Gcaud1577.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1577.t1
Unique Name	Gcaud1577.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2866_length_4534_cov_3.293495	contig	NODE_2866_length_4534_cov_3.293495:683..2587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1577	Gcaud1577	Gracilaria caudata M_176_S67 male	gene	NODE_2866_length_4534_cov_3.293495 683..2587 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1577.t1.stop1	Gcaud1577.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2866_length_4534_cov_3.293495 683..685 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1577.t1.CDS1	Gcaud1577.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2866_length_4534_cov_3.293495 683..2587 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1577.t1.exon1	Gcaud1577.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2866_length_4534_cov_3.293495 683..2587 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1577.t1.start1	Gcaud1577.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2866_length_4534_cov_3.293495 2585..2587 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1577.t1	Gcaud1577.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2866_length_4534_cov_3.293495 683..2587 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2866_length_4534_cov_3.293495:683..2587-
coding sequence from alignment at NODE_2866_length_4534_cov_3.293495:683..2587-

mRNA sequence

>Gcaud1577.t1 ID=Gcaud1577.t1|Name=Gcaud1577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MLALTLLTLIALCVHDAHAAFNYTFASPSPTRHAAAYTVIDVTVAPHTAP
PSEAVRQFGFFFHHTPTPSASVTPTPPSIQAPVVISPNTSLPVKTPTPTP
HLASARRVAVPLSNPSPAVSPYPTPTSLSVPIVTALTSPFDGHSSPSWVK
RVIAIPLRMPQRHNLTHYTPPPTASAPKAERISLDVQRDLLMPPTQFDPI
TSVSPNPSSLLVIAPSAPVTTTTSAPEMATVRKDYPIPSFAQVVTPLPPR
PSASENVIPVNVRFQKHIYASPLHMPSATPAPSREQFASEHHMHMLARSY
LPGSPYETDVRVTPQPSNTRRYTVTPSVAPSAQLTNVVRTLSGRRFHSVK
TDQQTVHCAYVSPSATPSLVPTKAAIHGLDTVTRRRVAVKVLSRRRFRVR
NQHRRRIPLIRVENETATAPAPSPTFTPRHTKPDMDTVAPSVTPSKIPTT
YGVKMMNSRRIPSVKTNVRTTPTPETTQNSSIVEKDENSSRPAYPTFGPT
PSISVSDRTAQYTAVMIASSGSPSPSDVHDMFEDTGHFSAEEGKSTSLLD
ALISSSIEPEEYCDSVKQCMCAVFHESLMSHSLLSYCGKLDTLTSSVCEQ
SREAHIFFEFWRSRQGAEGMALVNECAPDIFKIW*

