Gcaud1639.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1639.t1
Unique NameGcaud1639.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_875_length_16715_cov_4.214690contigNODE_875_length_16715_cov_4.214690:6970..7785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000000791
Preferred nameCHST14
PFAMsSulfotransfer_2
Max annot lvl33208|Metazoa
KEGG rclassRC00007,RC00231
KEGG koko:K07779,ko:K08105
KEGG ReactionR02180,R10873
KEGG Pathwayko00532,map00532
GOsGO:0000139,GO:0001537,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016740,GO:0016782,GO:0017144,GO:0019538,GO:0019752,GO:0030166,GO:0030203,GO:0030205,GO:0030208,GO:0031090,GO:0031224,GO:0031984,GO:0032787,GO:0034645,GO:0042301,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0050651,GO:0050655,GO:0071704,GO:0072330,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue5.32e-16
EggNOG OGsKOG4651@1|root,KOG4651@2759|Eukaryota,38CH1@33154|Opisthokonta,3BGMN@33208|Metazoa,3CYG1@33213|Bilateria,487HA@7711|Chordata,499AN@7742|Vertebrata
EC2.8.2.35,2.8.2.5
DescriptionN-acetylgalactosamine 4-O-sulfotransferase activity
COG categoryG
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1639Gcaud1639Gracilaria caudata M_176_S67 malegeneNODE_875_length_16715_cov_4.214690 6970..7785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1639.t1.stop1Gcaud1639.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_875_length_16715_cov_4.214690 6970..6972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1639.t1.CDS1Gcaud1639.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_875_length_16715_cov_4.214690 6970..7785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1639.t1.exon1Gcaud1639.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_875_length_16715_cov_4.214690 6970..7785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1639.t1.start1Gcaud1639.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_875_length_16715_cov_4.214690 7783..7785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1639.t1Gcaud1639.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_875_length_16715_cov_4.214690 6970..7785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1639.t1 ID=Gcaud1639.t1|Name=Gcaud1639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=272bp
MYCYIPKNACSRFKPLLRKREGFVDWADSRKIHGKNGLQRLKWLSRNLAV
DRLTDPQIYKFVVVRDPFSRLVSAYQNKVATPWPDQRADFWNKHLRIECP
SLIQSTTMPAEGPLMSLETFLECLLSTDNSEPSNEHWRPQTELCGLDHIQ
YNYYLHLESLASDAQVLLDQLHWHENVTAFRMERSPVYSRNLSEYFSDRA
LQLALEYYKQDFEILPYPRVPTGTIDFYSVFDGTNFQPGFVPPVDFQPPQ
LNNLSHPNGQAIPPPPPPPPL*
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spliced messenger RNA

>Gcaud1639.t1 ID=Gcaud1639.t1|Name=Gcaud1639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:6970..7785- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTGCTACATCCCCAAGAACGCCTGCAGTCGCTTCAAGCCGTTGCT
ACGCAAACGCGAAGGTTTCGTCGACTGGGCCGATTCGCGCAAGATCCACG
GCAAGAACGGTTTACAACGCCTCAAGTGGCTCTCTCGTAACCTCGCTGTC
GACCGTCTCACGGACCCCCAAATCTACAAGTTCGTCGTCGTGCGAGATCC
CTTCTCCAGGCTTGTCTCCGCCTATCAGAATAAGGTTGCCACCCCGTGGC
CAGATCAGAGAGCCGACTTTTGGAACAAGCATTTGCGAATAGAGTGTCCC
TCTCTTATTCAATCCACCACTATGCCGGCCGAGGGGCCGCTAATGTCACT
CGAGACTTTTCTCGAGTGTCTGTTGTCTACTGATAACTCTGAGCCCAGTA
ACGAGCACTGGCGCCCCCAAACCGAACTCTGTGGACTTGACCATATCCAG
TACAACTACTATTTGCATCTCGAGTCGCTCGCATCTGATGCACAAGTCCT
GCTCGACCAGCTCCATTGGCATGAAAACGTCACTGCCTTCCGCATGGAAC
GCAGCCCTGTCTACTCGCGCAATCTGTCTGAGTATTTCTCCGATCGCGCT
CTGCAGCTCGCTCTAGAATATTACAAGCAAGACTTTGAAATACTTCCATA
CCCCCGCGTTCCAACCGGTACCATTGACTTCTACTCCGTGTTTGACGGCA
CTAACTTTCAGCCAGGTTTTGTACCACCCGTCGACTTTCAACCACCTCAG
CTTAATAACCTATCACACCCTAATGGGCAGGCAATTCCTCCTCCCCCTCC
TCCTCCTCCACTATGA
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protein sequence of Gcaud1639.t1

