Gcaud1637.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1637.t1
Unique Name	Gcaud1637.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_875_length_16715_cov_4.214690	contig	NODE_875_length_16715_cov_4.214690:2135..4048 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704226.1
PFAMs	Inositol_P
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017,RC00078
KEGG ko	ko:K18649
KEGG Reaction	R01185,R01186,R01187,R03013,R07674
KEGG Pathway	ko00053,ko00340,ko00562,ko01100,ko01110,ko01230,ko04070,map00053,map00340,map00562,map01100,map01110,map01230,map04070
KEGG Module	M00026,M00114,M00131
GOs	GO:0000105,GO:0003674,GO:0003824,GO:0004401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0052745,GO:0052803,GO:0052834,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	2.99e-115
EggNOG OGs	COG0483@1\|root,KOG2951@2759\|Eukaryota
EC	3.1.3.15,3.1.3.25,3.1.3.93
Description	Inositol-1-monophosphatase
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1637	Gcaud1637	Gracilaria caudata M_176_S67 male	gene	NODE_875_length_16715_cov_4.214690 2135..4048 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1637.t1.start1	Gcaud1637.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_875_length_16715_cov_4.214690 2135..2137 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1637.t1.CDS1	Gcaud1637.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_875_length_16715_cov_4.214690 2135..4048 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1637.t1.exon1	Gcaud1637.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_875_length_16715_cov_4.214690 2135..4048 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1637.t1.stop1	Gcaud1637.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_875_length_16715_cov_4.214690 4046..4048 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1637.t1	Gcaud1637.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_875_length_16715_cov_4.214690 2135..4048 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+
coding sequence from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+

mRNA sequence

>Gcaud1637.t1 ID=Gcaud1637.t1|Name=Gcaud1637.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=638bp
MGFGKTVFNPSQSSFSFRNRSANTLHNEKEPRVDSPFPYRKGVCAIADHV
SQKVTPASSKVPSEILDTAVRAADIAGAIIRKYFRNPIEISFKHDESPVT
KADKEVESVIRSFINETFPEHGIIGEEHGSDFSQLRSEYQWIIDPIDGTK
AFMTGRPTFATLIAVARRGVPLLGIVDQPISQERWIGIADEQTTLNGVPV
RVREPPVLSKCVMQATTPDMFVGWDGVLFRKLSAHVKGVVYGSDCYAYAM
LASGFADLVVEADLKVWDFMALVPVVTGAGGFMGDWNGLSLSVESEGRVI
AAAGQELFGEVSQILNPIDEMGLYPGRTKDTYVPDPMPEDPGEGNIESMT
GFGYGSATGSGYIVNVQARSVNSRYCDVQIKCPRYLAPKDNELISMVKNE
LRRGKVIVTIDVDNADSPDSIIPVNVDRKAAAEVRQLLDKLAEAAGVTKE
PSLSDIISFSEVFTRSTQVAAVEHVLPVARQAVMNAVRDLRVSRRREGVF
LQYDILQRTRKIRKTAEEIRHRLPRRVEAKREYLRDLTKGVMEDVDPNRL
EVEIMTFADRVDVTEELTRLVAHVHIFELSFLAADEPVGQRMVFLLQEMH
REITTLSDKCQDSAVNHLSVTIKGEIEKMREQCVNIR*