spliced messenger RNA

>Gcaud1577.t1 ID=Gcaud1577.t1|Name=Gcaud1577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:683..2587- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCACTCACTCTACTAACTCTCATTGCGCTCTGCGTCCATGATGC
CCACGCTGCTTTCAACTACACTTTCGCCTCGCCCTCTCCCACACGTCATG
CGGCCGCCTACACCGTCATAGACGTCACCGTCGCCCCTCACACCGCCCCA
CCCTCCGAGGCTGTTCGTCAGTTTGGTTTCTTCTTCCACCACACCCCCAC
GCCGTCAGCTTCTGTAACTCCCACACCTCCCTCCATTCAAGCTCCGGTCG
TAATCTCCCCGAACACTTCACTACCCGTGAAGACGCCCACCCCTACTCCG
CATCTTGCTAGTGCTCGTCGAGTTGCCGTGCCATTGTCCAACCCGTCGCC
GGCCGTATCTCCTTACCCCACGCCCACATCGCTATCGGTTCCCATCGTCA
CTGCACTCACCTCTCCCTTCGACGGTCACTCATCTCCATCCTGGGTCAAA
CGCGTCATCGCCATCCCGCTCCGCATGCCGCAACGTCACAACCTCACACA
CTACACCCCGCCTCCCACCGCCTCCGCCCCTAAAGCCGAGCGCATCTCGC
TTGATGTCCAGCGCGATCTTCTCATGCCTCCCACCCAGTTCGACCCCATC
ACATCCGTTTCTCCGAATCCGTCCTCGCTCCTGGTCATCGCCCCCAGCGC
ACCAGTGACCACTACCACATCCGCGCCGGAGATGGCAACCGTGCGAAAAG
ACTACCCTATTCCATCGTTCGCCCAAGTCGTCACGCCGTTGCCACCTCGC
CCGAGTGCGTCGGAGAACGTCATCCCCGTCAACGTTCGTTTCCAGAAACA
CATTTATGCGTCTCCTCTTCACATGCCGTCCGCCACCCCAGCCCCTTCGC
GGGAGCAATTCGCTTCCGAGCATCACATGCACATGCTCGCACGAAGCTAC
CTTCCAGGAAGCCCCTATGAAACCGACGTACGGGTCACTCCGCAGCCGTC
AAACACCCGTCGCTACACCGTCACACCGTCTGTTGCACCATCAGCGCAAC
TGACCAACGTCGTGAGAACACTTAGCGGCCGCCGATTTCATTCGGTCAAA
ACCGACCAGCAAACCGTACACTGCGCATATGTTTCTCCAAGCGCTACACC
GTCCCTAGTGCCGACAAAAGCTGCGATTCATGGCCTCGACACTGTGACCC
GCCGACGAGTCGCTGTCAAAGTTCTGTCCCGTCGTCGGTTCCGCGTCCGA
AATCAGCATCGCCGTCGGATCCCGTTAATCAGAGTGGAAAACGAAACGGC
AACCGCTCCCGCCCCGTCTCCTACTTTTACACCGCGGCACACGAAGCCTG
ACATGGACACTGTTGCTCCGTCTGTAACACCATCTAAAATTCCGACGACA
TATGGAGTGAAAATGATGAACAGCCGTCGAATCCCCTCTGTGAAGACCAA
TGTGAGAACGACACCCACTCCTGAAACAACGCAGAACAGCAGCATCGTTG
AAAAAGATGAAAACTCTTCACGACCCGCGTACCCGACGTTTGGTCCCACT
CCATCAATCTCTGTGAGTGATCGTACTGCGCAATATACTGCTGTGATGAT
AGCGAGCTCGGGTTCACCGTCACCCTCCGATGTTCATGACATGTTTGAGG
ATACAGGGCATTTCTCCGCGGAAGAAGGCAAGAGCACCAGTCTGTTGGAC
GCACTCATTTCATCGTCTATTGAGCCAGAAGAGTATTGTGATTCTGTGAA
GCAATGTATGTGTGCGGTCTTCCATGAAAGCTTGATGAGCCATTCGCTTC
TCTCCTACTGCGGTAAGCTCGATACGCTTACTTCCTCGGTTTGCGAACAA
TCTAGAGAGGCACACATCTTCTTTGAGTTTTGGAGATCCAGGCAGGGAGC
GGAAGGAATGGCACTTGTGAACGAATGTGCACCGGACATCTTCAAGATTT
GGTAG

protein sequence of Gcaud1577.t1

>Gcaud1577.t1 ID=Gcaud1577.t1|Name=Gcaud1577.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MLALTLLTLIALCVHDAHAAFNYTFASPSPTRHAAAYTVIDVTVAPHTAP
PSEAVRQFGFFFHHTPTPSASVTPTPPSIQAPVVISPNTSLPVKTPTPTP
HLASARRVAVPLSNPSPAVSPYPTPTSLSVPIVTALTSPFDGHSSPSWVK
RVIAIPLRMPQRHNLTHYTPPPTASAPKAERISLDVQRDLLMPPTQFDPI
TSVSPNPSSLLVIAPSAPVTTTTSAPEMATVRKDYPIPSFAQVVTPLPPR
PSASENVIPVNVRFQKHIYASPLHMPSATPAPSREQFASEHHMHMLARSY
LPGSPYETDVRVTPQPSNTRRYTVTPSVAPSAQLTNVVRTLSGRRFHSVK
TDQQTVHCAYVSPSATPSLVPTKAAIHGLDTVTRRRVAVKVLSRRRFRVR
NQHRRRIPLIRVENETATAPAPSPTFTPRHTKPDMDTVAPSVTPSKIPTT
YGVKMMNSRRIPSVKTNVRTTPTPETTQNSSIVEKDENSSRPAYPTFGPT
PSISVSDRTAQYTAVMIASSGSPSPSDVHDMFEDTGHFSAEEGKSTSLLD
ALISSSIEPEEYCDSVKQCMCAVFHESLMSHSLLSYCGKLDTLTSSVCEQ
SREAHIFFEFWRSRQGAEGMALVNECAPDIFKIW*

