Gcaud1536.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1536.t1
Unique NameGcaud1536.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2780_length_4706_cov_3.815601contigNODE_2780_length_4706_cov_3.815601:416..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706915.1
Preferred namePRMT8
PFAMsMethyltransf_25,PrmA
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC02120,RC03388,RC03390
KEGG koko:K11434,ko:K11439
KEGG ReactionR11216,R11217,R11219
KEGG Pathwayko04068,ko04922,map04068,map04922
GOsGO:0000075,GO:0000077,GO:0000166,GO:0000278,GO:0000902,GO:0000904,GO:0001701,GO:0001889,GO:0001932,GO:0001933,GO:0001934,GO:0002682,GO:0002683,GO:0002684,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006479,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007552,GO:0007568,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008327,GO:0008340,GO:0008469,GO:0008757,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009898,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010259,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010883,GO:0010948,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016273,GO:0016274,GO:0016275,GO:0016358,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019919,GO:0021532,GO:0021903,GO:0021915,GO:0022008,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030182,GO:0030330,GO:0030519,GO:0030917,GO:0031056,GO:0031099,GO:0031100,GO:0031175,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031554,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032091,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032784,GO:0032786,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034243,GO:0034613,GO:0034708,GO:0034709,GO:0034969,GO:0035241,GO:0035242,GO:0035246,GO:0035247,GO:0035295,GO:0035556,GO:0036094,GO:0036211,GO:0042054,GO:0042127,GO:0042325,GO:0042326,GO:0042327,GO:0042594,GO:0042770,GO:0042802,GO:0042803,GO:0042886,GO:0043009,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043242,GO:0043244,GO:0043393,GO:0043408,GO:0043410,GO:0043412,GO:0043414,GO:0043565,GO:0043933,GO:0043985,GO:0044020,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044877,GO:0045184,GO:0045595,GO:0045596,GO:0045597,GO:0045637,GO:0045638,GO:0045639,GO:0045646,GO:0045648,GO:0045652,GO:0045653,GO:0045786,GO:0045787,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046658,GO:0046907,GO:0046982,GO:0046983,GO:0046984,GO:0046985,GO:0048037,GO:0048273,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048732,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050657,GO:0050658,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051028,GO:0051093,GO:0051094,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060567,GO:0061008,GO:0061062,GO:0061065,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070304,GO:0070727,GO:0071156,GO:0071158,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0097159,GO:0097421,GO:0098552,GO:0098562,GO:0098753,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1900180,GO:1900182,GO:1900744,GO:1900745,GO:1901265,GO:1901363,GO:1901564,GO:1901681,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1903708,GO:1903827,GO:1903829,GO:1904047,GO:1905909,GO:1905952,GO:1990234,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Evalue1.54e-159
