Gcaud1638.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1638.t1
Unique Name	Gcaud1638.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_875_length_16715_cov_4.214690	contig	NODE_875_length_16715_cov_4.214690:5773..6744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1198452.Jab_2c11480
Preferred name	cobB
PFAMs	SIR2
Max annot lvl	28216\|Betaproteobacteria
Evalue	5.05e-64
EggNOG OGs	COG0846@1\|root,COG0846@2\|Bacteria,1MUK1@1224\|Proteobacteria,2VJUU@28216\|Betaproteobacteria,475MD@75682\|Oxalobacteraceae
Description	Sir2 family
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1638	Gcaud1638	Gracilaria caudata M_176_S67 male	gene	NODE_875_length_16715_cov_4.214690 5773..6744 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1638.t1.start1	Gcaud1638.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_875_length_16715_cov_4.214690 5773..5775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1638.t1.CDS1	Gcaud1638.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_875_length_16715_cov_4.214690 5773..6744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1638.t1.exon1	Gcaud1638.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_875_length_16715_cov_4.214690 5773..6744 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1638.t1.stop1	Gcaud1638.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_875_length_16715_cov_4.214690 6742..6744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1638.t1	Gcaud1638.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_875_length_16715_cov_4.214690 5773..6744 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+
coding sequence from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+

mRNA sequence

>Gcaud1638.t1 ID=Gcaud1638.t1|Name=Gcaud1638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MARLKPQLPQGAAFAKDAAIEHLYDRLSHFRRITVLTGAGISTESGLSDY
RSPGKKKPPRPPIQHQEYIASASVRKRYWARSFVGFPVLSNARPNLAHLS
LAALHDAAGSRFRWHITQNVDGLLQAARIPSASLLELHGTIHKVVCRSCG
AYELRKHFQTRLLNCNREWSKELGTYKHRPDGDADLDDNLVHKFHVPRCD
ACGEEALMPALVFHGGQVPAQVSALAAHKVEQSDALLVVGSTVTPFSAYR
LVRLAKKNGAFLACVNFGDTRADELYDLKVEALVGNAMARFANMQLAGGF
KAPEGFEDVLRPHEDELVRRLEL*

spliced messenger RNA

>Gcaud1638.t1 ID=Gcaud1638.t1|Name=Gcaud1638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCCTCAAACCGCAGCTTCCACAAGGTGCAGCCTTCGCGAAAGA
TGCCGCAATCGAGCATCTCTATGACCGTCTGTCCCATTTCCGTCGCATCA
CCGTGCTCACCGGCGCAGGAATTTCCACAGAGTCCGGTTTGAGCGATTAT
CGTTCGCCTGGAAAGAAAAAGCCGCCGCGCCCACCCATCCAGCATCAAGA
ATACATCGCAAGCGCCTCCGTGCGCAAACGCTATTGGGCTCGTTCGTTTG
TTGGCTTTCCAGTGCTGTCCAACGCGCGTCCAAACTTGGCACACCTGTCG
CTTGCCGCATTGCACGACGCAGCTGGCTCGCGATTTCGCTGGCACATAAC
GCAGAACGTCGATGGTCTACTGCAGGCCGCCAGAATCCCAAGCGCGTCGC
TTCTCGAATTGCACGGTACCATTCACAAAGTGGTGTGTCGCTCGTGCGGC
GCGTATGAGCTTCGGAAGCATTTTCAAACTCGCCTTTTGAACTGCAACAG
GGAATGGAGCAAAGAACTAGGCACGTACAAGCATCGACCGGACGGTGATG
CAGATCTGGATGACAATCTGGTGCACAAGTTCCACGTTCCGCGCTGCGAT
GCATGCGGCGAAGAGGCGTTAATGCCGGCGCTTGTGTTTCACGGCGGTCA
AGTTCCAGCCCAAGTGTCCGCCTTGGCCGCGCATAAGGTTGAACAAAGCG
ATGCGTTGCTCGTCGTAGGTTCAACCGTCACCCCGTTCTCAGCCTATCGT
CTCGTGAGACTGGCGAAGAAGAACGGCGCTTTCTTGGCGTGCGTGAATTT
TGGTGACACAAGGGCAGATGAGCTGTACGACTTGAAAGTTGAAGCGCTTG
TTGGCAACGCCATGGCGCGGTTTGCAAACATGCAGCTCGCGGGGGGTTTC
AAAGCACCTGAAGGGTTCGAAGATGTGTTGCGGCCGCACGAAGACGAACT
GGTGCGCAGACTGGAATTGTGA

protein sequence of Gcaud1638.t1

>Gcaud1638.t1 ID=Gcaud1638.t1|Name=Gcaud1638.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MARLKPQLPQGAAFAKDAAIEHLYDRLSHFRRITVLTGAGISTESGLSDY
RSPGKKKPPRPPIQHQEYIASASVRKRYWARSFVGFPVLSNARPNLAHLS
LAALHDAAGSRFRWHITQNVDGLLQAARIPSASLLELHGTIHKVVCRSCG
AYELRKHFQTRLLNCNREWSKELGTYKHRPDGDADLDDNLVHKFHVPRCD
ACGEEALMPALVFHGGQVPAQVSALAAHKVEQSDALLVVGSTVTPFSAYR
LVRLAKKNGAFLACVNFGDTRADELYDLKVEALVGNAMARFANMQLAGGF
KAPEGFEDVLRPHEDELVRRLEL*