mRNA from alignment at NODE_2866_length_4534_cov_3.293495:683..2587-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1577.t1 ID=Gcaud1577.t1|Name=Gcaud1577.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:683..2587- (Gracilaria caudata M_176_S67 male)
ATGCTCGCACTCACTCTACTAACTCTCATTGCGCTCTGCGTCCATGATGC
CCACGCTGCTTTCAACTACACTTTCGCCTCGCCCTCTCCCACACGTCATG
CGGCCGCCTACACCGTCATAGACGTCACCGTCGCCCCTCACACCGCCCCA
CCCTCCGAGGCTGTTCGTCAGTTTGGTTTCTTCTTCCACCACACCCCCAC
GCCGTCAGCTTCTGTAACTCCCACACCTCCCTCCATTCAAGCTCCGGTCG
TAATCTCCCCGAACACTTCACTACCCGTGAAGACGCCCACCCCTACTCCG
CATCTTGCTAGTGCTCGTCGAGTTGCCGTGCCATTGTCCAACCCGTCGCC
GGCCGTATCTCCTTACCCCACGCCCACATCGCTATCGGTTCCCATCGTCA
CTGCACTCACCTCTCCCTTCGACGGTCACTCATCTCCATCCTGGGTCAAA
CGCGTCATCGCCATCCCGCTCCGCATGCCGCAACGTCACAACCTCACACA
CTACACCCCGCCTCCCACCGCCTCCGCCCCTAAAGCCGAGCGCATCTCGC
TTGATGTCCAGCGCGATCTTCTCATGCCTCCCACCCAGTTCGACCCCATC
ACATCCGTTTCTCCGAATCCGTCCTCGCTCCTGGTCATCGCCCCCAGCGC
ACCAGTGACCACTACCACATCCGCGCCGGAGATGGCAACCGTGCGAAAAG
ACTACCCTATTCCATCGTTCGCCCAAGTCGTCACGCCGTTGCCACCTCGC
CCGAGTGCGTCGGAGAACGTCATCCCCGTCAACGTTCGTTTCCAGAAACA
CATTTATGCGTCTCCTCTTCACATGCCGTCCGCCACCCCAGCCCCTTCGC
GGGAGCAATTCGCTTCCGAGCATCACATGCACATGCTCGCACGAAGCTAC
CTTCCAGGAAGCCCCTATGAAACCGACGTACGGGTCACTCCGCAGCCGTC
AAACACCCGTCGCTACACCGTCACACCGTCTGTTGCACCATCAGCGCAAC
TGACCAACGTCGTGAGAACACTTAGCGGCCGCCGATTTCATTCGGTCAAA
ACCGACCAGCAAACCGTACACTGCGCATATGTTTCTCCAAGCGCTACACC
GTCCCTAGTGCCGACAAAAGCTGCGATTCATGGCCTCGACACTGTGACCC
GCCGACGAGTCGCTGTCAAAGTTCTGTCCCGTCGTCGGTTCCGCGTCCGA
AATCAGCATCGCCGTCGGATCCCGTTAATCAGAGTGGAAAACGAAACGGC
AACCGCTCCCGCCCCGTCTCCTACTTTTACACCGCGGCACACGAAGCCTG
ACATGGACACTGTTGCTCCGTCTGTAACACCATCTAAAATTCCGACGACA
TATGGAGTGAAAATGATGAACAGCCGTCGAATCCCCTCTGTGAAGACCAA
TGTGAGAACGACACCCACTCCTGAAACAACGCAGAACAGCAGCATCGTTG
AAAAAGATGAAAACTCTTCACGACCCGCGTACCCGACGTTTGGTCCCACT
CCATCAATCTCTGTGAGTGATCGTACTGCGCAATATACTGCTGTGATGAT
AGCGAGCTCGGGTTCACCGTCACCCTCCGATGTTCATGACATGTTTGAGG
ATACAGGGCATTTCTCCGCGGAAGAAGGCAAGAGCACCAGTCTGTTGGAC
GCACTCATTTCATCGTCTATTGAGCCAGAAGAGTATTGTGATTCTGTGAA
GCAATGTATGTGTGCGGTCTTCCATGAAAGCTTGATGAGCCATTCGCTTC
TCTCCTACTGCGGTAAGCTCGATACGCTTACTTCCTCGGTTTGCGAACAA
TCTAGAGAGGCACACATCTTCTTTGAGTTTTGGAGATCCAGGCAGGGAGC
GGAAGGAATGGCACTTGTGAACGAATGTGCACCGGACATCTTCAAGATTT
GGTAG

Coding sequence (CDS) from alignment at NODE_2866_length_4534_cov_3.293495:683..2587-

