Gcaud1645.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1645.t1
Unique Name	Gcaud1645.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:13066..13803 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	266117.Rxyl_0774
Max annot lvl	201174\|Actinobacteria
Evalue	7.52e-37
EggNOG OGs	2C3PP@1\|root,2Z954@2\|Bacteria,2IB93@201174\|Actinobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1645	Gcaud1645	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 13066..13803 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1	Gcaud1645.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 13066..13803 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1.stop1	Gcaud1645.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_34_length_72082_cov_4.421108 13066..13068 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1.CDS1	Gcaud1645.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 13066..13676 -
Gcaud1645.t1.CDS2	Gcaud1645.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 13755..13803 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1.exon1	Gcaud1645.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 13066..13676 -
Gcaud1645.t1.exon2	Gcaud1645.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 13755..13803 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1.intron1	Gcaud1645.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_34_length_72082_cov_4.421108 13677..13754 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1645.t1.start1	Gcaud1645.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 13801..13803 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:13066..13803-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:13066..13803-

mRNA sequence

>Gcaud1645.t1 ID=Gcaud1645.t1|Name=Gcaud1645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MMRQRGDHKVFTEPFSYPYYFGPERVYHHLGDEHTSHTYSSVLHDVLEES
KKQPVFVKEIAYQIGPLVKNKDAVLSFKGSLLIRHPAWVVPSFHRVWPEH
FRKGMVSFQALHDIFSILKNAGEDVMVIDAHDLRNHPEKVVSAWCANMNI
PIRLDALQWDKGMPDEWKTWAQWFATTSESTGFVPAPKKDYPPMTEKLAR
IVDANRPLYHSLEAHKLQV*

spliced messenger RNA

>Gcaud1645.t1 ID=Gcaud1645.t1|Name=Gcaud1645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:13066..13803- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAGGCAGAGGGGGGATCATAAGGTGTTCACAGAGCCCTTCAGTTA
CCCGTACTATTTTGGACCGGAGCGTGTGTATCATCATCTGGGCGACGAGC
ACACAAGTCACACTTACTCTTCTGTGCTTCACGACGTTTTGGAGGAGAGC
AAGAAACAACCTGTCTTCGTCAAAGAAATCGCATATCAGATTGGCCCATT
GGTCAAAAACAAGGACGCCGTTCTGTCGTTCAAGGGTTCTCTGCTGATTC
GTCACCCGGCCTGGGTGGTGCCTTCGTTCCACCGAGTGTGGCCAGAGCAC
TTTAGAAAAGGTATGGTAAGTTTTCAGGCCTTGCACGACATATTCTCTAT
ATTGAAAAACGCAGGTGAGGACGTAATGGTCATAGACGCTCATGACTTGA
GGAACCATCCTGAGAAGGTTGTCAGCGCCTGGTGCGCAAACATGAATATT
CCAATTCGTTTAGACGCACTTCAGTGGGACAAAGGAATGCCAGACGAATG
GAAAACATGGGCTCAGTGGTTTGCGACGACATCCGAATCGACAGGATTCG
TTCCGGCGCCGAAGAAGGACTACCCTCCTATGACGGAGAAGCTGGCGAGG
ATTGTCGACGCAAATCGCCCGCTCTACCACTCGCTTGAGGCGCACAAACT
GCAGGTGTAG

protein sequence of Gcaud1645.t1

>Gcaud1645.t1 ID=Gcaud1645.t1|Name=Gcaud1645.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MMRQRGDHKVFTEPFSYPYYFGPERVYHHLGDEHTSHTYSSVLHDVLEES
KKQPVFVKEIAYQIGPLVKNKDAVLSFKGSLLIRHPAWVVPSFHRVWPEH
FRKGMVSFQALHDIFSILKNAGEDVMVIDAHDLRNHPEKVVSAWCANMNI
PIRLDALQWDKGMPDEWKTWAQWFATTSESTGFVPAPKKDYPPMTEKLAR
IVDANRPLYHSLEAHKLQV*

mRNA from alignment at NODE_34_length_72082_cov_4.421108:13066..13803-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1645.t1 ID=Gcaud1645.t1|Name=Gcaud1645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:13066..13803- (Gracilaria caudata M_176_S67 male)
ATGATGAGGCAGAGGGGGGATCATAAGGTGTTCACAGAGCCCTTCAGTTG
TAAGTTGCTCCCATACGGCGTTCTACTAGTTCTGAGGCCCATCTAATCCT
TCTGTGCAAGAAACCTTCCTTTTTTAGACCCGTACTATTTTGGACCGGAG
CGTGTGTATCATCATCTGGGCGACGAGCACACAAGTCACACTTACTCTTC
TGTGCTTCACGACGTTTTGGAGGAGAGCAAGAAACAACCTGTCTTCGTCA
AAGAAATCGCATATCAGATTGGCCCATTGGTCAAAAACAAGGACGCCGTT
CTGTCGTTCAAGGGTTCTCTGCTGATTCGTCACCCGGCCTGGGTGGTGCC
TTCGTTCCACCGAGTGTGGCCAGAGCACTTTAGAAAAGGTATGGTAAGTT
TTCAGGCCTTGCACGACATATTCTCTATATTGAAAAACGCAGGTGAGGAC
GTAATGGTCATAGACGCTCATGACTTGAGGAACCATCCTGAGAAGGTTGT
CAGCGCCTGGTGCGCAAACATGAATATTCCAATTCGTTTAGACGCACTTC
AGTGGGACAAAGGAATGCCAGACGAATGGAAAACATGGGCTCAGTGGTTT
GCGACGACATCCGAATCGACAGGATTCGTTCCGGCGCCGAAGAAGGACTA
CCCTCCTATGACGGAGAAGCTGGCGAGGATTGTCGACGCAAATCGCCCGC
TCTACCACTCGCTTGAGGCGCACAAACTGCAGGTGTAG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:13066..13803-

>Gcaud1645.t1 ID=Gcaud1645.t1|Name=Gcaud1645.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:13066..13803- (Gracilaria caudata M_176_S67 male)
ATGATGAGGCAGAGGGGGGATCATAAGGTGTTCACAGAGCCCTTCAGTTA
CCCGTACTATTTTGGACCGGAGCGTGTGTATCATCATCTGGGCGACGAGC
ACACAAGTCACACTTACTCTTCTGTGCTTCACGACGTTTTGGAGGAGAGC
AAGAAACAACCTGTCTTCGTCAAAGAAATCGCATATCAGATTGGCCCATT
GGTCAAAAACAAGGACGCCGTTCTGTCGTTCAAGGGTTCTCTGCTGATTC
GTCACCCGGCCTGGGTGGTGCCTTCGTTCCACCGAGTGTGGCCAGAGCAC
TTTAGAAAAGGTATGGTAAGTTTTCAGGCCTTGCACGACATATTCTCTAT
ATTGAAAAACGCAGGTGAGGACGTAATGGTCATAGACGCTCATGACTTGA
GGAACCATCCTGAGAAGGTTGTCAGCGCCTGGTGCGCAAACATGAATATT
CCAATTCGTTTAGACGCACTTCAGTGGGACAAAGGAATGCCAGACGAATG
GAAAACATGGGCTCAGTGGTTTGCGACGACATCCGAATCGACAGGATTCG
TTCCGGCGCCGAAGAAGGACTACCCTCCTATGACGGAGAAGCTGGCGAGG
ATTGTCGACGCAAATCGCCCGCTCTACCACTCGCTTGAGGCGCACAAACT
GCAGGTGTAG