spliced messenger RNA

>Gcaud1637.t1 ID=Gcaud1637.t1|Name=Gcaud1637.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTCGGAAAAACTGTATTCAACCCCTCGCAGTCGTCTTTCTCATT
CCGTAATCGTTCCGCAAACACGCTGCACAACGAAAAAGAGCCCCGCGTTG
ACTCCCCATTTCCCTATCGAAAAGGCGTTTGTGCAATCGCAGATCACGTG
TCGCAGAAGGTCACACCCGCGTCTTCCAAGGTGCCATCTGAGATCCTTGA
CACTGCCGTTAGGGCTGCGGATATTGCGGGAGCCATCATTCGAAAGTACT
TTAGAAATCCCATCGAAATTTCCTTCAAACATGATGAATCCCCTGTCACC
AAAGCCGACAAGGAAGTCGAGTCCGTCATACGTTCCTTCATTAACGAAAC
CTTCCCAGAGCATGGAATTATTGGTGAAGAACATGGAAGCGACTTTTCGC
AGCTTCGTAGTGAATACCAGTGGATTATCGATCCTATCGATGGTACCAAG
GCTTTCATGACAGGAAGACCAACGTTTGCAACTCTGATTGCCGTTGCCCG
CCGCGGTGTTCCTCTCTTGGGAATCGTTGACCAGCCCATATCTCAGGAAC
GCTGGATTGGCATTGCCGATGAGCAAACCACATTGAATGGCGTTCCAGTA
AGAGTGAGAGAGCCTCCTGTACTTTCCAAATGCGTCATGCAAGCCACCAC
GCCTGATATGTTTGTCGGGTGGGACGGCGTATTATTCCGAAAGCTTTCCG
CCCATGTGAAAGGCGTTGTATACGGCTCAGATTGCTATGCTTATGCGATG
CTTGCGTCAGGCTTTGCAGATCTTGTGGTCGAGGCTGACCTAAAAGTTTG
GGACTTTATGGCGTTGGTGCCGGTTGTCACCGGCGCTGGGGGTTTTATGG
GCGATTGGAATGGATTATCGTTATCTGTGGAAAGCGAGGGTCGTGTCATT
GCGGCCGCGGGGCAAGAGCTCTTTGGCGAAGTATCTCAAATCCTGAACCC
AATTGATGAAATGGGCTTATATCCTGGTAGAACAAAAGACACTTATGTTC
CAGATCCCATGCCCGAGGATCCCGGGGAAGGAAACATAGAAAGTATGACA
GGGTTTGGTTACGGTTCAGCTACAGGTTCTGGTTATATTGTGAATGTACA
GGCGCGCAGCGTGAACTCTCGATATTGTGATGTGCAGATCAAATGTCCGC
GGTATCTGGCGCCAAAAGACAACGAGCTTATCAGTATGGTGAAGAACGAA
TTGCGACGAGGAAAGGTGATTGTAACGATAGACGTCGATAATGCTGATTC
ACCCGATAGCATCATTCCAGTCAACGTGGACCGTAAAGCAGCTGCAGAGG
TTCGTCAACTACTCGATAAACTGGCAGAGGCGGCAGGGGTAACGAAAGAG
CCATCCTTGTCCGATATAATCAGTTTCTCAGAAGTATTTACTCGATCCAC
CCAGGTTGCAGCCGTGGAACATGTGCTGCCCGTCGCGAGACAGGCGGTGA
TGAATGCAGTTCGAGATCTAAGAGTGTCGCGAAGAAGAGAAGGAGTATTC
TTGCAGTACGACATCTTGCAAAGAACAAGAAAGATTAGAAAGACAGCAGA
AGAAATTCGTCATCGTCTACCGCGACGCGTGGAGGCCAAGAGAGAGTACT
TGAGAGATCTCACGAAAGGGGTGATGGAAGATGTGGACCCTAACAGGTTG
GAGGTGGAAATTATGACTTTTGCTGACAGGGTCGATGTAACTGAGGAGTT
GACTCGATTAGTAGCTCATGTTCACATTTTTGAGCTGTCATTTCTGGCAG
CAGATGAACCTGTTGGACAGAGAATGGTATTTCTGTTGCAAGAAATGCAT
CGTGAAATCACTACGCTGAGTGACAAGTGCCAAGATTCCGCAGTGAACCA
CTTGAGCGTGACGATCAAAGGGGAAATCGAGAAGATGCGCGAGCAATGCG
TCAACATTCGGTAG

protein sequence of Gcaud1637.t1

>Gcaud1637.t1 ID=Gcaud1637.t1|Name=Gcaud1637.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=638bp
MGFGKTVFNPSQSSFSFRNRSANTLHNEKEPRVDSPFPYRKGVCAIADHV
SQKVTPASSKVPSEILDTAVRAADIAGAIIRKYFRNPIEISFKHDESPVT
KADKEVESVIRSFINETFPEHGIIGEEHGSDFSQLRSEYQWIIDPIDGTK
AFMTGRPTFATLIAVARRGVPLLGIVDQPISQERWIGIADEQTTLNGVPV
RVREPPVLSKCVMQATTPDMFVGWDGVLFRKLSAHVKGVVYGSDCYAYAM
LASGFADLVVEADLKVWDFMALVPVVTGAGGFMGDWNGLSLSVESEGRVI
AAAGQELFGEVSQILNPIDEMGLYPGRTKDTYVPDPMPEDPGEGNIESMT
GFGYGSATGSGYIVNVQARSVNSRYCDVQIKCPRYLAPKDNELISMVKNE
LRRGKVIVTIDVDNADSPDSIIPVNVDRKAAAEVRQLLDKLAEAAGVTKE
PSLSDIISFSEVFTRSTQVAAVEHVLPVARQAVMNAVRDLRVSRRREGVF
LQYDILQRTRKIRKTAEEIRHRLPRRVEAKREYLRDLTKGVMEDVDPNRL
EVEIMTFADRVDVTEELTRLVAHVHIFELSFLAADEPVGQRMVFLLQEMH
REITTLSDKCQDSAVNHLSVTIKGEIEKMREQCVNIR*

