Gcaud1647.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1647.t1
Unique NameGcaud1647.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_34_length_72082_cov_4.421108contigNODE_34_length_72082_cov_4.421108:22547..23171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ14273
PFAMsTRAPP
Max annot lvl35493|Streptophyta
KEGG koko:K20302
Evalue1.32e-70
EggNOG OGsKOG3330@1|root,KOG3330@2759|Eukaryota,37NAF@33090|Viridiplantae,3G7XM@35493|Streptophyta
DescriptionMay play a role in vesicular transport from endoplasmic reticulum to Golgi
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1647Gcaud1647Gracilaria caudata M_176_S67 malegeneNODE_34_length_72082_cov_4.421108 22547..23171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1Gcaud1647.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_34_length_72082_cov_4.421108 22547..23171 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1.start1Gcaud1647.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_34_length_72082_cov_4.421108 22547..22549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1.CDS1Gcaud1647.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 22547..23086 +
Gcaud1647.t1.CDS2Gcaud1647.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_34_length_72082_cov_4.421108 23151..23171 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1.exon1Gcaud1647.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 22547..23086 +
Gcaud1647.t1.exon2Gcaud1647.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_34_length_72082_cov_4.421108 23151..23171 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1.intron1Gcaud1647.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_34_length_72082_cov_4.421108 23087..23150 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1647.t1.stop1Gcaud1647.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_34_length_72082_cov_4.421108 23169..23171 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1647.t1 ID=Gcaud1647.t1|Name=Gcaud1647.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=187bp
MSRPSLQTIGDAAFARCDRVSAELLALTYGTFVRQLLLDYEHVNDVNAQL
DTIGYNIGVRLVEDFLAKSKINYCQSFVDTADVIAKVAFKMFLGITANVT
SWSADRTTFSLVFDDNPLAEFTELPSNCSDLWYSNVLCGVIRGALEMVNM
KVGCSFVRCKLRKDDTNEIRVSLHELLAEQPPQADD*
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spliced messenger RNA

>Gcaud1647.t1 ID=Gcaud1647.t1|Name=Gcaud1647.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:22547..23171+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGACGCCGCCTTCGCGCGCTG
CGACCGCGTCTCCGCCGAGCTGCTCGCCCTCACCTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCACGTCAACGACGTCAACGCGCAGCTC
GATACCATCGGATACAACATCGGCGTGCGCCTCGTCGAGGACTTTCTGGC
AAAGTCCAAGATCAACTACTGCCAGTCGTTCGTCGACACCGCAGATGTCA
TTGCAAAGGTCGCCTTCAAGATGTTTCTGGGCATCACCGCCAACGTCACG
TCGTGGTCCGCCGATCGCACCACCTTCTCGCTCGTGTTTGACGACAACCC
GCTCGCCGAGTTTACCGAGCTGCCGTCGAACTGTTCCGACCTTTGGTACT
CTAACGTTTTGTGCGGTGTCATTCGCGGCGCCTTGGAGATGGTCAACATG
AAGGTGGGTTGCTCGTTTGTGCGATGCAAGCTACGAAAAGATGATACCAA
TGAGATTCGTGTCAGTTTGCACGAGCTTCTCGCGGAACAGCCACCGCAAG
CTGACGATTAA
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protein sequence of Gcaud1647.t1

>Gcaud1647.t1 ID=Gcaud1647.t1|Name=Gcaud1647.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=187bp
MSRPSLQTIGDAAFARCDRVSAELLALTYGTFVRQLLLDYEHVNDVNAQL
DTIGYNIGVRLVEDFLAKSKINYCQSFVDTADVIAKVAFKMFLGITANVT
SWSADRTTFSLVFDDNPLAEFTELPSNCSDLWYSNVLCGVIRGALEMVNM
KVGCSFVRCKLRKDDTNEIRVSLHELLAEQPPQADD*
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mRNA from alignment at NODE_34_length_72082_cov_4.421108:22547..23171+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1647.t1 ID=Gcaud1647.t1|Name=Gcaud1647.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=625bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:22547..23171+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGACGCCGCCTTCGCGCGCTG
CGACCGCGTCTCCGCCGAGCTGCTCGCCCTCACCTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCACGTCAACGACGTCAACGCGCAGCTC
GATACCATCGGATACAACATCGGCGTGCGCCTCGTCGAGGACTTTCTGGC
AAAGTCCAAGATCAACTACTGCCAGTCGTTCGTCGACACCGCAGATGTCA
TTGCAAAGGTCGCCTTCAAGATGTTTCTGGGCATCACCGCCAACGTCACG
TCGTGGTCCGCCGATCGCACCACCTTCTCGCTCGTGTTTGACGACAACCC
GCTCGCCGAGTTTACCGAGCTGCCGTCGAACTGTTCCGACCTTTGGTACT
CTAACGTTTTGTGCGGTGTCATTCGCGGCGCCTTGGAGATGGTCAACATG
AAGGTGGGTTGCTCGTTTGTGCGATGCAAGCTACGAAAAGATGATACCAA
TGAGATTCGTGTCAGTTTGCACGAGCTTCTCGCGGAACAGGTACGTCCAA
GCGCTTTAATTGCATACTCCGCCATTGTCCACTAACCTCTCTTTCTGTGC
ACAGCCACCGCAAGCTGACGATTAA
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Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:22547..23171+

>Gcaud1647.t1 ID=Gcaud1647.t1|Name=Gcaud1647.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=561bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:22547..23171+ (Gracilaria caudata M_176_S67 male)
ATGTCGCGCCCGTCGCTGCAGACCATCGGCGACGCCGCCTTCGCGCGCTG
CGACCGCGTCTCCGCCGAGCTGCTCGCCCTCACCTACGGCACCTTCGTGC
GCCAGCTGCTGCTCGACTACGAGCACGTCAACGACGTCAACGCGCAGCTC
GATACCATCGGATACAACATCGGCGTGCGCCTCGTCGAGGACTTTCTGGC
AAAGTCCAAGATCAACTACTGCCAGTCGTTCGTCGACACCGCAGATGTCA
TTGCAAAGGTCGCCTTCAAGATGTTTCTGGGCATCACCGCCAACGTCACG
TCGTGGTCCGCCGATCGCACCACCTTCTCGCTCGTGTTTGACGACAACCC
GCTCGCCGAGTTTACCGAGCTGCCGTCGAACTGTTCCGACCTTTGGTACT
CTAACGTTTTGTGCGGTGTCATTCGCGGCGCCTTGGAGATGGTCAACATG
AAGGTGGGTTGCTCGTTTGTGCGATGCAAGCTACGAAAAGATGATACCAA
TGAGATTCGTGTCAGTTTGCACGAGCTTCTCGCGGAACAGCCACCGCAAG
CTGACGATTAA
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