Gcaud1646.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1646.t1
Unique Name	Gcaud1646.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:17157..18383 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004349375.1
PFAMs	DAO
Max annot lvl	33154\|Opisthokonta
KEGG rclass	RC00031
KEGG ko	ko:K00109
KEGG Reaction	R03534
KEGG Pathway	ko00650,map00650
Evalue	4.42e-129
EggNOG OGs	COG0579@1\|root,KOG2665@2759\|Eukaryota,397NY@33154\|Opisthokonta
EC	1.1.99.2
Description	2-hydroxyglutarate dehydrogenase activity
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1646	Gcaud1646	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 17157..18383 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1646.t1.stop1	Gcaud1646.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 17157..17159 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1646.t1.CDS1	Gcaud1646.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 17157..18383 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1646.t1.exon1	Gcaud1646.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 17157..18383 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1646.t1.start1	Gcaud1646.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 18381..18383 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1646.t1	Gcaud1646.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 17157..18383 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:17157..18383-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:17157..18383-

mRNA sequence

>Gcaud1646.t1 ID=Gcaud1646.t1|Name=Gcaud1646.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=409bp
MPPSTNVAVIGGGIVGLATARELLLRNVSPVTVLEAESKLGAHQTGRNSG
VIHAGIYYAPHSLKAKLCLEGLHKTYAYLQEKSIPHKKVGKLIVALDESQ
VPALHKLFSNAQQNNVPDIRLVDAAEIRDIEPECTGIAAIHSPITGIVDW
AQVAEGYASDIQSLGGEILKDARVTDINCNDSISLTYASGGILNVLQADR
VISCAGLQSDRVAHLLGGKRSPQILPVRGEYLRVTNPHIASRVKGNIYPV
PDSGAGSPFLGVHFTPTISGELIVGPNAVLAFSRTGYRATDFSFRDVREM
LSYPGFWRLARRFWRYGAAELYRSLFISAAANAARQYVPALKTTDFERRG
PDFYGVRAQALGLGGELVDDFVFESVANGRVLHTRNAPSPAATSSLAIAR
VIVDTSLC*

spliced messenger RNA

>Gcaud1646.t1 ID=Gcaud1646.t1|Name=Gcaud1646.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:17157..18383- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCCTCCACAAACGTAGCGGTGATCGGCGGTGGTATCGTTGGTCT
AGCCACAGCACGGGAGCTTCTTCTCCGCAATGTGAGCCCCGTAACCGTAC
TAGAAGCTGAATCAAAACTTGGCGCCCATCAGACAGGACGCAACTCTGGC
GTAATTCATGCCGGTATTTACTATGCTCCGCATTCCCTTAAGGCCAAACT
GTGTCTGGAAGGGCTGCATAAGACCTACGCGTATCTTCAAGAGAAATCTA
TTCCCCATAAGAAAGTGGGAAAGCTCATAGTTGCCCTAGATGAGTCCCAA
GTCCCTGCGCTTCATAAGCTCTTCTCAAACGCCCAACAAAACAATGTTCC
TGATATCCGTCTCGTGGATGCCGCCGAGATACGGGACATAGAACCTGAGT
GTACTGGCATCGCTGCAATTCACTCCCCCATCACAGGCATAGTGGACTGG
GCTCAAGTAGCTGAGGGCTACGCAAGTGACATCCAATCTCTTGGAGGCGA
AATTCTCAAAGACGCTCGCGTTACGGACATCAATTGTAATGACTCCATAT
CTTTAACGTATGCAAGCGGGGGCATATTAAATGTCCTACAAGCGGATAGG
GTTATTTCTTGTGCAGGGCTGCAGTCTGACCGCGTTGCTCACCTTCTCGG
AGGAAAAAGAAGTCCTCAGATTCTGCCTGTGCGGGGTGAGTACCTTCGCG
TCACCAACCCACACATTGCGAGCAGGGTGAAAGGGAATATATACCCTGTG
CCTGACTCGGGGGCTGGTTCACCTTTTCTAGGTGTGCACTTTACGCCCAC
CATATCAGGTGAACTGATTGTAGGCCCCAATGCCGTACTAGCGTTTTCCC
GGACCGGATATCGAGCGACGGATTTTTCTTTCCGAGACGTTCGCGAAATG
CTTTCCTACCCCGGATTTTGGCGGCTAGCAAGGCGTTTTTGGCGCTATGG
AGCTGCTGAGTTATATCGCAGTTTGTTCATTTCTGCCGCAGCAAATGCAG
CTCGACAATACGTTCCGGCGTTGAAGACGACGGACTTTGAAAGGAGAGGC
CCGGACTTCTACGGCGTTCGAGCACAGGCTTTGGGGTTGGGTGGAGAGCT
TGTTGACGATTTTGTGTTCGAAAGTGTGGCAAATGGAAGAGTACTCCACA
CCAGAAATGCACCGAGCCCAGCGGCTACATCGTCACTTGCGATTGCTCGT
GTAATTGTTGATACAAGCCTCTGTTAG

