Gcaud1640.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1640.t1
Unique Name	Gcaud1640.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_875_length_16715_cov_4.214690	contig	NODE_875_length_16715_cov_4.214690:8484..9296 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1640	Gcaud1640	Gracilaria caudata M_176_S67 male	gene	NODE_875_length_16715_cov_4.214690 8484..9296 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1640.t1.start1	Gcaud1640.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_875_length_16715_cov_4.214690 8484..8486 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1640.t1.CDS1	Gcaud1640.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_875_length_16715_cov_4.214690 8484..9296 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1640.t1.exon1	Gcaud1640.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_875_length_16715_cov_4.214690 8484..9296 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1640.t1.stop1	Gcaud1640.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_875_length_16715_cov_4.214690 9294..9296 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1640.t1	Gcaud1640.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_875_length_16715_cov_4.214690 8484..9296 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+
coding sequence from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+

mRNA sequence

>Gcaud1640.t1 ID=Gcaud1640.t1|Name=Gcaud1640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=271bp
MRAFPHFRVFIQRLDGQIEPFQIPLLCVADPPTLDDLRTSLEQSALGDVE
RDIFFPNWTKSLHVVQSQLLSKQNVPSWHSIEQHKQTIDTPDKLRSILDN
EESSPGTTAIVVQQCRSKRYSRKKEEPVASLVVNCNANAAVSAHNSLKSP
SPQQNEHKVLIVASNSTSNSNSNSNPNSNSNSNSATNGTRNNSNLTYGVA
LNRVSEAYDSGAMLYVEQPQAYFAPMGMVPPPPPTAVYQPCYSYAPLNVA
AYNYMGAPSFITAYQPFYTY*

spliced messenger RNA

>Gcaud1640.t1 ID=Gcaud1640.t1|Name=Gcaud1640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCTTTCCCCACTTTCGTGTGTTCATTCAGAGGCTGGACGGCCA
AATAGAGCCTTTCCAGATTCCGTTGCTGTGTGTGGCTGATCCGCCCACGC
TCGACGACTTGCGTACCAGCCTCGAGCAGTCGGCACTCGGCGACGTCGAG
AGGGATATCTTCTTTCCAAACTGGACAAAGTCGCTGCACGTGGTGCAGAG
CCAGCTGCTTTCGAAGCAGAACGTGCCGTCGTGGCACTCCATCGAGCAGC
ACAAGCAGACGATTGATACGCCGGACAAGCTGCGCTCCATCCTGGACAAC
GAGGAAAGCTCTCCGGGTACTACTGCCATCGTGGTGCAGCAGTGTCGAAG
CAAGAGGTACAGCCGCAAGAAGGAGGAACCTGTCGCCAGTTTGGTGGTCA
ACTGCAACGCCAACGCTGCTGTGTCGGCGCACAACTCGCTCAAGTCGCCG
TCGCCGCAACAGAACGAGCACAAAGTGCTTATCGTCGCCAGCAACAGCAC
AAGCAACAGcaactccaactccaaccccaactccaactccaactccaacA
GTGCCACCAACGGCACCCGCAACAACAGCAACCTGACTTACGGTGTGGCG
CTTAACCGCGTGTCCGAGGCGTATGACAGCGGCGCGATGTTGTACGTAGA
GCAACCACAGGCGTACTTTGCGCCCATGGGGATGGTGCCTCCTCCGCCGC
CTACTGCCGTTTACCAGCCATGCTACTCGTATGCGCCGCTGAATGTGGCG
GCGTACAACTACATGGGAGCGCCGTCGTTCATTACTGCGTACCAACCGTT
CTACACATACTGA

protein sequence of Gcaud1640.t1

>Gcaud1640.t1 ID=Gcaud1640.t1|Name=Gcaud1640.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=271bp
MRAFPHFRVFIQRLDGQIEPFQIPLLCVADPPTLDDLRTSLEQSALGDVE
RDIFFPNWTKSLHVVQSQLLSKQNVPSWHSIEQHKQTIDTPDKLRSILDN
EESSPGTTAIVVQQCRSKRYSRKKEEPVASLVVNCNANAAVSAHNSLKSP
SPQQNEHKVLIVASNSTSNSNSNSNPNSNSNSNSATNGTRNNSNLTYGVA
LNRVSEAYDSGAMLYVEQPQAYFAPMGMVPPPPPTAVYQPCYSYAPLNVA
AYNYMGAPSFITAYQPFYTY*