EggNOG OGsCOG0500@1|root,KOG1499@2759|Eukaryota
EC2.1.1.319
Descriptionprotein-arginine omega-N asymmetric methyltransferase activity
COG categoryQ
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1536Gcaud1536Gracilaria caudata M_176_S67 malegeneNODE_2780_length_4706_cov_3.815601 416..1543 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1536.t1.start1Gcaud1536.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2780_length_4706_cov_3.815601 416..418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1536.t1.CDS1Gcaud1536.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2780_length_4706_cov_3.815601 416..1543 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1536.t1.exon1Gcaud1536.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2780_length_4706_cov_3.815601 416..1543 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1536.t1.stop1Gcaud1536.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2780_length_4706_cov_3.815601 1541..1543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1536.t1Gcaud1536.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2780_length_4706_cov_3.815601 416..1543 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1536.t1 ID=Gcaud1536.t1|Name=Gcaud1536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MSPATELNKPVQMDESVNSPKSGAKDAPQQLLNRLLPEDVVPGVIADADF
DMTSSDYYFNSYAHFGIHEEMLKDEVRTRSYMRAIKDNPHLFEGKTVMDV
GCGTGVLSIFAAQAGAKKVYAVECSKIVDQAKMIISDNGFSDVIDVVETK
VEDMELDEKVDIIISEWMGYFLFYESMLDTVLFARDKWLKPGGLMFPDKA
TLYLCAIEDAHYKAEKIDFWDNVYGLNMSCIKNVALTEPIVDTVDPEQVM
TNVCAVFPIDTTTVRKEQLSFAMPFSLMAIRNDYAHALVAYFDVEFSHCL
KPVSFATGPHVKPTHWKQTVLYLDRALPFKQGEVLEGVLACRPNNKNPRD
LDIAVEYSFQGGLTSAKNLLRYRLR*
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spliced messenger RNA

>Gcaud1536.t1 ID=Gcaud1536.t1|Name=Gcaud1536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:416..1543+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGGCGACTGAACTGAACAAGCCTGTGCAGATGGACGAGTCGGT
CAATTCGCCCAAATCCGGCGCCAAGGACGCTCCGCAACAGCTACTCAACA
GATTGCTGCCAGAGGATGTAGTGCCCGGCGTGATAGCAGATGCCGACTTT
GATATGACGTCGTCCGATTATTACTTCAATTCGTACGCCCACTTTGGCAT
TCACGAGGAAATGCTCAAGGATGAGGTGCGAACAAGGAGTTATATGCGCG
CCATTAAGGATAACCCGCATTTGTTTGAGGGCAAGACCGTCATGGACGTT
GGCTGCGGTACAGGTGTGTTGAGTATCTTTGCGGCACAGGCCGGTGCGAA
AAAGGTGTATGCGGTGGAATGTTCAAAGATTGTGGATCAGGCCAAGATGA
TTATCTCGGATAATGGCTTCTCAGACGTCATAGACGTAGTAGAGACCAAG
GTTGAGGACATGGAGCTGGACGAAAAGGTCGACATAATCATCTCCGAATG
GATGGGATACTTTCTGTTCTACGAATCCATGTTAGACACCGTGTTGTTTG
CGCGCGATAAGTGGCTCAAGCCCGGAGGGCTCATGTTCCCGGACAAGGCC
ACATTGTATCTGTGTGCCATTGAAGACGCGCATTACAAAGCGGAGAAAAT
CGACTTTTGGGATAATGTGTACGGGCTCAACATGTCGTGCATAAAGAACG
TAGCGCTCACCGAGCCCATCGTGGACACCGTCGATCCGGAACAGGTGATG
ACCAACGTGTGCGCGGTATTTCCAATCGACACCACCACTGTGCGCAAGGA
GCAGCTGTCGTTTGCCATGCCGTTCAGTCTGATGGCCATTCGTAACGACT
ACGCACACGCGCTGGTGGCGTATTTCGACGTTGAGTTTTCACACTGTTTG
AAGCCGGTGTCGTTTGCCACGGGCCCACATGTGAAACCGACTCATTGGAA
GCAGACGGTGCTGTATCTGGACAGAGCTTTGCCATTCAAACAGGGAGAGG
TGCTCGAGGGGGTTCTGGCTTGTCGTCCGAACAACAAGAACCCGAGGGAT
CTGGATATTGCGGTAGAGTACAGTTTTCAGGGCGGCTTGACCAGCGCCAA
GAACTTACTGCGATATCGGCTGCGGTGA
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protein sequence of Gcaud1536.t1