>Gcaud1639.t1 ID=Gcaud1639.t1|Name=Gcaud1639.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=272bp
MYCYIPKNACSRFKPLLRKREGFVDWADSRKIHGKNGLQRLKWLSRNLAV
DRLTDPQIYKFVVVRDPFSRLVSAYQNKVATPWPDQRADFWNKHLRIECP
SLIQSTTMPAEGPLMSLETFLECLLSTDNSEPSNEHWRPQTELCGLDHIQ
YNYYLHLESLASDAQVLLDQLHWHENVTAFRMERSPVYSRNLSEYFSDRA
LQLALEYYKQDFEILPYPRVPTGTIDFYSVFDGTNFQPGFVPPVDFQPPQ
LNNLSHPNGQAIPPPPPPPPL*
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mRNA from alignment at NODE_875_length_16715_cov_4.214690:6970..7785-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1639.t1 ID=Gcaud1639.t1|Name=Gcaud1639.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:6970..7785- (Gracilaria caudata M_176_S67 male)
ATGTACTGCTACATCCCCAAGAACGCCTGCAGTCGCTTCAAGCCGTTGCT
ACGCAAACGCGAAGGTTTCGTCGACTGGGCCGATTCGCGCAAGATCCACG
GCAAGAACGGTTTACAACGCCTCAAGTGGCTCTCTCGTAACCTCGCTGTC
GACCGTCTCACGGACCCCCAAATCTACAAGTTCGTCGTCGTGCGAGATCC
CTTCTCCAGGCTTGTCTCCGCCTATCAGAATAAGGTTGCCACCCCGTGGC
CAGATCAGAGAGCCGACTTTTGGAACAAGCATTTGCGAATAGAGTGTCCC
TCTCTTATTCAATCCACCACTATGCCGGCCGAGGGGCCGCTAATGTCACT
CGAGACTTTTCTCGAGTGTCTGTTGTCTACTGATAACTCTGAGCCCAGTA
ACGAGCACTGGCGCCCCCAAACCGAACTCTGTGGACTTGACCATATCCAG
TACAACTACTATTTGCATCTCGAGTCGCTCGCATCTGATGCACAAGTCCT
GCTCGACCAGCTCCATTGGCATGAAAACGTCACTGCCTTCCGCATGGAAC
GCAGCCCTGTCTACTCGCGCAATCTGTCTGAGTATTTCTCCGATCGCGCT
CTGCAGCTCGCTCTAGAATATTACAAGCAAGACTTTGAAATACTTCCATA
CCCCCGCGTTCCAACCGGTACCATTGACTTCTACTCCGTGTTTGACGGCA
CTAACTTTCAGCCAGGTTTTGTACCACCCGTCGACTTTCAACCACCTCAG
CTTAATAACCTATCACACCCTAATGGGCAGGCAATTCCTCCTCCCCCTCC
TCCTCCTCCACTATGA
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Coding sequence (CDS) from alignment at NODE_875_length_16715_cov_4.214690:6970..7785-

>Gcaud1639.t1 ID=Gcaud1639.t1|Name=Gcaud1639.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=816bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:6970..7785- (Gracilaria caudata M_176_S67 male)
ATGTACTGCTACATCCCCAAGAACGCCTGCAGTCGCTTCAAGCCGTTGCT
ACGCAAACGCGAAGGTTTCGTCGACTGGGCCGATTCGCGCAAGATCCACG
GCAAGAACGGTTTACAACGCCTCAAGTGGCTCTCTCGTAACCTCGCTGTC
GACCGTCTCACGGACCCCCAAATCTACAAGTTCGTCGTCGTGCGAGATCC
CTTCTCCAGGCTTGTCTCCGCCTATCAGAATAAGGTTGCCACCCCGTGGC
CAGATCAGAGAGCCGACTTTTGGAACAAGCATTTGCGAATAGAGTGTCCC
TCTCTTATTCAATCCACCACTATGCCGGCCGAGGGGCCGCTAATGTCACT
CGAGACTTTTCTCGAGTGTCTGTTGTCTACTGATAACTCTGAGCCCAGTA
ACGAGCACTGGCGCCCCCAAACCGAACTCTGTGGACTTGACCATATCCAG
TACAACTACTATTTGCATCTCGAGTCGCTCGCATCTGATGCACAAGTCCT
GCTCGACCAGCTCCATTGGCATGAAAACGTCACTGCCTTCCGCATGGAAC
GCAGCCCTGTCTACTCGCGCAATCTGTCTGAGTATTTCTCCGATCGCGCT
CTGCAGCTCGCTCTAGAATATTACAAGCAAGACTTTGAAATACTTCCATA
CCCCCGCGTTCCAACCGGTACCATTGACTTCTACTCCGTGTTTGACGGCA
CTAACTTTCAGCCAGGTTTTGTACCACCCGTCGACTTTCAACCACCTCAG
CTTAATAACCTATCACACCCTAATGGGCAGGCAATTCCTCCTCCCCCTCC
TCCTCCTCCACTATGA
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