Gcaud1643.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1643.t1
Unique Name	Gcaud1643.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_34_length_72082_cov_4.421108	contig	NODE_34_length_72082_cov_4.421108:70..1257 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5911.EAR83724
PFAMs	Myosin_TH1,Pkinase
Max annot lvl	5878\|Ciliophora
KEGG ko	ko:K13303
KEGG Pathway	ko04068,ko04151,map04068,map04151
Evalue	0.000932
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota,3ZAXG@5878\|Ciliophora
EC	2.7.11.1
Description	Protein kinase domain containing protein
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1643	Gcaud1643	Gracilaria caudata M_176_S67 male	gene	NODE_34_length_72082_cov_4.421108 70..1257 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1643.t1.CDS1	Gcaud1643.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_34_length_72082_cov_4.421108 70..1257 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1643.t1.exon1	Gcaud1643.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_34_length_72082_cov_4.421108 70..1257 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1643.t1.start1	Gcaud1643.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_34_length_72082_cov_4.421108 1255..1257 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1643.t1	Gcaud1643.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_34_length_72082_cov_4.421108 70..1257 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_34_length_72082_cov_4.421108:70..1257-
coding sequence from alignment at NODE_34_length_72082_cov_4.421108:70..1257-

mRNA sequence

>Gcaud1643.t1 ID=Gcaud1643.t1|Name=Gcaud1643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp
MSRGPRDDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHSSQRNIDDGTPSLHTNTPFVIATTADEHRANQN
AHLSPRYASFGSEGVSATSLRDADSRYAHPALRPTFDALRLLRKIPEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYILLTRDHNSLAAVSDSTCQN
PVDYIFGATHCQISRVISRSGAVRLRLTRTSSRRRNDSATATSSGIVDDD
DLNFRPIESDARLSERSGKSTSSEKRTFGSTMKRIMSGKMKSKPSTPDVS
VSEEISAELIIKIQSTPEADKWEWALRNTTQAYESKRLGDFQLIDALGAG
AFGRVYLVYDAVKGEYLALKVLEKSLVFRDRLHFESAINERLTLEL

spliced messenger RNA

>Gcaud1643.t1 ID=Gcaud1643.t1|Name=Gcaud1643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:70..1257- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGAGGTCCCCGCGACGACTGGCGTCGCGCTTCCGGCTCGCTAAA
CAAGCGTTCGCGCCGCGCCGCCATCTTCGACGCCGCCGCCCGCAGTGCCG
ACTCCTTCTCCTCCGTTGCCGGTCGCTGGTCGCTTTCACGTCGTCGTCGC
TCTCGCGCCGCTTCCGACCATAAGCGTCTCCGCAAGCGCCGGTCCTTCCA
CTCCTCTCAGAGAAACATTGACGATGGCACTCCCTCGCTTCACACCAATA
CCCCTTTTGTCATCGCCACAACCGCCGACGAACACCGCGCTAACCAAAAC
GCCCATCTCTCCCCCAGGTACGCCTCATTCGGCAGTGAAGGAGTATCTGC
CACCAGCTTGCGCGATGCGGACTCGCGCTATGCGCACCCTGCTCTCAGGC
CTACCTTCGACGCCCTTCGTCTACTCAGGAAGATCCCTGAGGTCATGGCC
GGCTGGGTGCAAATCAAGTGCCCCACCGGCCCCGGTCGCCTCAGATGGTC
GACCTGGACTATGTTCTGGGCGGAGCTTCGAGGCGGTTACATCCTGCTCA
CGCGCGACCACAATTCTCTAGCCGCCGTGTCTGATTCTACCTGTCAGAAC
CCCGTTGACTACATATTTGGCGCCACGCATTGTCAAATCTCACGTGTCAT
TTCGCGCTCTGGCGCTGTTCGTCTACGCCTCACACGCACTTCATCCAGAC
GCCGCAACGATTCGGCTACCGCAACTAGCTCGGGCATTGTCGACGATGAT
GACTTGAACTTTCGTCCTATTGAATCAGATGCTCGCTTGTCGGAGCGCTC
TGGCAAAAGTACTAGCTCCGAAAAGCGAACTTTTGGGTCAACCATGAAAA
GGATCATGAGCGGTAAGATGAAGAGCAAGCCTTCAACTCCCGATGTTTCA
GTTTCTGAGGAAATCAGTGCAGAGCTGATCATAAAGATCCAGAGCACTCC
GGAGGCGGACAAATGGGAGTGGGCGCTCAGAAACACCACTCAGGCATATG
AATCAAAGCGCCTCGGCGATTTTCAGCTTATAGATGCGCTTGGCGCCGGT
GCATTTGGCCGTGTCTATCTGGTTTATGATGCAGTCAAGGGCGAATACCT
CGCACTTAAAGTTCTTGAAAAGAGCTTAGTTTTCAGGGACAGGCTGCATT
TTGAAAGTGCCATCAATGAGCGTCTCACCCTGGAGCTG

