Gcaud1654.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1654.t1
Unique Name	Gcaud1654.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:43327..44673 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1654	Gcaud1654	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 43327..44673 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1654.t1.start1	Gcaud1654.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 43327..43329 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1654.t1.CDS1	Gcaud1654.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 43327..44673 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1654.t1.exon1	Gcaud1654.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 43327..44673 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1654.t1.stop1	Gcaud1654.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 44671..44673 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1654.t1	Gcaud1654.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 43327..44673 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+

mRNA sequence

>Gcaud1654.t1 ID=Gcaud1654.t1|Name=Gcaud1654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=449bp
MTAPSLPSCVSVTSTSFHSPPSNSSVRCPSHTPSPPTLTTLKPLSLPLDK
QRPSPPLPSPTTPLSFTADLPALRAPPQTPPSVGSDLTRSTPSPAPLIRP
HAARVRSDFDKKVAPLSTRSSTLAAARLRSTTRRQRRAVSQMVSDVSSSF
DQRRRSHIGFRAPDLPDVVSEMWNNLSLVPYHNSQLNVIVLFTNAIRAEL
NDMKFLLCLMRDTTCSANSPRSLRNLNTDFELWFSRFSHFVHLIMYCVQT
KLFPLVEQFLNKRDVMTSRCIASTEVAGMSYIQAWKTTCSSLHMSISQLL
QHMCTAENRVLLLTAKRRLRSNGNRVHLLASASESLAVLHRSFSKFLDSL
DMACERVVYLKASTPLCKQLLEEFVSAVVTEGTKDLPPLGWSACITFTRW
IESKKMRNEMVGRLARIAKISVLGRCLADQSHHAVVRLYRMVWAKRAG*

spliced messenger RNA

>Gcaud1654.t1 ID=Gcaud1654.t1|Name=Gcaud1654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGCCCTCACTTCCGTCGTGCGTTAGCGTCACGTCCACCTCGTT
CCACTCGCCGCCGTCCAACTCGTCTGTCCGCTGTCCGTCGCACACCCCGT
CGCCACCCACGCTCACCACGCTCAAGCCCCTGTCGCTCCCGCTCGACAAG
CAGCGTCCCTCGCCGCCGCTTCCTTCCCCCACCACCCCCCTCTCCTTCAC
CGCCGACCTGCCCGCCCTGCGCGCCCCTCCGCAGACGCCCCCGAGCGTCG
GCAGTGATCTCACCCGCTCCACGCCGTCGCCTGCCCCCCTCATCAGGCCG
CATGCCGCTCGCGTTCGATCCGACTTCGATAAGAAAGTTGCGCCACTATC
CACTCGGTCTTCAACGCTGGCGGCCGCAAGACTGAGAAGCACTACGCGCA
GGCAGCGTCGCGCTGTGTCGCAGATGGTCAGCGATGTGTCTTCAAGCTTC
GACCAGAGACGCCGCTCGCATATCGGATTTCGCGCCCCGGACTTGCCGGA
TGTGGTCTCGGAGATGTGGAACAACCTGAGCTTGGTGCCGTACCATAATA
GTCAGCTCAATGTGATCGTGTTGTTCACCAATGCCATCCGTGCCGAGTTG
AATGACATGAAATTCTTGCTGTGCTTGATGAGGGACACCACTTGTTCTGC
AAACTCTCCACGCTCACTTCGAAACCTTAACACCGATTTCGAGCTTTGGT
TTTCAAGATTTTCTCACTTTGTACATCTCATCATGTATTGTGTGCAGACA
AAGCTGTTTCCTCTCGTGGAGCAGTTTCTCAACAAACGAGATGTGATGAC
TAGTAGATGCATAGCATCCACAGAGGTTGCTGGCATGTCGTACATTCAAG
CATGGAAGACAACATGTAGTTCGTTGCACATGTCCATTTCACAGCTGCTT
CAACACATGTGCACCGCCGAGAACCGCGTGTTGTTGCTCACCGCGAAGCG
ACGACTGAGAAGTAATGGCAATAGGGTTCATCTGCTAGCATCGGCAAGTG
AGTCCCTGGCCGTCCTACACCGCTCTTTCTCCAAGTTTCTTGACTCTTTG
GACATGGCTTGCGAACGAGTCGTATATCTCAAGGCGTCAACTCCGCTCTG
CAAGCAGCTTCTTGAAGAGTTTGTGAGTGCGGTTGTGACTGAAGGAACAA
AGGATTTGCCGCCATTGGGATGGAGCGCTTGTATTACTTTTACTAGATGG
ATTGAATCTAAGAAGATGAGGAATGAAATGGTGGGTAGGTTGGCTAGGAT
TGCCAAGATCTCCGTACTAGGTCGATGTCTTGCTGACCAATCGCACCACG
CCGTGGTTCGACTCTACAGAATGGTGTGGGCGAAAAGAGCGGGATGA

