Gcaud1587.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1587.t1
Unique Name	Gcaud1587.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	812

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_916_length_16160_cov_3.715041	contig	NODE_916_length_16160_cov_3.715041:7580..10015 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	1.92e-61
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1587	Gcaud1587	Gracilaria caudata M_176_S67 male	gene	NODE_916_length_16160_cov_3.715041 7580..10015 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1587.t1.stop1	Gcaud1587.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_916_length_16160_cov_3.715041 7580..7582 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1587.t1.CDS1	Gcaud1587.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_916_length_16160_cov_3.715041 7580..10015 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1587.t1.exon1	Gcaud1587.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_916_length_16160_cov_3.715041 7580..10015 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1587.t1.start1	Gcaud1587.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_916_length_16160_cov_3.715041 10013..10015 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1587.t1	Gcaud1587.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_916_length_16160_cov_3.715041 7580..10015 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_916_length_16160_cov_3.715041:7580..10015-
coding sequence from alignment at NODE_916_length_16160_cov_3.715041:7580..10015-

mRNA sequence

>Gcaud1587.t1 ID=Gcaud1587.t1|Name=Gcaud1587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=812bp
MEDSAGDIFNARNTTTQGVVINLAIGLAVLVSALVLYDLLRYFYPSHTFP
RNIFANLPSSRNYDASPLPLLSPPRAHPLSWVPRTLRYSELDTVRTHGLD
VALFVRFLATQAKLFAVLSVFTALVLYPTYITASNRFLPVGDPNRVVGME
IATLSNVQKQSPRLWVTLFSEVFVVATILLFLYRDLLKYAKYRRLYRARF
DNPSNYAILVQDIPAFLRNGADVYAIFEKVFPMQVVRVHMVRDAHALLTL
KKKYVTSVDRYCFFSAQSRAEPLATTAAATTPVSECSSRKSSLREREQPV
ATAPQPQQPQTPSSSAEAPHSESDLHILPYTHAPSAAPQCSRTVSQHTES
RLSRRTTQTTLFPGSDASYWKQRQQILTEQIKQAERSLDHTAPITGCAIV
VFRSKRVATLAATAPVWINATECRVSRAAEPRAVNWNRLSITPYTRRIRE
YTSFFVLTAMAIFWTVPATSIQALNNLQELADKWPDSFLTGFIENHPGFA
RFLQGILPPLILYILLLIVPLIIRLVVNFERIHSRVLLEAKIRNFIFFFY
IMSNFFYVVVIGSVFQKLKEIFENPTQIVAILSVSVPAQSTFLMKYVLIN
AFLGSSLNLLNIGRLIVRPFLLLGAKTTREKRNSDEIFSQFPFAKMYALC
CMVTLISFVYSTIAPVICVVATLYFSIAYLCHKQQLLYSHKPQFEGGGFM
FRDAWTGLLVGLYFHQLSMIGIFGLKLATPQAILSVLSLLVSIWFHNYCR
KTFLFRSKHGSLVDQADMDDEEGLRDEIPENFAELYLHPGLRSVKDVKED
ALAGITYDSKH*

