Gcaud1649.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1649.t1
Unique Name	Gcaud1649.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:26336..27544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708366.1
Preferred name	APR1
PFAMs	PAPS_reduct,Thioredoxin
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00007
KEGG ko	ko:K05907
KEGG Reaction	R05717
KEGG Pathway	ko00920,ko01120,map00920,map01120
GOs	GO:0000103,GO:0003674,GO:0003824,GO:0004604,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009973,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019379,GO:0019419,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0055114
Evalue	3.06e-137
EggNOG OGs	COG0175@1\|root,COG0695@1\|root,KOG0189@2759\|Eukaryota,KOG1752@2759\|Eukaryota
EC	1.8.4.9
Description	protein disulfide oxidoreductase activity
COG category	O
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1649	Gcaud1649	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 26336..27544 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1649.t1.start1	Gcaud1649.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 26336..26338 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1649.t1.CDS1	Gcaud1649.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 26336..27544 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1649.t1.exon1	Gcaud1649.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 26336..27544 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1649.t1.stop1	Gcaud1649.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 27542..27544 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1649.t1	Gcaud1649.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 26336..27544 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+

mRNA sequence

>Gcaud1649.t1 ID=Gcaud1649.t1|Name=Gcaud1649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=403bp
MNAFIVPFSTVSRSSFVPSFQRTSSGHARVIAPVSSRRALVKCAIDFDQL
GEQWTHATGSDRKTPTQIIDHALTNFPGEVAIAFSGAEDVVLIEYASRTK
KPFRVFALDTGRLHPQTYRFYSEVERHYGIKIEYTFPDTQEVVDFVNEKG
LFSFYEDGHQECCRVRKVRPLRRKLSTLSAWITGQRKDQSPGTRAEIPIV
QTDPAFKGKDDSVLIKYNPLANVSSSEVWATIRATEVPYNALHLEGYISI
GCEPCTRPVLPNQHEREGRWWWEEATQKECGLHKGNISTDAAAAELADEF
VSDAVKGDKVVVFTKKGCPYCAALKDLFAELGVPYMEYTISEMDNYGDIV
ASLERSTGQNTAPNLFITSQHIGGNEETQNLHAAGKLLPILEEAGVQLKV
SA*

spliced messenger RNA

>Gcaud1649.t1 ID=Gcaud1649.t1|Name=Gcaud1649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTTTCATCGTGCCGTTTTCCACTGTGTCTCGCTCCTCATTTGT
GCCGTCGTTTCAACGCACTTCTTCCGGTCACGCGCGTGTCATAGCTCCTG
TTTCGTCACGTCGAGCGCTTGTGAAATGCGCCATTGATTTCGATCAATTG
GGTGAACAGTGGACGCATGCAACGGGCTCTGATCGAAAGACTCCCACCCA
AATTATTGATCACGCGCTCACAAACTTTCCGGGCGAAGTTGCCATTGCCT
TTTCAGGCGCCGAGGATGTCGTGTTGATTGAATATGCGTCGCGTACCAAG
AAACCGTTCCGTGTGTTTGCGCTTGATACCGGGCGTCTGCATCCGCAGAC
CTATCGCTTTTATTCCGAGGTTGAACGACATTACGGAATTAAGATTGAAT
ACACTTTCCCTGATACTCAAGAGGTCGTGGATTTCGTCAATGAAAAGGGC
TTGTTCTCGTTTTATGAAGATGGGCATCAGGAATGCTGCAGGGTGCGCAA
AGTGCGTCCTTTGAGAAGAAAGCTTTCTACTCTGTCTGCTTGGATTACTG
GACAGAGAAAAGATCAGAGTCCTGGAACACGCGCTGAAATTCCAATCGTA
CAGACCGACCCCGCCTTCAAGGGAAAGGATGATTCTGTGCTTATCAAGTA
TAATCCCCTGGCTAACGTATCATCCAGTGAAGTTTGGGCTACTATTCGCG
CCACAGAAGTTCCGTATAACGCACTTCACCTGGAAGGATATATCTCCATT
GGATGTGAACCGTGTACAAGACCTGTGCTACCAAACCAACACGAACGTGA
AGGAAGATGGTGGTGGGAGGAAGCTACCCAGAAGGAGTGCGGTTTGCACA
AGGGAAATATTTCTACCGATGCTGCTGCTGCTGAGCTTGCTGATGAATTT
GTGTCGGATGCTGTTAAAGGAGATAAAGTGGTGGTTTTTACGAAGAAGGG
ATGTCCGTACTGCGCGGCGTTGAAGGACCTATTCGCTGAGCTGGGTGTCC
CTTATATGGAATATACTATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAGAGGTCCACGGGTCAGAATACTGCTCCCAATTTGTTTAT
CACATCTCAACATATTGGTGGCAATGAAGAGACCCAAAATTTGCATGCTG
CTGGCAAATTGTTGCCCATTCTTGAGGAGGCCGGCGTTCAGCTTAAGGTC
TCTGCCTGA