mRNA from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1638.t1 ID=Gcaud1638.t1|Name=Gcaud1638.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+ (Gracilaria caudata M_176_S67 male)
ATGGCACGCCTCAAACCGCAGCTTCCACAAGGTGCAGCCTTCGCGAAAGA
TGCCGCAATCGAGCATCTCTATGACCGTCTGTCCCATTTCCGTCGCATCA
CCGTGCTCACCGGCGCAGGAATTTCCACAGAGTCCGGTTTGAGCGATTAT
CGTTCGCCTGGAAAGAAAAAGCCGCCGCGCCCACCCATCCAGCATCAAGA
ATACATCGCAAGCGCCTCCGTGCGCAAACGCTATTGGGCTCGTTCGTTTG
TTGGCTTTCCAGTGCTGTCCAACGCGCGTCCAAACTTGGCACACCTGTCG
CTTGCCGCATTGCACGACGCAGCTGGCTCGCGATTTCGCTGGCACATAAC
GCAGAACGTCGATGGTCTACTGCAGGCCGCCAGAATCCCAAGCGCGTCGC
TTCTCGAATTGCACGGTACCATTCACAAAGTGGTGTGTCGCTCGTGCGGC
GCGTATGAGCTTCGGAAGCATTTTCAAACTCGCCTTTTGAACTGCAACAG
GGAATGGAGCAAAGAACTAGGCACGTACAAGCATCGACCGGACGGTGATG
CAGATCTGGATGACAATCTGGTGCACAAGTTCCACGTTCCGCGCTGCGAT
GCATGCGGCGAAGAGGCGTTAATGCCGGCGCTTGTGTTTCACGGCGGTCA
AGTTCCAGCCCAAGTGTCCGCCTTGGCCGCGCATAAGGTTGAACAAAGCG
ATGCGTTGCTCGTCGTAGGTTCAACCGTCACCCCGTTCTCAGCCTATCGT
CTCGTGAGACTGGCGAAGAAGAACGGCGCTTTCTTGGCGTGCGTGAATTT
TGGTGACACAAGGGCAGATGAGCTGTACGACTTGAAAGTTGAAGCGCTTG
TTGGCAACGCCATGGCGCGGTTTGCAAACATGCAGCTCGCGGGGGGTTTC
AAAGCACCTGAAGGGTTCGAAGATGTGTTGCGGCCGCACGAAGACGAACT
GGTGCGCAGACTGGAATTGTGA

Coding sequence (CDS) from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+

>Gcaud1638.t1 ID=Gcaud1638.t1|Name=Gcaud1638.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:5773..6744+ (Gracilaria caudata M_176_S67 male)
ATGGCACGCCTCAAACCGCAGCTTCCACAAGGTGCAGCCTTCGCGAAAGA
TGCCGCAATCGAGCATCTCTATGACCGTCTGTCCCATTTCCGTCGCATCA
CCGTGCTCACCGGCGCAGGAATTTCCACAGAGTCCGGTTTGAGCGATTAT
CGTTCGCCTGGAAAGAAAAAGCCGCCGCGCCCACCCATCCAGCATCAAGA
ATACATCGCAAGCGCCTCCGTGCGCAAACGCTATTGGGCTCGTTCGTTTG
TTGGCTTTCCAGTGCTGTCCAACGCGCGTCCAAACTTGGCACACCTGTCG
CTTGCCGCATTGCACGACGCAGCTGGCTCGCGATTTCGCTGGCACATAAC
GCAGAACGTCGATGGTCTACTGCAGGCCGCCAGAATCCCAAGCGCGTCGC
TTCTCGAATTGCACGGTACCATTCACAAAGTGGTGTGTCGCTCGTGCGGC
GCGTATGAGCTTCGGAAGCATTTTCAAACTCGCCTTTTGAACTGCAACAG
GGAATGGAGCAAAGAACTAGGCACGTACAAGCATCGACCGGACGGTGATG
CAGATCTGGATGACAATCTGGTGCACAAGTTCCACGTTCCGCGCTGCGAT
GCATGCGGCGAAGAGGCGTTAATGCCGGCGCTTGTGTTTCACGGCGGTCA
AGTTCCAGCCCAAGTGTCCGCCTTGGCCGCGCATAAGGTTGAACAAAGCG
ATGCGTTGCTCGTCGTAGGTTCAACCGTCACCCCGTTCTCAGCCTATCGT
CTCGTGAGACTGGCGAAGAAGAACGGCGCTTTCTTGGCGTGCGTGAATTT
TGGTGACACAAGGGCAGATGAGCTGTACGACTTGAAAGTTGAAGCGCTTG
TTGGCAACGCCATGGCGCGGTTTGCAAACATGCAGCTCGCGGGGGGTTTC
AAAGCACCTGAAGGGTTCGAAGATGTGTTGCGGCCGCACGAAGACGAACT
GGTGCGCAGACTGGAATTGTGA