spliced messenger RNA

>Gcaud1587.t1 ID=Gcaud1587.t1|Name=Gcaud1587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:7580..10015- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACTCCGCCGGCGATATCTTCAACGCGCGCAACACCACCACACA
GGGCGTCGTCATCAACCTCGCCATCGGCCTCGCCGTGCTCGTCTCCGCGC
TCGTTCTATACGACCTGCTGCGCTACTTCTATCCCTCCCACACCTTTCCG
CGCAACATCTTCGCCAACCTCCCCTCCTCCCGTAACTACGACGCCTCCCC
TCTCCCCCTGCTCTCCCCACCGCGCGCACATCCGCTCTCATGGGTGCCGC
GCACATTGCGCTACTCCGAACTGGATACCGTGCGCACGCACGGGCTTGAC
GTTGCGCTGTTCGTGCGCTTCCTGGCCACGCAGGCAAAGCTCTTTGCTGT
GTTGTCCGTGTTCACAGCGCTCGTGTTATATCCCACTTACATCACCGCTT
CTAACCGCTTTCTGCCCGTCGGTGATCCCAACCGCGTCGTGGGCATGGAA
ATCGCCACGCTCTCCAACGTGCAGAAACAGTCGCCGCGACTATGGGTCAC
ACTCTTTAGTGAGGTGTTTGTGGTGGCCACAATTCTGCTCTTCTTGTATC
GTGACCTTCTCAAGTATGCAAAGTACCGACGTTTGTACCGCGCGCGCTTT
GATAACCCGTCCAATTACGCCATCTTGGTGCAGGATATCCCCGCGTTTCT
GCGCAATGGCGCGGATGTGTACGCTATCTTCGAGAAAGTGTTTCCGATGC
AGGTGGTGCGTGTGCACATGGTACGTGATGCGCATGCGTTGCTCACGTTG
AAGAAGAAGTATGTCACCTCGGTGGACAGGTACTGCTTCTTCTCTGCGCA
GTCGCGTGCGGAACCTCTTGCAACGACTGCAGCCGCTACTACTCCCGTGT
CCGAGTGCTCCTCGCGCAAATCATCGCTGCGCGAGCGCGAACAACCTGTT
GCTACTGCTCCACAACCACAACAACCACAGACGCCATCATCAAGCGCAGA
AGCGCCGCATTCCGAATCCGACCTCCACATATTGCCGTACACGCACGCGC
CTTCCGCCGCGCCGCAGTGCTCGCGAACAGTTAGCCAACACACCGAAAGT
CGACTGTCGCGTCGAACCACCCAAACCACCCTCTTCCCCGGCTCGGACGC
CAGCTATTGGAAGCAACGTCAACAAATTCTCACTGAGCAGATTAAGCAAG
CGGAGCGCTCTCTAGACCACACCGCGCCGATCACCGGGTGCGCCATTGTG
GTGTTTCGATCTAAACGCGTGGCCACACTTGCCGCCACTGCGCCCGTGTG
GATCAACGCCACCGAATGTCGCGTGTCTCGCGCCGCGGAGCCTAGGGCTG
TGAATTGGAACCGTCTTAGTATCACGCCGTATACGCGACGTATTCGAGAG
TATACGTCGTTCTTTGTGTTGACCGCCATGGCTATCTTCTGGACCGTGCC
GGCCACCTCAATTCAGGCGCTCAACAACCTGCAGGAGCTGGCGGATAAGT
GGCCCGACTCCTTCTTGACGGGCTTCATTGAAAACCACCCGGGCTTTGCG
CGCTTTCTTCAGGGCATTCTACCACCGTTGATCCTATATATTTTGTTGCT
CATTGTGCCGCTCATCATCCGGCTGGTGGTCAACTTTGAGCGCATCCATA
GTCGTGTGCTGCTGGAGGCGAAGATTCGGAACTTCATCTTCTTCTTCTAC
ATCATGTCTAATTTCTTCTACGTCGTTGTGATCGGTTCGGTGTTTCAAAA
ACTCAAAGAGATTTTCGAGAACCCCACTCAGATCGTCGCCATTTTGTCCG
TTTCCGTGCCCGCGCAGTCCACGTTCCTTATGAAGTACGTGCTCATCAAT
GCGTTTCTGGGCAGCTCGTTGAACCTGCTCAACATTGGCCGGCTCATCGT
GCGCCCGTTCCTGCTGCTGGGGGCGAAGACCACACGCGAGAAACGCAATT
CGGACGAAATCTTCTCGCAGTTCCCATTTGCAAAGATGTATGCGTTGTGT
TGCATGGTGACTCTCATTTCGTTTGTGTACAGCACCATTGCGCCGGTCAT
CTGTGTGGTGGCTACTCTCTACTTCTCCATTGCGTACTTGTGTCACAAAC
AACAGCTGTTGTACTCGCACAAACCGCAGTTTGAAGGCGGTGGCTTCATG
TTTCGGGACGCGTGGACCGGCTTGTTGGTCGGCTTGTATTTTCACCAGCT
TTCTATGATTGGCATTTTCGGGTTGAAACTTGCAACGCCACAGGCGATTC
TTTCTGTGCTGTCGCTGCTTGTGTCCATCTGGTTTCACAACTACTGTCGG
AAGACGTTTCTTTTTCGATCGAAACATGGGAGTCTGGTGGATCAGGCTGA
TATGGACGATGAGGAGGGCCTTCGTGATGAAATTCCGGAGAACTTTGCAG
AATTGTACCTGCACCCCGGACTGAGATCTGTCAAGGACGTGAAGGAAGAT
GCGCTCGCAGGCATAACATATGATTCTAAACACTAA

