Gcaud165.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud165.t1
Unique NameGcaud165.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6626_length_1123_cov_3.877907contigNODE_6626_length_1123_cov_3.877907:45..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_004205462.1
PFAMsA_deaminase
Max annot lvl2759|Eukaryota
KEGG rclassRC00477
KEGG koko:K01488
KEGG ReactionR01560,R02556
KEGG Pathwayko00230,ko01100,ko05340,map00230,map01100,map05340
GOsGO:0000034,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006146,GO:0006152,GO:0006154,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009112,GO:0009113,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019239,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042440,GO:0042451,GO:0042454,GO:0042455,GO:0042737,GO:0043094,GO:0043096,GO:0043101,GO:0043103,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046083,GO:0046085,GO:0046100,GO:0046101,GO:0046102,GO:0046103,GO:0046112,GO:0046113,GO:0046128,GO:0046129,GO:0046130,GO:0046148,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
Evalue1.67e-39
EggNOG OGsCOG1816@1|root,KOG1097@2759|Eukaryota
EC3.5.4.4
Descriptionhypoxanthine salvage
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud165Gcaud165Gracilaria caudata M_176_S67 malegeneNODE_6626_length_1123_cov_3.877907 45..1062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1Gcaud165.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6626_length_1123_cov_3.877907 45..1062 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1.start1Gcaud165.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6626_length_1123_cov_3.877907 45..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1.CDS1Gcaud165.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6626_length_1123_cov_3.877907 45..960 +
Gcaud165.t1.CDS2Gcaud165.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_6626_length_1123_cov_3.877907 1052..1062 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1.exon1Gcaud165.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6626_length_1123_cov_3.877907 45..960 +
Gcaud165.t1.exon2Gcaud165.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_6626_length_1123_cov_3.877907 1052..1062 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1.intron1Gcaud165.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_6626_length_1123_cov_3.877907 961..1051 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud165.t1.stop1Gcaud165.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6626_length_1123_cov_3.877907 1060..1062 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud165.t1 ID=Gcaud165.t1|Name=Gcaud165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
LDGSLSESFIAKRAASRGLNLPCDVVHLREHLVASKQRDVAQGAFVQLAN
GNWSQFDFCNQFLQTADELTTATRELVLRLVEQNVWVVEVRFCPLLHMEE
GLSVDDVVAAVVNGFSLARADAEARLPYGLKGGVILCALRSHDVQKVSQV
CKLAEQWLHRGVIALDIAGDERSYPLQPHAKLLQAARQAGVPLTLHAGEC
AFEGASENLRVALQIGAERIGHGLVLDSSVDLCEDMRCAFLETCLTANCS
GGYKVEADRFDLHPIERLLKRGVRVAGFNIDNLLLSGTVKNRADAVEEIV
RARIHSSS*
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spliced messenger RNA

>Gcaud165.t1 ID=Gcaud165.t1|Name=Gcaud165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_6626_length_1123_cov_3.877907:45..1062+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ctggatggctctttGTCCGAGAGCTTTATTGCTAAGCGTGCCGCTTCGAG
AGGTCTGAATCTGCCCTGTGACGTCGTCCATCTACGTGAGCATCTTGTGG
CTTCAAAGCAGCGCGATGTGGCACAAGGCGCGTTTGTACAACTTGCCAAT
GGCAATTGGTCACAGTTTGACTTCTGTAATCAGTTTCTACAAACCGCCGA
CGAACTCACCACGGCCACTCGAGAACTCGTGCTTCGACTCGTCGAGCAGA
ATGTTTGGGTAGTTGAAGTTCGGTTCTGTCCCCTTCTGCATATGGAAGAA
GGCCTTTCAGTAGACGATGTCGTTGCTGCTGTTGTCAACGGTTTCAGTCT
CGCGCGTGCTGATGCGGAAGCCCGTCTGCCGTACGGCTTGAAAGGAGGTG
TGATTCTGTGTGCTTTGCGATCACACGATGTGCAGAAGGTGAGTCAGGTT
TGCAAGCTCGCCGAGCAATGGTTGCATCGAGGTGTTATTGCTCTCGATAT
TGCCGGAGATGAACGATCGTACCCACTTCAACCTCACGCAAAGCTTCTGC
AAGCAGCTCGACAAGCGGGAGTGCCTTTGACTCTCCATGCGGGTGAGTGC
GCCTTTGAAGGTGCGAGCGAAAATTTGAGGGTGGCCTTACAGATAGGAGC
AGAGCGTATAGGTCATGGCCTTGTTCTCGATAGCAGCGTCGACCTATGTG
AAGACATGCGATGTGCTTTCCTCGAAACATGTTTGACCGCCAATTGCAGC
GGTGGATACAAGGTGGAGGCCGATCGTTTTGACTTGCACCCCATAGAACG
TCTCCTAAAGCGGGGTGTAAGAGTGGCTGGTTTCAATATCGACAATTTGT
TACTCAGTGGTACAGTGAAGAACAGAGCTGATGCAGTTGAAGAAATTGTT
CGAGCTCGCATTCATTCGAGTTCTTGA
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protein sequence of Gcaud165.t1