protein sequence of Gcaud1646.t1

>Gcaud1646.t1 ID=Gcaud1646.t1|Name=Gcaud1646.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=409bp
MPPSTNVAVIGGGIVGLATARELLLRNVSPVTVLEAESKLGAHQTGRNSG
VIHAGIYYAPHSLKAKLCLEGLHKTYAYLQEKSIPHKKVGKLIVALDESQ
VPALHKLFSNAQQNNVPDIRLVDAAEIRDIEPECTGIAAIHSPITGIVDW
AQVAEGYASDIQSLGGEILKDARVTDINCNDSISLTYASGGILNVLQADR
VISCAGLQSDRVAHLLGGKRSPQILPVRGEYLRVTNPHIASRVKGNIYPV
PDSGAGSPFLGVHFTPTISGELIVGPNAVLAFSRTGYRATDFSFRDVREM
LSYPGFWRLARRFWRYGAAELYRSLFISAAANAARQYVPALKTTDFERRG
PDFYGVRAQALGLGGELVDDFVFESVANGRVLHTRNAPSPAATSSLAIAR
VIVDTSLC*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:17157..18383-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1646.t1 ID=Gcaud1646.t1|Name=Gcaud1646.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:17157..18383- (Gracilaria caudata M_176_S67 male)
ATGCCCCCCTCCACAAACGTAGCGGTGATCGGCGGTGGTATCGTTGGTCT
AGCCACAGCACGGGAGCTTCTTCTCCGCAATGTGAGCCCCGTAACCGTAC
TAGAAGCTGAATCAAAACTTGGCGCCCATCAGACAGGACGCAACTCTGGC
GTAATTCATGCCGGTATTTACTATGCTCCGCATTCCCTTAAGGCCAAACT
GTGTCTGGAAGGGCTGCATAAGACCTACGCGTATCTTCAAGAGAAATCTA
TTCCCCATAAGAAAGTGGGAAAGCTCATAGTTGCCCTAGATGAGTCCCAA
GTCCCTGCGCTTCATAAGCTCTTCTCAAACGCCCAACAAAACAATGTTCC
TGATATCCGTCTCGTGGATGCCGCCGAGATACGGGACATAGAACCTGAGT
GTACTGGCATCGCTGCAATTCACTCCCCCATCACAGGCATAGTGGACTGG
GCTCAAGTAGCTGAGGGCTACGCAAGTGACATCCAATCTCTTGGAGGCGA
AATTCTCAAAGACGCTCGCGTTACGGACATCAATTGTAATGACTCCATAT
CTTTAACGTATGCAAGCGGGGGCATATTAAATGTCCTACAAGCGGATAGG
GTTATTTCTTGTGCAGGGCTGCAGTCTGACCGCGTTGCTCACCTTCTCGG
AGGAAAAAGAAGTCCTCAGATTCTGCCTGTGCGGGGTGAGTACCTTCGCG
TCACCAACCCACACATTGCGAGCAGGGTGAAAGGGAATATATACCCTGTG
CCTGACTCGGGGGCTGGTTCACCTTTTCTAGGTGTGCACTTTACGCCCAC
CATATCAGGTGAACTGATTGTAGGCCCCAATGCCGTACTAGCGTTTTCCC
GGACCGGATATCGAGCGACGGATTTTTCTTTCCGAGACGTTCGCGAAATG
CTTTCCTACCCCGGATTTTGGCGGCTAGCAAGGCGTTTTTGGCGCTATGG
AGCTGCTGAGTTATATCGCAGTTTGTTCATTTCTGCCGCAGCAAATGCAG
CTCGACAATACGTTCCGGCGTTGAAGACGACGGACTTTGAAAGGAGAGGC
CCGGACTTCTACGGCGTTCGAGCACAGGCTTTGGGGTTGGGTGGAGAGCT
TGTTGACGATTTTGTGTTCGAAAGTGTGGCAAATGGAAGAGTACTCCACA
CCAGAAATGCACCGAGCCCAGCGGCTACATCGTCACTTGCGATTGCTCGT
GTAATTGTTGATACAAGCCTCTGTTAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:17157..18383-

