Gcaud1598.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1598.t1
Unique Name	Gcaud1598.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2600_length_5190_cov_3.487154	contig	NODE_2600_length_5190_cov_3.487154:633..1688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706294.1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15281
KEGG TC	2.A.7.15
GOs	GO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue	5.46e-62
EggNOG OGs	COG5070@1\|root,KOG1444@2759\|Eukaryota
Description	nucleotide-sugar transmembrane transporter activity
COG category	GOU
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1598	Gcaud1598	Gracilaria caudata M_176_S67 male	gene	NODE_2600_length_5190_cov_3.487154 633..1688 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1598.t1.start1	Gcaud1598.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2600_length_5190_cov_3.487154 633..635 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1598.t1.CDS1	Gcaud1598.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2600_length_5190_cov_3.487154 633..1688 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1598.t1.exon1	Gcaud1598.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2600_length_5190_cov_3.487154 633..1688 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1598.t1.stop1	Gcaud1598.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2600_length_5190_cov_3.487154 1686..1688 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1598.t1	Gcaud1598.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2600_length_5190_cov_3.487154 633..1688 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+
coding sequence from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+

mRNA sequence

>Gcaud1598.t1 ID=Gcaud1598.t1|Name=Gcaud1598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=352bp
MALMLRSASDASLRRVVAAVLFFCGSSLGAIFVNKACLTHFDFNYPSSLM
ALQAALTIILLSLASVFTPSLVTITTLKRADYARLLPSTLFFVANVTVGL
CALSRVNIPMFSAFRRLTVLFVMAAEYLMLHRTHARSVVLSVFVLTFGAF
VSALGDVTFTMVGYALVFLNNALTAAYLASIKRVMGELQLDPTSLLYYTN
VIAFPIIAFIAVFTGDLQSAVYRYHADPNLRDSPSFMLALSFVAVSAFCV
NLSTSICTHITSPLTTSVAGQVKNVLQSLLGFFSWGYVPTPLNVVGLLIA
LAGQISFAIFKHASAHAPACASNEAADQPHGKQNDSETLILNAPAPTESK
P*

spliced messenger RNA

>Gcaud1598.t1 ID=Gcaud1598.t1|Name=Gcaud1598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGATGCTGCGCTCTGCGTCGGATGCGTCGCTGCGTCGCGTGGT
GGCGGCGGTGTTGTTTTTCTGCGGCAGCTCGTTGGGCGCCATCTTTGTGA
ACAAGGCGTGTCTGACGCACTTTGACTTCAACTACCCGTCGTCGCTCATG
GCGCTGCAGGCGGCGCTGACCATCATTTTGCTGTCGCTGGCGTCCGTGTT
CACGCCGTCGCTGGTGACCATTACTACGCTCAAGCGCGCGGACTACGCGC
GGCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACGGTGGGGCTT
TGCGCGTTGTCGCGCGTGAACATTCCCATGTTCTCCGCGTTCCGGCGGCT
CACGGTGCTGTTTGTGATGGCGGCGGAGTACCTGATGCTGCACAGGACGC
ACGCGCGCTCGGTGGTGCTGTCGGTGTTCGTGCTCACGTTTGGCGCGTTT
GTGTCGGCGCTGGGCGACGTCACCTTCACCATGGTGGGCTACGCGCTCGT
GTTTCTGAACAACGCGCTCACCGCTGCGTACCTGGCGTCCATCAAGCGCG
TGATGGGCGAGCTGCAACTGGACCCCACGTCGCTGTTGTACTACACCAAC
GTGATCGCGTTTCCCATCATTGCGTTCATCGCCGTTTTCACGGGCGACTT
GCAGAGCGCCGTCTACCGCTACCACGCCGACCCCAACCTGCGAGACTCGC
CGTCGTTCATGCTCGCGCTGTCGTTCGTGGCCGTGTCGGCGTTCTGCGTG
AACCTTTCCACCTCCATCTGCACGCACATCACGTCGCCGCTCACCACGTC
CGTGGCCGGGCAGGTCAAGAACGTGCTGCAGTCGCTGCTGGGCTTTTTCT
CGTGGGGCTATGTGCCCACGCCGCTCAACGTGGTCGGGCTGCTCATCGCG
CTGGCCGGGCAGATTAGTTTCGCCATCTTCAAACACGCCAGCGCGCACGC
GCCCGCGTGCGCGAGCAACGAAGCTGCGGACCAGCCACACGGCAAGCAAA
ACGACTCGGAGACGCTCATACTCAACGCGCCCGCGCCAACAGAGTCGAAG
CCATAG

protein sequence of Gcaud1598.t1

>Gcaud1598.t1 ID=Gcaud1598.t1|Name=Gcaud1598.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=352bp
MALMLRSASDASLRRVVAAVLFFCGSSLGAIFVNKACLTHFDFNYPSSLM
ALQAALTIILLSLASVFTPSLVTITTLKRADYARLLPSTLFFVANVTVGL
CALSRVNIPMFSAFRRLTVLFVMAAEYLMLHRTHARSVVLSVFVLTFGAF
VSALGDVTFTMVGYALVFLNNALTAAYLASIKRVMGELQLDPTSLLYYTN
VIAFPIIAFIAVFTGDLQSAVYRYHADPNLRDSPSFMLALSFVAVSAFCV
NLSTSICTHITSPLTTSVAGQVKNVLQSLLGFFSWGYVPTPLNVVGLLIA
LAGQISFAIFKHASAHAPACASNEAADQPHGKQNDSETLILNAPAPTESK
P*