protein sequence of Gcaud1649.t1

>Gcaud1649.t1 ID=Gcaud1649.t1|Name=Gcaud1649.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MNAFIVPFSTVSRSSFVPSFQRTSSGHARVIAPVSSRRALVKCAIDFDQL
GEQWTHATGSDRKTPTQIIDHALTNFPGEVAIAFSGAEDVVLIEYASRTK
KPFRVFALDTGRLHPQTYRFYSEVERHYGIKIEYTFPDTQEVVDFVNEKG
LFSFYEDGHQECCRVRKVRPLRRKLSTLSAWITGQRKDQSPGTRAEIPIV
QTDPAFKGKDDSVLIKYNPLANVSSSEVWATIRATEVPYNALHLEGYISI
GCEPCTRPVLPNQHEREGRWWWEEATQKECGLHKGNISTDAAAAELADEF
VSDAVKGDKVVVFTKKGCPYCAALKDLFAELGVPYMEYTISEMDNYGDIV
ASLERSTGQNTAPNLFITSQHIGGNEETQNLHAAGKLLPILEEAGVQLKV
SA*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1649.t1 ID=Gcaud1649.t1|Name=Gcaud1649.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+ (Gracilaria caudata M_176_S67 male)
ATGAACGCTTTCATCGTGCCGTTTTCCACTGTGTCTCGCTCCTCATTTGT
GCCGTCGTTTCAACGCACTTCTTCCGGTCACGCGCGTGTCATAGCTCCTG
TTTCGTCACGTCGAGCGCTTGTGAAATGCGCCATTGATTTCGATCAATTG
GGTGAACAGTGGACGCATGCAACGGGCTCTGATCGAAAGACTCCCACCCA
AATTATTGATCACGCGCTCACAAACTTTCCGGGCGAAGTTGCCATTGCCT
TTTCAGGCGCCGAGGATGTCGTGTTGATTGAATATGCGTCGCGTACCAAG
AAACCGTTCCGTGTGTTTGCGCTTGATACCGGGCGTCTGCATCCGCAGAC
CTATCGCTTTTATTCCGAGGTTGAACGACATTACGGAATTAAGATTGAAT
ACACTTTCCCTGATACTCAAGAGGTCGTGGATTTCGTCAATGAAAAGGGC
TTGTTCTCGTTTTATGAAGATGGGCATCAGGAATGCTGCAGGGTGCGCAA
AGTGCGTCCTTTGAGAAGAAAGCTTTCTACTCTGTCTGCTTGGATTACTG
GACAGAGAAAAGATCAGAGTCCTGGAACACGCGCTGAAATTCCAATCGTA
CAGACCGACCCCGCCTTCAAGGGAAAGGATGATTCTGTGCTTATCAAGTA
TAATCCCCTGGCTAACGTATCATCCAGTGAAGTTTGGGCTACTATTCGCG
CCACAGAAGTTCCGTATAACGCACTTCACCTGGAAGGATATATCTCCATT
GGATGTGAACCGTGTACAAGACCTGTGCTACCAAACCAACACGAACGTGA
AGGAAGATGGTGGTGGGAGGAAGCTACCCAGAAGGAGTGCGGTTTGCACA
AGGGAAATATTTCTACCGATGCTGCTGCTGCTGAGCTTGCTGATGAATTT
GTGTCGGATGCTGTTAAAGGAGATAAAGTGGTGGTTTTTACGAAGAAGGG
ATGTCCGTACTGCGCGGCGTTGAAGGACCTATTCGCTGAGCTGGGTGTCC
CTTATATGGAATATACTATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAGAGGTCCACGGGTCAGAATACTGCTCCCAATTTGTTTAT
CACATCTCAACATATTGGTGGCAATGAAGAGACCCAAAATTTGCATGCTG
CTGGCAAATTGTTGCCCATTCTTGAGGAGGCCGGCGTTCAGCTTAAGGTC
TCTGCCTGA