protein sequence of Gcaud1643.t1

>Gcaud1643.t1 ID=Gcaud1643.t1|Name=Gcaud1643.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=396bp
MSRGPRDDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHSSQRNIDDGTPSLHTNTPFVIATTADEHRANQN
AHLSPRYASFGSEGVSATSLRDADSRYAHPALRPTFDALRLLRKIPEVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYILLTRDHNSLAAVSDSTCQN
PVDYIFGATHCQISRVISRSGAVRLRLTRTSSRRRNDSATATSSGIVDDD
DLNFRPIESDARLSERSGKSTSSEKRTFGSTMKRIMSGKMKSKPSTPDVS
VSEEISAELIIKIQSTPEADKWEWALRNTTQAYESKRLGDFQLIDALGAG
AFGRVYLVYDAVKGEYLALKVLEKSLVFRDRLHFESAINERLTLEL

mRNA from alignment at NODE_34_length_72082_cov_4.421108:70..1257-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1643.t1 ID=Gcaud1643.t1|Name=Gcaud1643.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:70..1257- (Gracilaria caudata M_176_S67 male)
ATGTCTCGAGGTCCCCGCGACGACTGGCGTCGCGCTTCCGGCTCGCTAAA
CAAGCGTTCGCGCCGCGCCGCCATCTTCGACGCCGCCGCCCGCAGTGCCG
ACTCCTTCTCCTCCGTTGCCGGTCGCTGGTCGCTTTCACGTCGTCGTCGC
TCTCGCGCCGCTTCCGACCATAAGCGTCTCCGCAAGCGCCGGTCCTTCCA
CTCCTCTCAGAGAAACATTGACGATGGCACTCCCTCGCTTCACACCAATA
CCCCTTTTGTCATCGCCACAACCGCCGACGAACACCGCGCTAACCAAAAC
GCCCATCTCTCCCCCAGGTACGCCTCATTCGGCAGTGAAGGAGTATCTGC
CACCAGCTTGCGCGATGCGGACTCGCGCTATGCGCACCCTGCTCTCAGGC
CTACCTTCGACGCCCTTCGTCTACTCAGGAAGATCCCTGAGGTCATGGCC
GGCTGGGTGCAAATCAAGTGCCCCACCGGCCCCGGTCGCCTCAGATGGTC
GACCTGGACTATGTTCTGGGCGGAGCTTCGAGGCGGTTACATCCTGCTCA
CGCGCGACCACAATTCTCTAGCCGCCGTGTCTGATTCTACCTGTCAGAAC
CCCGTTGACTACATATTTGGCGCCACGCATTGTCAAATCTCACGTGTCAT
TTCGCGCTCTGGCGCTGTTCGTCTACGCCTCACACGCACTTCATCCAGAC
GCCGCAACGATTCGGCTACCGCAACTAGCTCGGGCATTGTCGACGATGAT
GACTTGAACTTTCGTCCTATTGAATCAGATGCTCGCTTGTCGGAGCGCTC
TGGCAAAAGTACTAGCTCCGAAAAGCGAACTTTTGGGTCAACCATGAAAA
GGATCATGAGCGGTAAGATGAAGAGCAAGCCTTCAACTCCCGATGTTTCA
GTTTCTGAGGAAATCAGTGCAGAGCTGATCATAAAGATCCAGAGCACTCC
GGAGGCGGACAAATGGGAGTGGGCGCTCAGAAACACCACTCAGGCATATG
AATCAAAGCGCCTCGGCGATTTTCAGCTTATAGATGCGCTTGGCGCCGGT
GCATTTGGCCGTGTCTATCTGGTTTATGATGCAGTCAAGGGCGAATACCT
CGCACTTAAAGTTCTTGAAAAGAGCTTAGTTTTCAGGGACAGGCTGCATT
TTGAAAGTGCCATCAATGAGCGTCTCACCCTGGAGCTG