>Gcaud1577.t1 ID=Gcaud1577.t1|Name=Gcaud1577.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_2866_length_4534_cov_3.293495:683..2587- (Gracilaria caudata M_176_S67 male)
ATGCTCGCACTCACTCTACTAACTCTCATTGCGCTCTGCGTCCATGATGC
CCACGCTGCTTTCAACTACACTTTCGCCTCGCCCTCTCCCACACGTCATG
CGGCCGCCTACACCGTCATAGACGTCACCGTCGCCCCTCACACCGCCCCA
CCCTCCGAGGCTGTTCGTCAGTTTGGTTTCTTCTTCCACCACACCCCCAC
GCCGTCAGCTTCTGTAACTCCCACACCTCCCTCCATTCAAGCTCCGGTCG
TAATCTCCCCGAACACTTCACTACCCGTGAAGACGCCCACCCCTACTCCG
CATCTTGCTAGTGCTCGTCGAGTTGCCGTGCCATTGTCCAACCCGTCGCC
GGCCGTATCTCCTTACCCCACGCCCACATCGCTATCGGTTCCCATCGTCA
CTGCACTCACCTCTCCCTTCGACGGTCACTCATCTCCATCCTGGGTCAAA
CGCGTCATCGCCATCCCGCTCCGCATGCCGCAACGTCACAACCTCACACA
CTACACCCCGCCTCCCACCGCCTCCGCCCCTAAAGCCGAGCGCATCTCGC
TTGATGTCCAGCGCGATCTTCTCATGCCTCCCACCCAGTTCGACCCCATC
ACATCCGTTTCTCCGAATCCGTCCTCGCTCCTGGTCATCGCCCCCAGCGC
ACCAGTGACCACTACCACATCCGCGCCGGAGATGGCAACCGTGCGAAAAG
ACTACCCTATTCCATCGTTCGCCCAAGTCGTCACGCCGTTGCCACCTCGC
CCGAGTGCGTCGGAGAACGTCATCCCCGTCAACGTTCGTTTCCAGAAACA
CATTTATGCGTCTCCTCTTCACATGCCGTCCGCCACCCCAGCCCCTTCGC
GGGAGCAATTCGCTTCCGAGCATCACATGCACATGCTCGCACGAAGCTAC
CTTCCAGGAAGCCCCTATGAAACCGACGTACGGGTCACTCCGCAGCCGTC
AAACACCCGTCGCTACACCGTCACACCGTCTGTTGCACCATCAGCGCAAC
TGACCAACGTCGTGAGAACACTTAGCGGCCGCCGATTTCATTCGGTCAAA
ACCGACCAGCAAACCGTACACTGCGCATATGTTTCTCCAAGCGCTACACC
GTCCCTAGTGCCGACAAAAGCTGCGATTCATGGCCTCGACACTGTGACCC
GCCGACGAGTCGCTGTCAAAGTTCTGTCCCGTCGTCGGTTCCGCGTCCGA
AATCAGCATCGCCGTCGGATCCCGTTAATCAGAGTGGAAAACGAAACGGC
AACCGCTCCCGCCCCGTCTCCTACTTTTACACCGCGGCACACGAAGCCTG
ACATGGACACTGTTGCTCCGTCTGTAACACCATCTAAAATTCCGACGACA
TATGGAGTGAAAATGATGAACAGCCGTCGAATCCCCTCTGTGAAGACCAA
TGTGAGAACGACACCCACTCCTGAAACAACGCAGAACAGCAGCATCGTTG
AAAAAGATGAAAACTCTTCACGACCCGCGTACCCGACGTTTGGTCCCACT
CCATCAATCTCTGTGAGTGATCGTACTGCGCAATATACTGCTGTGATGAT
AGCGAGCTCGGGTTCACCGTCACCCTCCGATGTTCATGACATGTTTGAGG
ATACAGGGCATTTCTCCGCGGAAGAAGGCAAGAGCACCAGTCTGTTGGAC
GCACTCATTTCATCGTCTATTGAGCCAGAAGAGTATTGTGATTCTGTGAA
GCAATGTATGTGTGCGGTCTTCCATGAAAGCTTGATGAGCCATTCGCTTC
TCTCCTACTGCGGTAAGCTCGATACGCTTACTTCCTCGGTTTGCGAACAA
TCTAGAGAGGCACACATCTTCTTTGAGTTTTGGAGATCCAGGCAGGGAGC
GGAAGGAATGGCACTTGTGAACGAATGTGCACCGGACATCTTCAAGATTT
GGTAG