGACTGAGATCGGCCATCATGAAGGCCGTGTTGTGGAAACAGGCGCGAG
ACAAACTGGCGGCTGTTTCAGCGTAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+

>Gcaud1659.t1 ID=Gcaud1659.t1|Name=Gcaud1659.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1626bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:58473..60098+ (Gracilaria caudata M_176_S67 male)
ATGTCTTTCACGTCGGGAAAACGTTCTTTACCTCCGTTGCCTCCGCCGGA
GCCCAAACGATCCCGCAAGGCGGTTGCAGCAGATTGCACTGAACTCGCCA
GTCTCTTGCTGGCCCACGCCCGTCAATCCACCTCAATTGACGCTCAGCTT
ATGCCGGACTCCTTTAGCACGGAAGGCTCCCAACGTCTCCCACAGCTGTT
GTCAAACGTTCATGCGTATCTCACACCGCCGTTGTCACCTCCTCTGTCCG
ATAAGACTATCACATCGTTTGTGGATTCACAGGAGACTACTGATGCTGTC
GTTCCTTCAATTCCTCACCAATTGCCTCGCACTCCTCGTCGAGTCAACTT
CGTGCACGACACTCAGTTACAGGCGGTCCCGCAAGTAAAGCCGCAGAACA
AGCTTGTGAATGCTCCGGCTTACAAGGCTGAAACTGAGATTGCGATCTCT
CGTATCTTTCAGCTGGGAAATGTGGCAGCTGTTCGTGATCCCACCATTCC
AGCTGACGCACCGTACAACGGGCCGTCGTTGCTCACTATGACTTCCTTTG
GAGAGCTTGGTCGCTTTGGTAACCAAGTATTGCAGTATATGTTCCTTCGC
ACCTATGCGCAGCGTCACAACATCTCACAGATCCAGTTGCCGTCGTGGGT
CGGTGCTGCCCTGTTTGGACTGGAGGATGCCCCCATACAACGTGCACTAC
CTCCAGCGATAGAATTCCGCAACACGCTGGCTAATTCTACTTTCACCACC
GATCTGCTCGACTACGTGAAGAACGCCAACCAGAAATTCGACGTGACGGA
GTTGAATCCGTCCTGTCTTGAGTTGGGCATTGGCGCAGAGAATCAACGAG
TTGCGAATGTGGACGTGTGGGGCTGGTTCCAGTGGCATAGCTCACACTTC
GCGCCGTACAAGCGCCTGATTCAGAACACTTTCACGCCTGTGCCGCAGGT
CAAGACGCAGTTTGAAAAGATTTTCTCTGAGCAACTTCGCTATCGAGGCG
GAAAGAAACATACTGTGGTTGGGCTGCACTTGCGTATGGGTGACTACAAG
AACATTGCTGCCAGTTCATTTGGATACTGCGCACCGACCGAATGGTATCT
CAATTGGCTAGAGCAGGTTTGGGACACGCTGGAAAACCCAATTTTGTTTG
TGGCATCGGATGATCTGAAGGCAGTACTTCCAGCCTTTGCGGCGTACAAG
CCGTTCACAGCGAACGACATCGGAATGAATATGCCGAAGGAGATGAAGAA
GCTGAAGGCAGGCTTCTTTCCCGACTGGTATGGACTGACACAGTGCGATG
TGTTGGCGATCTCCAACTCGACGTTCAGCTTCTCGGCATGCCTCATGAAT
GAGAGAAAAGGAGCACGGTTCTACAGGGCGCATTATCGCGGGGTCATGGA
AGAAATAGACCCGTGGAACGCGGATGCTATTGTGCACCGTGACGTGAATA
AGGCTGGCATAGCTGCGGCTTTAGAGACTTTGCAGGTTGTGTATAATACA
CAGGGCTCGCGTGGTCTGGCAAGGAACTTGTTGTACGAGCTCCCGTACTA
TGGACTGAGATCGGCCATCATGAAGGCCGTGTTGTGGAAACAGGCGCGAG
ACAAACTGGCGGCTGTTTCAGCGTAG