protein sequence of Gcaud1587.t1

>Gcaud1587.t1 ID=Gcaud1587.t1|Name=Gcaud1587.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=812bp
MEDSAGDIFNARNTTTQGVVINLAIGLAVLVSALVLYDLLRYFYPSHTFP
RNIFANLPSSRNYDASPLPLLSPPRAHPLSWVPRTLRYSELDTVRTHGLD
VALFVRFLATQAKLFAVLSVFTALVLYPTYITASNRFLPVGDPNRVVGME
IATLSNVQKQSPRLWVTLFSEVFVVATILLFLYRDLLKYAKYRRLYRARF
DNPSNYAILVQDIPAFLRNGADVYAIFEKVFPMQVVRVHMVRDAHALLTL
KKKYVTSVDRYCFFSAQSRAEPLATTAAATTPVSECSSRKSSLREREQPV
ATAPQPQQPQTPSSSAEAPHSESDLHILPYTHAPSAAPQCSRTVSQHTES
RLSRRTTQTTLFPGSDASYWKQRQQILTEQIKQAERSLDHTAPITGCAIV
VFRSKRVATLAATAPVWINATECRVSRAAEPRAVNWNRLSITPYTRRIRE
YTSFFVLTAMAIFWTVPATSIQALNNLQELADKWPDSFLTGFIENHPGFA
RFLQGILPPLILYILLLIVPLIIRLVVNFERIHSRVLLEAKIRNFIFFFY
IMSNFFYVVVIGSVFQKLKEIFENPTQIVAILSVSVPAQSTFLMKYVLIN
AFLGSSLNLLNIGRLIVRPFLLLGAKTTREKRNSDEIFSQFPFAKMYALC
CMVTLISFVYSTIAPVICVVATLYFSIAYLCHKQQLLYSHKPQFEGGGFM
FRDAWTGLLVGLYFHQLSMIGIFGLKLATPQAILSVLSLLVSIWFHNYCR
KTFLFRSKHGSLVDQADMDDEEGLRDEIPENFAELYLHPGLRSVKDVKED
ALAGITYDSKH*