mRNA from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1640.t1 ID=Gcaud1640.t1|Name=Gcaud1640.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=813bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCCTTTCCCCACTTTCGTGTGTTCATTCAGAGGCTGGACGGCCA
AATAGAGCCTTTCCAGATTCCGTTGCTGTGTGTGGCTGATCCGCCCACGC
TCGACGACTTGCGTACCAGCCTCGAGCAGTCGGCACTCGGCGACGTCGAG
AGGGATATCTTCTTTCCAAACTGGACAAAGTCGCTGCACGTGGTGCAGAG
CCAGCTGCTTTCGAAGCAGAACGTGCCGTCGTGGCACTCCATCGAGCAGC
ACAAGCAGACGATTGATACGCCGGACAAGCTGCGCTCCATCCTGGACAAC
GAGGAAAGCTCTCCGGGTACTACTGCCATCGTGGTGCAGCAGTGTCGAAG
CAAGAGGTACAGCCGCAAGAAGGAGGAACCTGTCGCCAGTTTGGTGGTCA
ACTGCAACGCCAACGCTGCTGTGTCGGCGCACAACTCGCTCAAGTCGCCG
TCGCCGCAACAGAACGAGCACAAAGTGCTTATCGTCGCCAGCAACAGCAC
AAGCAACAGcaactccaactccaaccccaactccaactccaactccaacA
GTGCCACCAACGGCACCCGCAACAACAGCAACCTGACTTACGGTGTGGCG
CTTAACCGCGTGTCCGAGGCGTATGACAGCGGCGCGATGTTGTACGTAGA
GCAACCACAGGCGTACTTTGCGCCCATGGGGATGGTGCCTCCTCCGCCGC
CTACTGCCGTTTACCAGCCATGCTACTCGTATGCGCCGCTGAATGTGGCG
GCGTACAACTACATGGGAGCGCCGTCGTTCATTACTGCGTACCAACCGTT
CTACACATACTGA

Coding sequence (CDS) from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+

>Gcaud1640.t1 ID=Gcaud1640.t1|Name=Gcaud1640.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=813bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:8484..9296+ (Gracilaria caudata M_176_S67 male)
ATGCGCGCCTTTCCCCACTTTCGTGTGTTCATTCAGAGGCTGGACGGCCA
AATAGAGCCTTTCCAGATTCCGTTGCTGTGTGTGGCTGATCCGCCCACGC
TCGACGACTTGCGTACCAGCCTCGAGCAGTCGGCACTCGGCGACGTCGAG
AGGGATATCTTCTTTCCAAACTGGACAAAGTCGCTGCACGTGGTGCAGAG
CCAGCTGCTTTCGAAGCAGAACGTGCCGTCGTGGCACTCCATCGAGCAGC
ACAAGCAGACGATTGATACGCCGGACAAGCTGCGCTCCATCCTGGACAAC
GAGGAAAGCTCTCCGGGTACTACTGCCATCGTGGTGCAGCAGTGTCGAAG
CAAGAGGTACAGCCGCAAGAAGGAGGAACCTGTCGCCAGTTTGGTGGTCA
ACTGCAACGCCAACGCTGCTGTGTCGGCGCACAACTCGCTCAAGTCGCCG
TCGCCGCAACAGAACGAGCACAAAGTGCTTATCGTCGCCAGCAACAGCAC
AAGCAACAGcaactccaactccaaccccaactccaactccaactccaacA
GTGCCACCAACGGCACCCGCAACAACAGCAACCTGACTTACGGTGTGGCG
CTTAACCGCGTGTCCGAGGCGTATGACAGCGGCGCGATGTTGTACGTAGA
GCAACCACAGGCGTACTTTGCGCCCATGGGGATGGTGCCTCCTCCGCCGC
CTACTGCCGTTTACCAGCCATGCTACTCGTATGCGCCGCTGAATGTGGCG
GCGTACAACTACATGGGAGCGCCGTCGTTCATTACTGCGTACCAACCGTT
CTACACATACTGA