Gcaud1648.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1648.t1
Unique Name	Gcaud1648.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:23662..24756 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1648	Gcaud1648	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 23662..24756 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1648.t1.stop1	Gcaud1648.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 23662..23664 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1648.t1.CDS1	Gcaud1648.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 23662..24756 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1648.t1.exon1	Gcaud1648.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 23662..24756 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1648.t1.start1	Gcaud1648.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 24754..24756 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1648.t1	Gcaud1648.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 23662..24756 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:23662..24756-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:23662..24756-

mRNA sequence

>Gcaud1648.t1 ID=Gcaud1648.t1|Name=Gcaud1648.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=365bp
MRGISFSAATRPDKHRPTFVQPGLAAQPPSTASKMMKKLSTTFRRKTNVS
PTNILAASNALASRPVVSAPQPATPPKPAPRAITFSAGSSVDAPVSPTLA
EPEIPFFDDRQPLRPKSHAPVVAAVRGKPAWMRDSTAQPPIPGHYPRQMS
HQPQLAPEQKPQHGNDPYSRHRHFSFDIGCARPPPCPPAASDEKRKLAAG
RRRRPSRRRWLLPLKQNPDVPKLFDPPAGSNYEKIIRHRDRAEAKILVSA
CTYLESELDRIGSHLKSTQEQTCCSCKTSASENVDANKPCQCASRALLAA
TSERLRAVLTMLEDRYDSIEQVYVKSEEYTRAMGKFFQVSPDEFHRILNE
RDMAKRVDSRKSLR*

spliced messenger RNA

>Gcaud1648.t1 ID=Gcaud1648.t1|Name=Gcaud1648.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:23662..24756- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGCATCTCCTTCTCCGCCGCCACCAGGCCTGACAAGCATCGCCC
CACATTCGTCCAGCCTGGTCTGGCTGCCCAGCCGCCTTCCACCGCCTCCA
AGATGATGAAGAAGCTCAGCACAACCTTTCGTCGCAAGACCAACGTTTCC
CCCACAAACATTCTCGCTGCCTCCAACGCGCTCGCCTCCCGTCCAGTCGT
ATCCGCCCCTCAGCCCGCCACGCCGCCCAAGCCCGCCCCGCGCGCCATAA
CCTTCTCCGCCGGCAGCTCTGTCGACGCGCCCGTATCGCCCACTCTGGCA
GAGCCTGAAATCCCGTTCTTCGACGACCGTCAACCGTTGCGTCCCAAGTC
ACACGCTCCCGTTGTTGCCGCCGTGCGTGGCAAGCCCGCGTGGATGAGGG
ATTCTACTGCACAGCCTCCCATTCCAGGTCATTATCCGCGCCAGATGTCG
CACCAACCGCAGCTTGCTCCCGAGCAAAAGCCACAGCATGGAAACGACCC
TTACTCCAGACACAGACATTTTTCGTTTGACATAGGTTGTGCGCGTCCGC
CTCCATGCCCCCCCGCCGCATCGGACGAGAAGCGCAAGTTGGCTGCCGGA
AGACGTCGTCGCCCGTCAAGGAGGAGGTGGTTATTGCCTCTCAAACAGAA
TCCCGATGTTCCCAAATTATTTGATCCGCCCGCCGGCAGCAATTACGAAA
AGATTATTCGCCATCGTGATCGCGCAGAGGCAAAAATCCTCGTATCTGCT
TGCACATATCTCGAGAGCGAGCTCGACCGTATTGGATCGCATTTAAAATC
CACGCAAGAGCAGACGTGCTGCTCTTGCAAGACTTCCGCCTCAGAGAACG
TTGACGCCAACAAACCCTGTCAGTGCGCTTCTCGAGCGCTATTGGCTGCC
ACTTCGGAGAGACTTCGCGCGGTGCTCACTATGCTGGAAGACCGGTATGA
CAGTATTGAACAGGTGTACGTCAAGAGCGAGGAATACACTCGTGCCATGG
GTAAGTTCTTCCAAGTGAGTCCGGATGAATTTCATCGCATCTTGAACGAG
AGAGACATGGCGAAGAGGGTGGACAGCAGGAAATCACTGAGGTAG