Coding sequence (CDS) from alignment at NODE_34_length_72082_cov_4.421108:70..1257-

>Gcaud1643.t1 ID=Gcaud1643.t1|Name=Gcaud1643.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1188bp|location=Sequence derived from alignment at NODE_34_length_72082_cov_4.421108:70..1257- (Gracilaria caudata M_176_S67 male)
ATGTCTCGAGGTCCCCGCGACGACTGGCGTCGCGCTTCCGGCTCGCTAAA
CAAGCGTTCGCGCCGCGCCGCCATCTTCGACGCCGCCGCCCGCAGTGCCG
ACTCCTTCTCCTCCGTTGCCGGTCGCTGGTCGCTTTCACGTCGTCGTCGC
TCTCGCGCCGCTTCCGACCATAAGCGTCTCCGCAAGCGCCGGTCCTTCCA
CTCCTCTCAGAGAAACATTGACGATGGCACTCCCTCGCTTCACACCAATA
CCCCTTTTGTCATCGCCACAACCGCCGACGAACACCGCGCTAACCAAAAC
GCCCATCTCTCCCCCAGGTACGCCTCATTCGGCAGTGAAGGAGTATCTGC
CACCAGCTTGCGCGATGCGGACTCGCGCTATGCGCACCCTGCTCTCAGGC
CTACCTTCGACGCCCTTCGTCTACTCAGGAAGATCCCTGAGGTCATGGCC
GGCTGGGTGCAAATCAAGTGCCCCACCGGCCCCGGTCGCCTCAGATGGTC
GACCTGGACTATGTTCTGGGCGGAGCTTCGAGGCGGTTACATCCTGCTCA
CGCGCGACCACAATTCTCTAGCCGCCGTGTCTGATTCTACCTGTCAGAAC
CCCGTTGACTACATATTTGGCGCCACGCATTGTCAAATCTCACGTGTCAT
TTCGCGCTCTGGCGCTGTTCGTCTACGCCTCACACGCACTTCATCCAGAC
GCCGCAACGATTCGGCTACCGCAACTAGCTCGGGCATTGTCGACGATGAT
GACTTGAACTTTCGTCCTATTGAATCAGATGCTCGCTTGTCGGAGCGCTC
TGGCAAAAGTACTAGCTCCGAAAAGCGAACTTTTGGGTCAACCATGAAAA
GGATCATGAGCGGTAAGATGAAGAGCAAGCCTTCAACTCCCGATGTTTCA
GTTTCTGAGGAAATCAGTGCAGAGCTGATCATAAAGATCCAGAGCACTCC
GGAGGCGGACAAATGGGAGTGGGCGCTCAGAAACACCACTCAGGCATATG
AATCAAAGCGCCTCGGCGATTTTCAGCTTATAGATGCGCTTGGCGCCGGT
GCATTTGGCCGTGTCTATCTGGTTTATGATGCAGTCAAGGGCGAATACCT
CGCACTTAAAGTTCTTGAAAAGAGCTTAGTTTTCAGGGACAGGCTGCATT
TTGAAAGTGCCATCAATGAGCGTCTCACCCTGGAGCTG