>Gcaud1646.t1 ID=Gcaud1646.t1|Name=Gcaud1646.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1227bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:17157..18383- (Gracilaria caudata M_176_S67 male)
ATGCCCCCCTCCACAAACGTAGCGGTGATCGGCGGTGGTATCGTTGGTCT
AGCCACAGCACGGGAGCTTCTTCTCCGCAATGTGAGCCCCGTAACCGTAC
TAGAAGCTGAATCAAAACTTGGCGCCCATCAGACAGGACGCAACTCTGGC
GTAATTCATGCCGGTATTTACTATGCTCCGCATTCCCTTAAGGCCAAACT
GTGTCTGGAAGGGCTGCATAAGACCTACGCGTATCTTCAAGAGAAATCTA
TTCCCCATAAGAAAGTGGGAAAGCTCATAGTTGCCCTAGATGAGTCCCAA
GTCCCTGCGCTTCATAAGCTCTTCTCAAACGCCCAACAAAACAATGTTCC
TGATATCCGTCTCGTGGATGCCGCCGAGATACGGGACATAGAACCTGAGT
GTACTGGCATCGCTGCAATTCACTCCCCCATCACAGGCATAGTGGACTGG
GCTCAAGTAGCTGAGGGCTACGCAAGTGACATCCAATCTCTTGGAGGCGA
AATTCTCAAAGACGCTCGCGTTACGGACATCAATTGTAATGACTCCATAT
CTTTAACGTATGCAAGCGGGGGCATATTAAATGTCCTACAAGCGGATAGG
GTTATTTCTTGTGCAGGGCTGCAGTCTGACCGCGTTGCTCACCTTCTCGG
AGGAAAAAGAAGTCCTCAGATTCTGCCTGTGCGGGGTGAGTACCTTCGCG
TCACCAACCCACACATTGCGAGCAGGGTGAAAGGGAATATATACCCTGTG
CCTGACTCGGGGGCTGGTTCACCTTTTCTAGGTGTGCACTTTACGCCCAC
CATATCAGGTGAACTGATTGTAGGCCCCAATGCCGTACTAGCGTTTTCCC
GGACCGGATATCGAGCGACGGATTTTTCTTTCCGAGACGTTCGCGAAATG
CTTTCCTACCCCGGATTTTGGCGGCTAGCAAGGCGTTTTTGGCGCTATGG
AGCTGCTGAGTTATATCGCAGTTTGTTCATTTCTGCCGCAGCAAATGCAG
CTCGACAATACGTTCCGGCGTTGAAGACGACGGACTTTGAAAGGAGAGGC
CCGGACTTCTACGGCGTTCGAGCACAGGCTTTGGGGTTGGGTGGAGAGCT
TGTTGACGATTTTGTGTTCGAAAGTGTGGCAAATGGAAGAGTACTCCACA
CCAGAAATGCACCGAGCCCAGCGGCTACATCGTCACTTGCGATTGCTCGT
GTAATTGTTGATACAAGCCTCTGTTAG