protein sequence of Gcaud1654.t1

>Gcaud1654.t1 ID=Gcaud1654.t1|Name=Gcaud1654.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=449bp
MTAPSLPSCVSVTSTSFHSPPSNSSVRCPSHTPSPPTLTTLKPLSLPLDK
QRPSPPLPSPTTPLSFTADLPALRAPPQTPPSVGSDLTRSTPSPAPLIRP
HAARVRSDFDKKVAPLSTRSSTLAAARLRSTTRRQRRAVSQMVSDVSSSF
DQRRRSHIGFRAPDLPDVVSEMWNNLSLVPYHNSQLNVIVLFTNAIRAEL
NDMKFLLCLMRDTTCSANSPRSLRNLNTDFELWFSRFSHFVHLIMYCVQT
KLFPLVEQFLNKRDVMTSRCIASTEVAGMSYIQAWKTTCSSLHMSISQLL
QHMCTAENRVLLLTAKRRLRSNGNRVHLLASASESLAVLHRSFSKFLDSL
DMACERVVYLKASTPLCKQLLEEFVSAVVTEGTKDLPPLGWSACITFTRW
IESKKMRNEMVGRLARIAKISVLGRCLADQSHHAVVRLYRMVWAKRAG*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1654.t1 ID=Gcaud1654.t1|Name=Gcaud1654.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+ (Gracilaria caudata M_176_S67 male)
ATGACCGCGCCCTCACTTCCGTCGTGCGTTAGCGTCACGTCCACCTCGTT
CCACTCGCCGCCGTCCAACTCGTCTGTCCGCTGTCCGTCGCACACCCCGT
CGCCACCCACGCTCACCACGCTCAAGCCCCTGTCGCTCCCGCTCGACAAG
CAGCGTCCCTCGCCGCCGCTTCCTTCCCCCACCACCCCCCTCTCCTTCAC
CGCCGACCTGCCCGCCCTGCGCGCCCCTCCGCAGACGCCCCCGAGCGTCG
GCAGTGATCTCACCCGCTCCACGCCGTCGCCTGCCCCCCTCATCAGGCCG
CATGCCGCTCGCGTTCGATCCGACTTCGATAAGAAAGTTGCGCCACTATC
CACTCGGTCTTCAACGCTGGCGGCCGCAAGACTGAGAAGCACTACGCGCA
GGCAGCGTCGCGCTGTGTCGCAGATGGTCAGCGATGTGTCTTCAAGCTTC
GACCAGAGACGCCGCTCGCATATCGGATTTCGCGCCCCGGACTTGCCGGA
TGTGGTCTCGGAGATGTGGAACAACCTGAGCTTGGTGCCGTACCATAATA
GTCAGCTCAATGTGATCGTGTTGTTCACCAATGCCATCCGTGCCGAGTTG
AATGACATGAAATTCTTGCTGTGCTTGATGAGGGACACCACTTGTTCTGC
AAACTCTCCACGCTCACTTCGAAACCTTAACACCGATTTCGAGCTTTGGT
TTTCAAGATTTTCTCACTTTGTACATCTCATCATGTATTGTGTGCAGACA
AAGCTGTTTCCTCTCGTGGAGCAGTTTCTCAACAAACGAGATGTGATGAC
TAGTAGATGCATAGCATCCACAGAGGTTGCTGGCATGTCGTACATTCAAG
CATGGAAGACAACATGTAGTTCGTTGCACATGTCCATTTCACAGCTGCTT
CAACACATGTGCACCGCCGAGAACCGCGTGTTGTTGCTCACCGCGAAGCG
ACGACTGAGAAGTAATGGCAATAGGGTTCATCTGCTAGCATCGGCAAGTG
AGTCCCTGGCCGTCCTACACCGCTCTTTCTCCAAGTTTCTTGACTCTTTG
GACATGGCTTGCGAACGAGTCGTATATCTCAAGGCGTCAACTCCGCTCTG
CAAGCAGCTTCTTGAAGAGTTTGTGAGTGCGGTTGTGACTGAAGGAACAA
AGGATTTGCCGCCATTGGGATGGAGCGCTTGTATTACTTTTACTAGATGG
ATTGAATCTAAGAAGATGAGGAATGAAATGGTGGGTAGGTTGGCTAGGAT
TGCCAAGATCTCCGTACTAGGTCGATGTCTTGCTGACCAATCGCACCACG
CCGTGGTTCGACTCTACAGAATGGTGTGGGCGAAAAGAGCGGGATGA