mRNA from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1637.t1 ID=Gcaud1637.t1|Name=Gcaud1637.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+ (Gracilaria caudata M_176_S67 male)
ATGGGCTTCGGAAAAACTGTATTCAACCCCTCGCAGTCGTCTTTCTCATT
CCGTAATCGTTCCGCAAACACGCTGCACAACGAAAAAGAGCCCCGCGTTG
ACTCCCCATTTCCCTATCGAAAAGGCGTTTGTGCAATCGCAGATCACGTG
TCGCAGAAGGTCACACCCGCGTCTTCCAAGGTGCCATCTGAGATCCTTGA
CACTGCCGTTAGGGCTGCGGATATTGCGGGAGCCATCATTCGAAAGTACT
TTAGAAATCCCATCGAAATTTCCTTCAAACATGATGAATCCCCTGTCACC
AAAGCCGACAAGGAAGTCGAGTCCGTCATACGTTCCTTCATTAACGAAAC
CTTCCCAGAGCATGGAATTATTGGTGAAGAACATGGAAGCGACTTTTCGC
AGCTTCGTAGTGAATACCAGTGGATTATCGATCCTATCGATGGTACCAAG
GCTTTCATGACAGGAAGACCAACGTTTGCAACTCTGATTGCCGTTGCCCG
CCGCGGTGTTCCTCTCTTGGGAATCGTTGACCAGCCCATATCTCAGGAAC
GCTGGATTGGCATTGCCGATGAGCAAACCACATTGAATGGCGTTCCAGTA
AGAGTGAGAGAGCCTCCTGTACTTTCCAAATGCGTCATGCAAGCCACCAC
GCCTGATATGTTTGTCGGGTGGGACGGCGTATTATTCCGAAAGCTTTCCG
CCCATGTGAAAGGCGTTGTATACGGCTCAGATTGCTATGCTTATGCGATG
CTTGCGTCAGGCTTTGCAGATCTTGTGGTCGAGGCTGACCTAAAAGTTTG
GGACTTTATGGCGTTGGTGCCGGTTGTCACCGGCGCTGGGGGTTTTATGG
GCGATTGGAATGGATTATCGTTATCTGTGGAAAGCGAGGGTCGTGTCATT
GCGGCCGCGGGGCAAGAGCTCTTTGGCGAAGTATCTCAAATCCTGAACCC
AATTGATGAAATGGGCTTATATCCTGGTAGAACAAAAGACACTTATGTTC
CAGATCCCATGCCCGAGGATCCCGGGGAAGGAAACATAGAAAGTATGACA
GGGTTTGGTTACGGTTCAGCTACAGGTTCTGGTTATATTGTGAATGTACA
GGCGCGCAGCGTGAACTCTCGATATTGTGATGTGCAGATCAAATGTCCGC
GGTATCTGGCGCCAAAAGACAACGAGCTTATCAGTATGGTGAAGAACGAA
TTGCGACGAGGAAAGGTGATTGTAACGATAGACGTCGATAATGCTGATTC
ACCCGATAGCATCATTCCAGTCAACGTGGACCGTAAAGCAGCTGCAGAGG
TTCGTCAACTACTCGATAAACTGGCAGAGGCGGCAGGGGTAACGAAAGAG
CCATCCTTGTCCGATATAATCAGTTTCTCAGAAGTATTTACTCGATCCAC
CCAGGTTGCAGCCGTGGAACATGTGCTGCCCGTCGCGAGACAGGCGGTGA
TGAATGCAGTTCGAGATCTAAGAGTGTCGCGAAGAAGAGAAGGAGTATTC
TTGCAGTACGACATCTTGCAAAGAACAAGAAAGATTAGAAAGACAGCAGA
AGAAATTCGTCATCGTCTACCGCGACGCGTGGAGGCCAAGAGAGAGTACT
TGAGAGATCTCACGAAAGGGGTGATGGAAGATGTGGACCCTAACAGGTTG
GAGGTGGAAATTATGACTTTTGCTGACAGGGTCGATGTAACTGAGGAGTT
GACTCGATTAGTAGCTCATGTTCACATTTTTGAGCTGTCATTTCTGGCAG
CAGATGAACCTGTTGGACAGAGAATGGTATTTCTGTTGCAAGAAATGCAT
CGTGAAATCACTACGCTGAGTGACAAGTGCCAAGATTCCGCAGTGAACCA
CTTGAGCGTGACGATCAAAGGGGAAATCGAGAAGATGCGCGAGCAATGCG
TCAACATTCGGTAG

