Gcaud1634.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1634.t1
Unique NameGcaud1634.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_496_length_23667_cov_4.408424contigNODE_496_length_23667_cov_4.408424:16381..17114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1634Gcaud1634Gracilaria caudata M_176_S67 malegeneNODE_496_length_23667_cov_4.408424 16381..17114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1Gcaud1634.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_496_length_23667_cov_4.408424 16381..17114 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1.stop1Gcaud1634.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_496_length_23667_cov_4.408424 16381..16383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1.CDS1Gcaud1634.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_496_length_23667_cov_4.408424 16381..16399 -
Gcaud1634.t1.CDS2Gcaud1634.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_496_length_23667_cov_4.408424 16479..16567 -
Gcaud1634.t1.CDS3Gcaud1634.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_496_length_23667_cov_4.408424 16659..17114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1.exon1Gcaud1634.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_496_length_23667_cov_4.408424 16381..16399 -
Gcaud1634.t1.exon2Gcaud1634.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_496_length_23667_cov_4.408424 16479..16567 -
Gcaud1634.t1.exon3Gcaud1634.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_496_length_23667_cov_4.408424 16659..17114 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1.intron1Gcaud1634.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_496_length_23667_cov_4.408424 16400..16478 -
Gcaud1634.t1.intron2Gcaud1634.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_496_length_23667_cov_4.408424 16568..16658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1634.t1.start1Gcaud1634.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_496_length_23667_cov_4.408424 17112..17114 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1634.t1 ID=Gcaud1634.t1|Name=Gcaud1634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=188bp
MASGTKGVWGFVPNAPALQPSQLRLRFCSPHRRPRRPNAARMSFDAAHAL
PQLVNHLIVSCGIGLAGIVGAKATEEVRALTAGDRRADDMTALAVEIDSF
RRRRELASSPGDRDWADVTVDRFSNILVVPEPVPELESQDDLNAFDRLLK
QSTKIILRQADGRCRFRNQIQATPRANLLAVRLSRRH*
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spliced messenger RNA

>Gcaud1634.t1 ID=Gcaud1634.t1|Name=Gcaud1634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=564bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:16381..17114- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCGGCACCAAAGGTGTTTGGGGCTTTGTGCCAAATGCTCCGGC
GTTGCAACCATCGCAGTTGCGACTTCGGTTCTGCTCTCCACATCGGCGTC
CCCGCCGTCCGAATGCTGCGAGAATGTCATTTGACGCAGCGCACGCACTC
CCGCAGCTCGTCAACCATCTCATAGTGTCATGTGGTATAGGCCTAGCAGG
TATTGTTGGTGCAAAGGCAACAGAGGAGGTCCGCGCGCTAACCGCAGGTG
ACCGGCGAGCCGACGACATGACCGCACTTGCTGTTGAAATTGACAGCTTT
CGAAGACGAAGAGAACTAGCTTCCAGTCCCGGTGACCGCGACTGGGCAGA
TGTCACAGTGGACCGGTTTTCAAACATCCTAGTTGTTCCTGAACCTGTGC
CGGAACTAGAATCACAAGATGACTTGAATGCATTCGACAGATTGCTGAAG
CAATCGACGAAGATTATACTTCGTCAAGCTGATGGTCGATGTCGTTTCCG
CAACCAAATTCAGGCAACCCCGCGTGCAAATCTACTTGCCGTACGCCTGA
GTCGTAGGCACTGA
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protein sequence of Gcaud1634.t1

>Gcaud1634.t1 ID=Gcaud1634.t1|Name=Gcaud1634.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=188bp
MASGTKGVWGFVPNAPALQPSQLRLRFCSPHRRPRRPNAARMSFDAAHAL
PQLVNHLIVSCGIGLAGIVGAKATEEVRALTAGDRRADDMTALAVEIDSF
RRRRELASSPGDRDWADVTVDRFSNILVVPEPVPELESQDDLNAFDRLLK
QSTKIILRQADGRCRFRNQIQATPRANLLAVRLSRRH*
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mRNA from alignment at NODE_496_length_23667_cov_4.408424:16381..17114-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1634.t1 ID=Gcaud1634.t1|Name=Gcaud1634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=734bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:16381..17114- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCGGCACCAAAGGTGTTTGGGGCTTTGTGCCAAATGCTCCGGC
GTTGCAACCATCGCAGTTGCGACTTCGGTTCTGCTCTCCACATCGGCGTC
CCCGCCGTCCGAATGCTGCGAGAATGTCATTTGACGCAGCGCACGCACTC
CCGCAGCTCGTCAACCATCTCATAGTGTCATGTGGTATAGGCCTAGCAGG
TATTGTTGGTGCAAAGGCAACAGAGGAGGTCCGCGCGCTAACCGCAGGTG
ACCGGCGAGCCGACGACATGACCGCACTTGCTGTTGAAATTGACAGCTTT
CGAAGACGAAGAGAACTAGCTTCCAGTCCCGGTGACCGCGACTGGGCAGA
TGTCACAGTGGACCGGTTTTCAAACATCCTAGTTGTTCCTGAACCTGTGC
CGGAACTAGAATCACAAGATGACTTGAATGCATTCGACAGATTGCTGAAG
CAATCGGTAAGGACAGACGCATCGCGTACTCAGGATTCGCTTCCTTCCCT
GCCGGCCGCTCAACAATTGATAGACCCTTCTCACTTTCTGATGGGAGACG
AAGATTATACTTCGTCAAGCTGATGGTCGATGTCGTTTCCGCAACCAAAT
TCAGGCAACCCCGCGTGCAAATCTACTTGCCGTACGGTACGAAGAGCTAA
AGAGAACCATCATCGCCTCCAAACTCTATCATTCTAATTATCTGAATTCG
TTTGCCTGCTCCTAGCCTGAGTCGTAGGCACTGA
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Coding sequence (CDS) from alignment at NODE_496_length_23667_cov_4.408424:16381..17114-

>Gcaud1634.t1 ID=Gcaud1634.t1|Name=Gcaud1634.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=564bp|location=Sequence derived from alignment at NODE_496_length_23667_cov_4.408424:16381..17114- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCGGCACCAAAGGTGTTTGGGGCTTTGTGCCAAATGCTCCGGC
GTTGCAACCATCGCAGTTGCGACTTCGGTTCTGCTCTCCACATCGGCGTC
CCCGCCGTCCGAATGCTGCGAGAATGTCATTTGACGCAGCGCACGCACTC
CCGCAGCTCGTCAACCATCTCATAGTGTCATGTGGTATAGGCCTAGCAGG
TATTGTTGGTGCAAAGGCAACAGAGGAGGTCCGCGCGCTAACCGCAGGTG
ACCGGCGAGCCGACGACATGACCGCACTTGCTGTTGAAATTGACAGCTTT
CGAAGACGAAGAGAACTAGCTTCCAGTCCCGGTGACCGCGACTGGGCAGA
TGTCACAGTGGACCGGTTTTCAAACATCCTAGTTGTTCCTGAACCTGTGC
CGGAACTAGAATCACAAGATGACTTGAATGCATTCGACAGATTGCTGAAG
CAATCGACGAAGATTATACTTCGTCAAGCTGATGGTCGATGTCGTTTCCG
CAACCAAATTCAGGCAACCCCGCGTGCAAATCTACTTGCCGTACGCCTGA
GTCGTAGGCACTGA
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