protein sequence of Gcaud1648.t1

>Gcaud1648.t1 ID=Gcaud1648.t1|Name=Gcaud1648.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=365bp
MRGISFSAATRPDKHRPTFVQPGLAAQPPSTASKMMKKLSTTFRRKTNVS
PTNILAASNALASRPVVSAPQPATPPKPAPRAITFSAGSSVDAPVSPTLA
EPEIPFFDDRQPLRPKSHAPVVAAVRGKPAWMRDSTAQPPIPGHYPRQMS
HQPQLAPEQKPQHGNDPYSRHRHFSFDIGCARPPPCPPAASDEKRKLAAG
RRRRPSRRRWLLPLKQNPDVPKLFDPPAGSNYEKIIRHRDRAEAKILVSA
CTYLESELDRIGSHLKSTQEQTCCSCKTSASENVDANKPCQCASRALLAA
TSERLRAVLTMLEDRYDSIEQVYVKSEEYTRAMGKFFQVSPDEFHRILNE
RDMAKRVDSRKSLR*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:23662..24756-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1648.t1 ID=Gcaud1648.t1|Name=Gcaud1648.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:23662..24756- (Gracilaria caudata M_176_S67 male)
ATGCGCGGCATCTCCTTCTCCGCCGCCACCAGGCCTGACAAGCATCGCCC
CACATTCGTCCAGCCTGGTCTGGCTGCCCAGCCGCCTTCCACCGCCTCCA
AGATGATGAAGAAGCTCAGCACAACCTTTCGTCGCAAGACCAACGTTTCC
CCCACAAACATTCTCGCTGCCTCCAACGCGCTCGCCTCCCGTCCAGTCGT
ATCCGCCCCTCAGCCCGCCACGCCGCCCAAGCCCGCCCCGCGCGCCATAA
CCTTCTCCGCCGGCAGCTCTGTCGACGCGCCCGTATCGCCCACTCTGGCA
GAGCCTGAAATCCCGTTCTTCGACGACCGTCAACCGTTGCGTCCCAAGTC
ACACGCTCCCGTTGTTGCCGCCGTGCGTGGCAAGCCCGCGTGGATGAGGG
ATTCTACTGCACAGCCTCCCATTCCAGGTCATTATCCGCGCCAGATGTCG
CACCAACCGCAGCTTGCTCCCGAGCAAAAGCCACAGCATGGAAACGACCC
TTACTCCAGACACAGACATTTTTCGTTTGACATAGGTTGTGCGCGTCCGC
CTCCATGCCCCCCCGCCGCATCGGACGAGAAGCGCAAGTTGGCTGCCGGA
AGACGTCGTCGCCCGTCAAGGAGGAGGTGGTTATTGCCTCTCAAACAGAA
TCCCGATGTTCCCAAATTATTTGATCCGCCCGCCGGCAGCAATTACGAAA
AGATTATTCGCCATCGTGATCGCGCAGAGGCAAAAATCCTCGTATCTGCT
TGCACATATCTCGAGAGCGAGCTCGACCGTATTGGATCGCATTTAAAATC
CACGCAAGAGCAGACGTGCTGCTCTTGCAAGACTTCCGCCTCAGAGAACG
TTGACGCCAACAAACCCTGTCAGTGCGCTTCTCGAGCGCTATTGGCTGCC
ACTTCGGAGAGACTTCGCGCGGTGCTCACTATGCTGGAAGACCGGTATGA
CAGTATTGAACAGGTGTACGTCAAGAGCGAGGAATACACTCGTGCCATGG
GTAAGTTCTTCCAAGTGAGTCCGGATGAATTTCATCGCATCTTGAACGAG
AGAGACATGGCGAAGAGGGTGGACAGCAGGAAATCACTGAGGTAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:23662..24756-

>Gcaud1648.t1 ID=Gcaud1648.t1|Name=Gcaud1648.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1095bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:23662..24756- (Gracilaria caudata M_176_S67 male)
ATGCGCGGCATCTCCTTCTCCGCCGCCACCAGGCCTGACAAGCATCGCCC
CACATTCGTCCAGCCTGGTCTGGCTGCCCAGCCGCCTTCCACCGCCTCCA
AGATGATGAAGAAGCTCAGCACAACCTTTCGTCGCAAGACCAACGTTTCC
CCCACAAACATTCTCGCTGCCTCCAACGCGCTCGCCTCCCGTCCAGTCGT
ATCCGCCCCTCAGCCCGCCACGCCGCCCAAGCCCGCCCCGCGCGCCATAA
CCTTCTCCGCCGGCAGCTCTGTCGACGCGCCCGTATCGCCCACTCTGGCA
GAGCCTGAAATCCCGTTCTTCGACGACCGTCAACCGTTGCGTCCCAAGTC
ACACGCTCCCGTTGTTGCCGCCGTGCGTGGCAAGCCCGCGTGGATGAGGG
ATTCTACTGCACAGCCTCCCATTCCAGGTCATTATCCGCGCCAGATGTCG
CACCAACCGCAGCTTGCTCCCGAGCAAAAGCCACAGCATGGAAACGACCC
TTACTCCAGACACAGACATTTTTCGTTTGACATAGGTTGTGCGCGTCCGC
CTCCATGCCCCCCCGCCGCATCGGACGAGAAGCGCAAGTTGGCTGCCGGA
AGACGTCGTCGCCCGTCAAGGAGGAGGTGGTTATTGCCTCTCAAACAGAA
TCCCGATGTTCCCAAATTATTTGATCCGCCCGCCGGCAGCAATTACGAAA
AGATTATTCGCCATCGTGATCGCGCAGAGGCAAAAATCCTCGTATCTGCT
TGCACATATCTCGAGAGCGAGCTCGACCGTATTGGATCGCATTTAAAATC
CACGCAAGAGCAGACGTGCTGCTCTTGCAAGACTTCCGCCTCAGAGAACG
TTGACGCCAACAAACCCTGTCAGTGCGCTTCTCGAGCGCTATTGGCTGCC
ACTTCGGAGAGACTTCGCGCGGTGCTCACTATGCTGGAAGACCGGTATGA
CAGTATTGAACAGGTGTACGTCAAGAGCGAGGAATACACTCGTGCCATGG
GTAAGTTCTTCCAAGTGAGTCCGGATGAATTTCATCGCATCTTGAACGAG
AGAGACATGGCGAAGAGGGTGGACAGCAGGAAATCACTGAGGTAG