>Gcaud165.t1 ID=Gcaud165.t1|Name=Gcaud165.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
LDGSLSESFIAKRAASRGLNLPCDVVHLREHLVASKQRDVAQGAFVQLAN
GNWSQFDFCNQFLQTADELTTATRELVLRLVEQNVWVVEVRFCPLLHMEE
GLSVDDVVAAVVNGFSLARADAEARLPYGLKGGVILCALRSHDVQKVSQV
CKLAEQWLHRGVIALDIAGDERSYPLQPHAKLLQAARQAGVPLTLHAGEC
AFEGASENLRVALQIGAERIGHGLVLDSSVDLCEDMRCAFLETCLTANCS
GGYKVEADRFDLHPIERLLKRGVRVAGFNIDNLLLSGTVKNRADAVEEIV
RARIHSSS*
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mRNA from alignment at NODE_6626_length_1123_cov_3.877907:45..1062+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud165.t1 ID=Gcaud165.t1|Name=Gcaud165.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1018bp|location=Sequence derived from alignment at NODE_6626_length_1123_cov_3.877907:45..1062+ (Gracilaria caudata M_176_S67 male)
ctggatggctctttGTCCGAGAGCTTTATTGCTAAGCGTGCCGCTTCGAG
AGGTCTGAATCTGCCCTGTGACGTCGTCCATCTACGTGAGCATCTTGTGG
CTTCAAAGCAGCGCGATGTGGCACAAGGCGCGTTTGTACAACTTGCCAAT
GGCAATTGGTCACAGTTTGACTTCTGTAATCAGTTTCTACAAACCGCCGA
CGAACTCACCACGGCCACTCGAGAACTCGTGCTTCGACTCGTCGAGCAGA
ATGTTTGGGTAGTTGAAGTTCGGTTCTGTCCCCTTCTGCATATGGAAGAA
GGCCTTTCAGTAGACGATGTCGTTGCTGCTGTTGTCAACGGTTTCAGTCT
CGCGCGTGCTGATGCGGAAGCCCGTCTGCCGTACGGCTTGAAAGGAGGTG
TGATTCTGTGTGCTTTGCGATCACACGATGTGCAGAAGGTGAGTCAGGTT
TGCAAGCTCGCCGAGCAATGGTTGCATCGAGGTGTTATTGCTCTCGATAT
TGCCGGAGATGAACGATCGTACCCACTTCAACCTCACGCAAAGCTTCTGC
AAGCAGCTCGACAAGCGGGAGTGCCTTTGACTCTCCATGCGGGTGAGTGC
GCCTTTGAAGGTGCGAGCGAAAATTTGAGGGTGGCCTTACAGATAGGAGC
AGAGCGTATAGGTCATGGCCTTGTTCTCGATAGCAGCGTCGACCTATGTG
AAGACATGCGATGTGCTTTCCTCGAAACATGTTTGACCGCCAATTGCAGC
GGTGGATACAAGGTGGAGGCCGATCGTTTTGACTTGCACCCCATAGAACG
TCTCCTAAAGCGGGGTGTAAGAGTGGCTGGTTTCAATATCGACAATTTGT
TACTCAGTGGTACAGTGAAGAACAGAGCTGATGCAGTTGAAGAAATTGTT
CGAGCTCGCATTCATTGTAAGCTTAGCTGGCAACAAATTGCGCAAGTTCT
CATCAATGGGGCACATGCTTCCTTTGATGATTCCATTCGCACATACAAGG
AACAAAGCGAGTTCTTGA
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Coding sequence (CDS) from alignment at NODE_6626_length_1123_cov_3.877907:45..1062+

>Gcaud165.t1 ID=Gcaud165.t1|Name=Gcaud165.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_6626_length_1123_cov_3.877907:45..1062+ (Gracilaria caudata M_176_S67 male)
ctggatggctctttGTCCGAGAGCTTTATTGCTAAGCGTGCCGCTTCGAG
AGGTCTGAATCTGCCCTGTGACGTCGTCCATCTACGTGAGCATCTTGTGG
CTTCAAAGCAGCGCGATGTGGCACAAGGCGCGTTTGTACAACTTGCCAAT
GGCAATTGGTCACAGTTTGACTTCTGTAATCAGTTTCTACAAACCGCCGA
CGAACTCACCACGGCCACTCGAGAACTCGTGCTTCGACTCGTCGAGCAGA
ATGTTTGGGTAGTTGAAGTTCGGTTCTGTCCCCTTCTGCATATGGAAGAA
GGCCTTTCAGTAGACGATGTCGTTGCTGCTGTTGTCAACGGTTTCAGTCT
CGCGCGTGCTGATGCGGAAGCCCGTCTGCCGTACGGCTTGAAAGGAGGTG
TGATTCTGTGTGCTTTGCGATCACACGATGTGCAGAAGGTGAGTCAGGTT
TGCAAGCTCGCCGAGCAATGGTTGCATCGAGGTGTTATTGCTCTCGATAT
TGCCGGAGATGAACGATCGTACCCACTTCAACCTCACGCAAAGCTTCTGC
AAGCAGCTCGACAAGCGGGAGTGCCTTTGACTCTCCATGCGGGTGAGTGC
GCCTTTGAAGGTGCGAGCGAAAATTTGAGGGTGGCCTTACAGATAGGAGC
AGAGCGTATAGGTCATGGCCTTGTTCTCGATAGCAGCGTCGACCTATGTG
AAGACATGCGATGTGCTTTCCTCGAAACATGTTTGACCGCCAATTGCAGC
GGTGGATACAAGGTGGAGGCCGATCGTTTTGACTTGCACCCCATAGAACG
TCTCCTAAAGCGGGGTGTAAGAGTGGCTGGTTTCAATATCGACAATTTGT
TACTCAGTGGTACAGTGAAGAACAGAGCTGATGCAGTTGAAGAAATTGTT
CGAGCTCGCATTCATTCGAGTTCTTGA
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