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+

>Gcaud1649.t1 ID=Gcaud1649.t1|Name=Gcaud1649.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1209bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:26336..27544+ (Gracilaria caudata M_176_S67 male)
ATGAACGCTTTCATCGTGCCGTTTTCCACTGTGTCTCGCTCCTCATTTGT
GCCGTCGTTTCAACGCACTTCTTCCGGTCACGCGCGTGTCATAGCTCCTG
TTTCGTCACGTCGAGCGCTTGTGAAATGCGCCATTGATTTCGATCAATTG
GGTGAACAGTGGACGCATGCAACGGGCTCTGATCGAAAGACTCCCACCCA
AATTATTGATCACGCGCTCACAAACTTTCCGGGCGAAGTTGCCATTGCCT
TTTCAGGCGCCGAGGATGTCGTGTTGATTGAATATGCGTCGCGTACCAAG
AAACCGTTCCGTGTGTTTGCGCTTGATACCGGGCGTCTGCATCCGCAGAC
CTATCGCTTTTATTCCGAGGTTGAACGACATTACGGAATTAAGATTGAAT
ACACTTTCCCTGATACTCAAGAGGTCGTGGATTTCGTCAATGAAAAGGGC
TTGTTCTCGTTTTATGAAGATGGGCATCAGGAATGCTGCAGGGTGCGCAA
AGTGCGTCCTTTGAGAAGAAAGCTTTCTACTCTGTCTGCTTGGATTACTG
GACAGAGAAAAGATCAGAGTCCTGGAACACGCGCTGAAATTCCAATCGTA
CAGACCGACCCCGCCTTCAAGGGAAAGGATGATTCTGTGCTTATCAAGTA
TAATCCCCTGGCTAACGTATCATCCAGTGAAGTTTGGGCTACTATTCGCG
CCACAGAAGTTCCGTATAACGCACTTCACCTGGAAGGATATATCTCCATT
GGATGTGAACCGTGTACAAGACCTGTGCTACCAAACCAACACGAACGTGA
AGGAAGATGGTGGTGGGAGGAAGCTACCCAGAAGGAGTGCGGTTTGCACA
AGGGAAATATTTCTACCGATGCTGCTGCTGCTGAGCTTGCTGATGAATTT
GTGTCGGATGCTGTTAAAGGAGATAAAGTGGTGGTTTTTACGAAGAAGGG
ATGTCCGTACTGCGCGGCGTTGAAGGACCTATTCGCTGAGCTGGGTGTCC
CTTATATGGAATATACTATAAGTGAGATGGATAATTATGGTGATATTGTC
GCATCTCTTGAGAGGTCCACGGGTCAGAATACTGCTCCCAATTTGTTTAT
CACATCTCAACATATTGGTGGCAATGAAGAGACCCAAAATTTGCATGCTG
CTGGCAAATTGTTGCCCATTCTTGAGGAGGCCGGCGTTCAGCTTAAGGTC
TCTGCCTGA