mRNA from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1598.t1 ID=Gcaud1598.t1|Name=Gcaud1598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTGATGCTGCGCTCTGCGTCGGATGCGTCGCTGCGTCGCGTGGT
GGCGGCGGTGTTGTTTTTCTGCGGCAGCTCGTTGGGCGCCATCTTTGTGA
ACAAGGCGTGTCTGACGCACTTTGACTTCAACTACCCGTCGTCGCTCATG
GCGCTGCAGGCGGCGCTGACCATCATTTTGCTGTCGCTGGCGTCCGTGTT
CACGCCGTCGCTGGTGACCATTACTACGCTCAAGCGCGCGGACTACGCGC
GGCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACGGTGGGGCTT
TGCGCGTTGTCGCGCGTGAACATTCCCATGTTCTCCGCGTTCCGGCGGCT
CACGGTGCTGTTTGTGATGGCGGCGGAGTACCTGATGCTGCACAGGACGC
ACGCGCGCTCGGTGGTGCTGTCGGTGTTCGTGCTCACGTTTGGCGCGTTT
GTGTCGGCGCTGGGCGACGTCACCTTCACCATGGTGGGCTACGCGCTCGT
GTTTCTGAACAACGCGCTCACCGCTGCGTACCTGGCGTCCATCAAGCGCG
TGATGGGCGAGCTGCAACTGGACCCCACGTCGCTGTTGTACTACACCAAC
GTGATCGCGTTTCCCATCATTGCGTTCATCGCCGTTTTCACGGGCGACTT
GCAGAGCGCCGTCTACCGCTACCACGCCGACCCCAACCTGCGAGACTCGC
CGTCGTTCATGCTCGCGCTGTCGTTCGTGGCCGTGTCGGCGTTCTGCGTG
AACCTTTCCACCTCCATCTGCACGCACATCACGTCGCCGCTCACCACGTC
CGTGGCCGGGCAGGTCAAGAACGTGCTGCAGTCGCTGCTGGGCTTTTTCT
CGTGGGGCTATGTGCCCACGCCGCTCAACGTGGTCGGGCTGCTCATCGCG
CTGGCCGGGCAGATTAGTTTCGCCATCTTCAAACACGCCAGCGCGCACGC
GCCCGCGTGCGCGAGCAACGAAGCTGCGGACCAGCCACACGGCAAGCAAA
ACGACTCGGAGACGCTCATACTCAACGCGCCCGCGCCAACAGAGTCGAAG
CCATAG

Coding sequence (CDS) from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+

>Gcaud1598.t1 ID=Gcaud1598.t1|Name=Gcaud1598.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1056bp|location=Sequence derived from alignment at NODE_2600_length_5190_cov_3.487154:633..1688+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTGATGCTGCGCTCTGCGTCGGATGCGTCGCTGCGTCGCGTGGT
GGCGGCGGTGTTGTTTTTCTGCGGCAGCTCGTTGGGCGCCATCTTTGTGA
ACAAGGCGTGTCTGACGCACTTTGACTTCAACTACCCGTCGTCGCTCATG
GCGCTGCAGGCGGCGCTGACCATCATTTTGCTGTCGCTGGCGTCCGTGTT
CACGCCGTCGCTGGTGACCATTACTACGCTCAAGCGCGCGGACTACGCGC
GGCTGCTGCCGTCCACGCTGTTCTTCGTGGCCAATGTGACGGTGGGGCTT
TGCGCGTTGTCGCGCGTGAACATTCCCATGTTCTCCGCGTTCCGGCGGCT
CACGGTGCTGTTTGTGATGGCGGCGGAGTACCTGATGCTGCACAGGACGC
ACGCGCGCTCGGTGGTGCTGTCGGTGTTCGTGCTCACGTTTGGCGCGTTT
GTGTCGGCGCTGGGCGACGTCACCTTCACCATGGTGGGCTACGCGCTCGT
GTTTCTGAACAACGCGCTCACCGCTGCGTACCTGGCGTCCATCAAGCGCG
TGATGGGCGAGCTGCAACTGGACCCCACGTCGCTGTTGTACTACACCAAC
GTGATCGCGTTTCCCATCATTGCGTTCATCGCCGTTTTCACGGGCGACTT
GCAGAGCGCCGTCTACCGCTACCACGCCGACCCCAACCTGCGAGACTCGC
CGTCGTTCATGCTCGCGCTGTCGTTCGTGGCCGTGTCGGCGTTCTGCGTG
AACCTTTCCACCTCCATCTGCACGCACATCACGTCGCCGCTCACCACGTC
CGTGGCCGGGCAGGTCAAGAACGTGCTGCAGTCGCTGCTGGGCTTTTTCT
CGTGGGGCTATGTGCCCACGCCGCTCAACGTGGTCGGGCTGCTCATCGCG
CTGGCCGGGCAGATTAGTTTCGCCATCTTCAAACACGCCAGCGCGCACGC
GCCCGCGTGCGCGAGCAACGAAGCTGCGGACCAGCCACACGGCAAGCAAA
ACGACTCGGAGACGCTCATACTCAACGCGCCCGCGCCAACAGAGTCGAAG
CCATAG