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+

>Gcaud1654.t1 ID=Gcaud1654.t1|Name=Gcaud1654.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1347bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:43327..44673+ (Gracilaria caudata M_176_S67 male)
ATGACCGCGCCCTCACTTCCGTCGTGCGTTAGCGTCACGTCCACCTCGTT
CCACTCGCCGCCGTCCAACTCGTCTGTCCGCTGTCCGTCGCACACCCCGT
CGCCACCCACGCTCACCACGCTCAAGCCCCTGTCGCTCCCGCTCGACAAG
CAGCGTCCCTCGCCGCCGCTTCCTTCCCCCACCACCCCCCTCTCCTTCAC
CGCCGACCTGCCCGCCCTGCGCGCCCCTCCGCAGACGCCCCCGAGCGTCG
GCAGTGATCTCACCCGCTCCACGCCGTCGCCTGCCCCCCTCATCAGGCCG
CATGCCGCTCGCGTTCGATCCGACTTCGATAAGAAAGTTGCGCCACTATC
CACTCGGTCTTCAACGCTGGCGGCCGCAAGACTGAGAAGCACTACGCGCA
GGCAGCGTCGCGCTGTGTCGCAGATGGTCAGCGATGTGTCTTCAAGCTTC
GACCAGAGACGCCGCTCGCATATCGGATTTCGCGCCCCGGACTTGCCGGA
TGTGGTCTCGGAGATGTGGAACAACCTGAGCTTGGTGCCGTACCATAATA
GTCAGCTCAATGTGATCGTGTTGTTCACCAATGCCATCCGTGCCGAGTTG
AATGACATGAAATTCTTGCTGTGCTTGATGAGGGACACCACTTGTTCTGC
AAACTCTCCACGCTCACTTCGAAACCTTAACACCGATTTCGAGCTTTGGT
TTTCAAGATTTTCTCACTTTGTACATCTCATCATGTATTGTGTGCAGACA
AAGCTGTTTCCTCTCGTGGAGCAGTTTCTCAACAAACGAGATGTGATGAC
TAGTAGATGCATAGCATCCACAGAGGTTGCTGGCATGTCGTACATTCAAG
CATGGAAGACAACATGTAGTTCGTTGCACATGTCCATTTCACAGCTGCTT
CAACACATGTGCACCGCCGAGAACCGCGTGTTGTTGCTCACCGCGAAGCG
ACGACTGAGAAGTAATGGCAATAGGGTTCATCTGCTAGCATCGGCAAGTG
AGTCCCTGGCCGTCCTACACCGCTCTTTCTCCAAGTTTCTTGACTCTTTG
GACATGGCTTGCGAACGAGTCGTATATCTCAAGGCGTCAACTCCGCTCTG
CAAGCAGCTTCTTGAAGAGTTTGTGAGTGCGGTTGTGACTGAAGGAACAA
AGGATTTGCCGCCATTGGGATGGAGCGCTTGTATTACTTTTACTAGATGG
ATTGAATCTAAGAAGATGAGGAATGAAATGGTGGGTAGGTTGGCTAGGAT
TGCCAAGATCTCCGTACTAGGTCGATGTCTTGCTGACCAATCGCACCACG
CCGTGGTTCGACTCTACAGAATGGTGTGGGCGAAAAGAGCGGGATGA