Coding sequence (CDS) from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+

>Gcaud1637.t1 ID=Gcaud1637.t1|Name=Gcaud1637.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1914bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:2135..4048+ (Gracilaria caudata M_176_S67 male)
ATGGGCTTCGGAAAAACTGTATTCAACCCCTCGCAGTCGTCTTTCTCATT
CCGTAATCGTTCCGCAAACACGCTGCACAACGAAAAAGAGCCCCGCGTTG
ACTCCCCATTTCCCTATCGAAAAGGCGTTTGTGCAATCGCAGATCACGTG
TCGCAGAAGGTCACACCCGCGTCTTCCAAGGTGCCATCTGAGATCCTTGA
CACTGCCGTTAGGGCTGCGGATATTGCGGGAGCCATCATTCGAAAGTACT
TTAGAAATCCCATCGAAATTTCCTTCAAACATGATGAATCCCCTGTCACC
AAAGCCGACAAGGAAGTCGAGTCCGTCATACGTTCCTTCATTAACGAAAC
CTTCCCAGAGCATGGAATTATTGGTGAAGAACATGGAAGCGACTTTTCGC
AGCTTCGTAGTGAATACCAGTGGATTATCGATCCTATCGATGGTACCAAG
GCTTTCATGACAGGAAGACCAACGTTTGCAACTCTGATTGCCGTTGCCCG
CCGCGGTGTTCCTCTCTTGGGAATCGTTGACCAGCCCATATCTCAGGAAC
GCTGGATTGGCATTGCCGATGAGCAAACCACATTGAATGGCGTTCCAGTA
AGAGTGAGAGAGCCTCCTGTACTTTCCAAATGCGTCATGCAAGCCACCAC
GCCTGATATGTTTGTCGGGTGGGACGGCGTATTATTCCGAAAGCTTTCCG
CCCATGTGAAAGGCGTTGTATACGGCTCAGATTGCTATGCTTATGCGATG
CTTGCGTCAGGCTTTGCAGATCTTGTGGTCGAGGCTGACCTAAAAGTTTG
GGACTTTATGGCGTTGGTGCCGGTTGTCACCGGCGCTGGGGGTTTTATGG
GCGATTGGAATGGATTATCGTTATCTGTGGAAAGCGAGGGTCGTGTCATT
GCGGCCGCGGGGCAAGAGCTCTTTGGCGAAGTATCTCAAATCCTGAACCC
AATTGATGAAATGGGCTTATATCCTGGTAGAACAAAAGACACTTATGTTC
CAGATCCCATGCCCGAGGATCCCGGGGAAGGAAACATAGAAAGTATGACA
GGGTTTGGTTACGGTTCAGCTACAGGTTCTGGTTATATTGTGAATGTACA
GGCGCGCAGCGTGAACTCTCGATATTGTGATGTGCAGATCAAATGTCCGC
GGTATCTGGCGCCAAAAGACAACGAGCTTATCAGTATGGTGAAGAACGAA
TTGCGACGAGGAAAGGTGATTGTAACGATAGACGTCGATAATGCTGATTC
ACCCGATAGCATCATTCCAGTCAACGTGGACCGTAAAGCAGCTGCAGAGG
TTCGTCAACTACTCGATAAACTGGCAGAGGCGGCAGGGGTAACGAAAGAG
CCATCCTTGTCCGATATAATCAGTTTCTCAGAAGTATTTACTCGATCCAC
CCAGGTTGCAGCCGTGGAACATGTGCTGCCCGTCGCGAGACAGGCGGTGA
TGAATGCAGTTCGAGATCTAAGAGTGTCGCGAAGAAGAGAAGGAGTATTC
TTGCAGTACGACATCTTGCAAAGAACAAGAAAGATTAGAAAGACAGCAGA
AGAAATTCGTCATCGTCTACCGCGACGCGTGGAGGCCAAGAGAGAGTACT
TGAGAGATCTCACGAAAGGGGTGATGGAAGATGTGGACCCTAACAGGTTG
GAGGTGGAAATTATGACTTTTGCTGACAGGGTCGATGTAACTGAGGAGTT
GACTCGATTAGTAGCTCATGTTCACATTTTTGAGCTGTCATTTCTGGCAG
CAGATGAACCTGTTGGACAGAGAATGGTATTTCTGTTGCAAGAAATGCAT
CGTGAAATCACTACGCTGAGTGACAAGTGCCAAGATTCCGCAGTGAACCA
CTTGAGCGTGACGATCAAAGGGGAAATCGAGAAGATGCGCGAGCAATGCG
TCAACATTCGGTAG