mRNA from alignment at NODE_916_length_16160_cov_3.715041:7580..10015-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1587.t1 ID=Gcaud1587.t1|Name=Gcaud1587.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:7580..10015- (Gracilaria caudata M_176_S67 male)
ATGGAGGACTCCGCCGGCGATATCTTCAACGCGCGCAACACCACCACACA
GGGCGTCGTCATCAACCTCGCCATCGGCCTCGCCGTGCTCGTCTCCGCGC
TCGTTCTATACGACCTGCTGCGCTACTTCTATCCCTCCCACACCTTTCCG
CGCAACATCTTCGCCAACCTCCCCTCCTCCCGTAACTACGACGCCTCCCC
TCTCCCCCTGCTCTCCCCACCGCGCGCACATCCGCTCTCATGGGTGCCGC
GCACATTGCGCTACTCCGAACTGGATACCGTGCGCACGCACGGGCTTGAC
GTTGCGCTGTTCGTGCGCTTCCTGGCCACGCAGGCAAAGCTCTTTGCTGT
GTTGTCCGTGTTCACAGCGCTCGTGTTATATCCCACTTACATCACCGCTT
CTAACCGCTTTCTGCCCGTCGGTGATCCCAACCGCGTCGTGGGCATGGAA
ATCGCCACGCTCTCCAACGTGCAGAAACAGTCGCCGCGACTATGGGTCAC
ACTCTTTAGTGAGGTGTTTGTGGTGGCCACAATTCTGCTCTTCTTGTATC
GTGACCTTCTCAAGTATGCAAAGTACCGACGTTTGTACCGCGCGCGCTTT
GATAACCCGTCCAATTACGCCATCTTGGTGCAGGATATCCCCGCGTTTCT
GCGCAATGGCGCGGATGTGTACGCTATCTTCGAGAAAGTGTTTCCGATGC
AGGTGGTGCGTGTGCACATGGTACGTGATGCGCATGCGTTGCTCACGTTG
AAGAAGAAGTATGTCACCTCGGTGGACAGGTACTGCTTCTTCTCTGCGCA
GTCGCGTGCGGAACCTCTTGCAACGACTGCAGCCGCTACTACTCCCGTGT
CCGAGTGCTCCTCGCGCAAATCATCGCTGCGCGAGCGCGAACAACCTGTT
GCTACTGCTCCACAACCACAACAACCACAGACGCCATCATCAAGCGCAGA
AGCGCCGCATTCCGAATCCGACCTCCACATATTGCCGTACACGCACGCGC
CTTCCGCCGCGCCGCAGTGCTCGCGAACAGTTAGCCAACACACCGAAAGT
CGACTGTCGCGTCGAACCACCCAAACCACCCTCTTCCCCGGCTCGGACGC
CAGCTATTGGAAGCAACGTCAACAAATTCTCACTGAGCAGATTAAGCAAG
CGGAGCGCTCTCTAGACCACACCGCGCCGATCACCGGGTGCGCCATTGTG
GTGTTTCGATCTAAACGCGTGGCCACACTTGCCGCCACTGCGCCCGTGTG
GATCAACGCCACCGAATGTCGCGTGTCTCGCGCCGCGGAGCCTAGGGCTG
TGAATTGGAACCGTCTTAGTATCACGCCGTATACGCGACGTATTCGAGAG
TATACGTCGTTCTTTGTGTTGACCGCCATGGCTATCTTCTGGACCGTGCC
GGCCACCTCAATTCAGGCGCTCAACAACCTGCAGGAGCTGGCGGATAAGT
GGCCCGACTCCTTCTTGACGGGCTTCATTGAAAACCACCCGGGCTTTGCG
CGCTTTCTTCAGGGCATTCTACCACCGTTGATCCTATATATTTTGTTGCT
CATTGTGCCGCTCATCATCCGGCTGGTGGTCAACTTTGAGCGCATCCATA
GTCGTGTGCTGCTGGAGGCGAAGATTCGGAACTTCATCTTCTTCTTCTAC
ATCATGTCTAATTTCTTCTACGTCGTTGTGATCGGTTCGGTGTTTCAAAA
ACTCAAAGAGATTTTCGAGAACCCCACTCAGATCGTCGCCATTTTGTCCG
TTTCCGTGCCCGCGCAGTCCACGTTCCTTATGAAGTACGTGCTCATCAAT
GCGTTTCTGGGCAGCTCGTTGAACCTGCTCAACATTGGCCGGCTCATCGT
GCGCCCGTTCCTGCTGCTGGGGGCGAAGACCACACGCGAGAAACGCAATT
CGGACGAAATCTTCTCGCAGTTCCCATTTGCAAAGATGTATGCGTTGTGT
TGCATGGTGACTCTCATTTCGTTTGTGTACAGCACCATTGCGCCGGTCAT
CTGTGTGGTGGCTACTCTCTACTTCTCCATTGCGTACTTGTGTCACAAAC
AACAGCTGTTGTACTCGCACAAACCGCAGTTTGAAGGCGGTGGCTTCATG
TTTCGGGACGCGTGGACCGGCTTGTTGGTCGGCTTGTATTTTCACCAGCT
TTCTATGATTGGCATTTTCGGGTTGAAACTTGCAACGCCACAGGCGATTC
TTTCTGTGCTGTCGCTGCTTGTGTCCATCTGGTTTCACAACTACTGTCGG
AAGACGTTTCTTTTTCGATCGAAACATGGGAGTCTGGTGGATCAGGCTGA
TATGGACGATGAGGAGGGCCTTCGTGATGAAATTCCGGAGAACTTTGCAG
AATTGTACCTGCACCCCGGACTGAGATCTGTCAAGGACGTGAAGGAAGAT
GCGCTCGCAGGCATAACATATGATTCTAAACACTAA

Coding sequence (CDS) from alignment at NODE_916_length_16160_cov_3.715041:7580..10015-

>Gcaud1587.t1 ID=Gcaud1587.t1|Name=Gcaud1587.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2436bp|location=Sequence derived from alignment at NODE_916_length_16160_cov_3.715041:7580..10015- (Gracilaria caudata M_176_S67 male)
ATGGAGGACTCCGCCGGCGATATCTTCAACGCGCGCAACACCACCACACA
GGGCGTCGTCATCAACCTCGCCATCGGCCTCGCCGTGCTCGTCTCCGCGC
TCGTTCTATACGACCTGCTGCGCTACTTCTATCCCTCCCACACCTTTCCG
CGCAACATCTTCGCCAACCTCCCCTCCTCCCGTAACTACGACGCCTCCCC
TCTCCCCCTGCTCTCCCCACCGCGCGCACATCCGCTCTCATGGGTGCCGC
GCACATTGCGCTACTCCGAACTGGATACCGTGCGCACGCACGGGCTTGAC
GTTGCGCTGTTCGTGCGCTTCCTGGCCACGCAGGCAAAGCTCTTTGCTGT
GTTGTCCGTGTTCACAGCGCTCGTGTTATATCCCACTTACATCACCGCTT
CTAACCGCTTTCTGCCCGTCGGTGATCCCAACCGCGTCGTGGGCATGGAA
ATCGCCACGCTCTCCAACGTGCAGAAACAGTCGCCGCGACTATGGGTCAC
ACTCTTTAGTGAGGTGTTTGTGGTGGCCACAATTCTGCTCTTCTTGTATC
GTGACCTTCTCAAGTATGCAAAGTACCGACGTTTGTACCGCGCGCGCTTT
GATAACCCGTCCAATTACGCCATCTTGGTGCAGGATATCCCCGCGTTTCT
GCGCAATGGCGCGGATGTGTACGCTATCTTCGAGAAAGTGTTTCCGATGC
AGGTGGTGCGTGTGCACATGGTACGTGATGCGCATGCGTTGCTCACGTTG
AAGAAGAAGTATGTCACCTCGGTGGACAGGTACTGCTTCTTCTCTGCGCA
GTCGCGTGCGGAACCTCTTGCAACGACTGCAGCCGCTACTACTCCCGTGT
CCGAGTGCTCCTCGCGCAAATCATCGCTGCGCGAGCGCGAACAACCTGTT
GCTACTGCTCCACAACCACAACAACCACAGACGCCATCATCAAGCGCAGA
AGCGCCGCATTCCGAATCCGACCTCCACATATTGCCGTACACGCACGCGC
CTTCCGCCGCGCCGCAGTGCTCGCGAACAGTTAGCCAACACACCGAAAGT
CGACTGTCGCGTCGAACCACCCAAACCACCCTCTTCCCCGGCTCGGACGC
CAGCTATTGGAAGCAACGTCAACAAATTCTCACTGAGCAGATTAAGCAAG
CGGAGCGCTCTCTAGACCACACCGCGCCGATCACCGGGTGCGCCATTGTG
GTGTTTCGATCTAAACGCGTGGCCACACTTGCCGCCACTGCGCCCGTGTG
GATCAACGCCACCGAATGTCGCGTGTCTCGCGCCGCGGAGCCTAGGGCTG
TGAATTGGAACCGTCTTAGTATCACGCCGTATACGCGACGTATTCGAGAG
TATACGTCGTTCTTTGTGTTGACCGCCATGGCTATCTTCTGGACCGTGCC
GGCCACCTCAATTCAGGCGCTCAACAACCTGCAGGAGCTGGCGGATAAGT
GGCCCGACTCCTTCTTGACGGGCTTCATTGAAAACCACCCGGGCTTTGCG
CGCTTTCTTCAGGGCATTCTACCACCGTTGATCCTATATATTTTGTTGCT
CATTGTGCCGCTCATCATCCGGCTGGTGGTCAACTTTGAGCGCATCCATA
GTCGTGTGCTGCTGGAGGCGAAGATTCGGAACTTCATCTTCTTCTTCTAC
ATCATGTCTAATTTCTTCTACGTCGTTGTGATCGGTTCGGTGTTTCAAAA
ACTCAAAGAGATTTTCGAGAACCCCACTCAGATCGTCGCCATTTTGTCCG
TTTCCGTGCCCGCGCAGTCCACGTTCCTTATGAAGTACGTGCTCATCAAT
GCGTTTCTGGGCAGCTCGTTGAACCTGCTCAACATTGGCCGGCTCATCGT
GCGCCCGTTCCTGCTGCTGGGGGCGAAGACCACACGCGAGAAACGCAATT
CGGACGAAATCTTCTCGCAGTTCCCATTTGCAAAGATGTATGCGTTGTGT
TGCATGGTGACTCTCATTTCGTTTGTGTACAGCACCATTGCGCCGGTCAT
CTGTGTGGTGGCTACTCTCTACTTCTCCATTGCGTACTTGTGTCACAAAC
AACAGCTGTTGTACTCGCACAAACCGCAGTTTGAAGGCGGTGGCTTCATG
TTTCGGGACGCGTGGACCGGCTTGTTGGTCGGCTTGTATTTTCACCAGCT
TTCTATGATTGGCATTTTCGGGTTGAAACTTGCAACGCCACAGGCGATTC
TTTCTGTGCTGTCGCTGCTTGTGTCCATCTGGTTTCACAACTACTGTCGG
AAGACGTTTCTTTTTCGATCGAAACATGGGAGTCTGGTGGATCAGGCTGA
TATGGACGATGAGGAGGGCCTTCGTGATGAAATTCCGGAGAACTTTGCAG
AATTGTACCTGCACCCCGGACTGAGATCTGTCAAGGACGTGAAGGAAGAT
GCGCTCGCAGGCATAACATATGATTCTAAACACTAA