>Gcaud1536.t1 ID=Gcaud1536.t1|Name=Gcaud1536.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MSPATELNKPVQMDESVNSPKSGAKDAPQQLLNRLLPEDVVPGVIADADF
DMTSSDYYFNSYAHFGIHEEMLKDEVRTRSYMRAIKDNPHLFEGKTVMDV
GCGTGVLSIFAAQAGAKKVYAVECSKIVDQAKMIISDNGFSDVIDVVETK
VEDMELDEKVDIIISEWMGYFLFYESMLDTVLFARDKWLKPGGLMFPDKA
TLYLCAIEDAHYKAEKIDFWDNVYGLNMSCIKNVALTEPIVDTVDPEQVM
TNVCAVFPIDTTTVRKEQLSFAMPFSLMAIRNDYAHALVAYFDVEFSHCL
KPVSFATGPHVKPTHWKQTVLYLDRALPFKQGEVLEGVLACRPNNKNPRD
LDIAVEYSFQGGLTSAKNLLRYRLR*
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mRNA from alignment at NODE_2780_length_4706_cov_3.815601:416..1543+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1536.t1 ID=Gcaud1536.t1|Name=Gcaud1536.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:416..1543+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGGCGACTGAACTGAACAAGCCTGTGCAGATGGACGAGTCGGT
CAATTCGCCCAAATCCGGCGCCAAGGACGCTCCGCAACAGCTACTCAACA
GATTGCTGCCAGAGGATGTAGTGCCCGGCGTGATAGCAGATGCCGACTTT
GATATGACGTCGTCCGATTATTACTTCAATTCGTACGCCCACTTTGGCAT
TCACGAGGAAATGCTCAAGGATGAGGTGCGAACAAGGAGTTATATGCGCG
CCATTAAGGATAACCCGCATTTGTTTGAGGGCAAGACCGTCATGGACGTT
GGCTGCGGTACAGGTGTGTTGAGTATCTTTGCGGCACAGGCCGGTGCGAA
AAAGGTGTATGCGGTGGAATGTTCAAAGATTGTGGATCAGGCCAAGATGA
TTATCTCGGATAATGGCTTCTCAGACGTCATAGACGTAGTAGAGACCAAG
GTTGAGGACATGGAGCTGGACGAAAAGGTCGACATAATCATCTCCGAATG
GATGGGATACTTTCTGTTCTACGAATCCATGTTAGACACCGTGTTGTTTG
CGCGCGATAAGTGGCTCAAGCCCGGAGGGCTCATGTTCCCGGACAAGGCC
ACATTGTATCTGTGTGCCATTGAAGACGCGCATTACAAAGCGGAGAAAAT
CGACTTTTGGGATAATGTGTACGGGCTCAACATGTCGTGCATAAAGAACG
TAGCGCTCACCGAGCCCATCGTGGACACCGTCGATCCGGAACAGGTGATG
ACCAACGTGTGCGCGGTATTTCCAATCGACACCACCACTGTGCGCAAGGA
GCAGCTGTCGTTTGCCATGCCGTTCAGTCTGATGGCCATTCGTAACGACT
ACGCACACGCGCTGGTGGCGTATTTCGACGTTGAGTTTTCACACTGTTTG
AAGCCGGTGTCGTTTGCCACGGGCCCACATGTGAAACCGACTCATTGGAA
GCAGACGGTGCTGTATCTGGACAGAGCTTTGCCATTCAAACAGGGAGAGG
TGCTCGAGGGGGTTCTGGCTTGTCGTCCGAACAACAAGAACCCGAGGGAT
CTGGATATTGCGGTAGAGTACAGTTTTCAGGGCGGCTTGACCAGCGCCAA
GAACTTACTGCGATATCGGCTGCGGTGA
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Coding sequence (CDS) from alignment at NODE_2780_length_4706_cov_3.815601:416..1543+

>Gcaud1536.t1 ID=Gcaud1536.t1|Name=Gcaud1536.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_2780_length_4706_cov_3.815601:416..1543+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGGCGACTGAACTGAACAAGCCTGTGCAGATGGACGAGTCGGT
CAATTCGCCCAAATCCGGCGCCAAGGACGCTCCGCAACAGCTACTCAACA
GATTGCTGCCAGAGGATGTAGTGCCCGGCGTGATAGCAGATGCCGACTTT
GATATGACGTCGTCCGATTATTACTTCAATTCGTACGCCCACTTTGGCAT
TCACGAGGAAATGCTCAAGGATGAGGTGCGAACAAGGAGTTATATGCGCG
CCATTAAGGATAACCCGCATTTGTTTGAGGGCAAGACCGTCATGGACGTT
GGCTGCGGTACAGGTGTGTTGAGTATCTTTGCGGCACAGGCCGGTGCGAA
AAAGGTGTATGCGGTGGAATGTTCAAAGATTGTGGATCAGGCCAAGATGA
TTATCTCGGATAATGGCTTCTCAGACGTCATAGACGTAGTAGAGACCAAG
GTTGAGGACATGGAGCTGGACGAAAAGGTCGACATAATCATCTCCGAATG
GATGGGATACTTTCTGTTCTACGAATCCATGTTAGACACCGTGTTGTTTG
CGCGCGATAAGTGGCTCAAGCCCGGAGGGCTCATGTTCCCGGACAAGGCC
ACATTGTATCTGTGTGCCATTGAAGACGCGCATTACAAAGCGGAGAAAAT
CGACTTTTGGGATAATGTGTACGGGCTCAACATGTCGTGCATAAAGAACG
TAGCGCTCACCGAGCCCATCGTGGACACCGTCGATCCGGAACAGGTGATG
ACCAACGTGTGCGCGGTATTTCCAATCGACACCACCACTGTGCGCAAGGA
GCAGCTGTCGTTTGCCATGCCGTTCAGTCTGATGGCCATTCGTAACGACT
ACGCACACGCGCTGGTGGCGTATTTCGACGTTGAGTTTTCACACTGTTTG
AAGCCGGTGTCGTTTGCCACGGGCCCACATGTGAAACCGACTCATTGGAA
GCAGACGGTGCTGTATCTGGACAGAGCTTTGCCATTCAAACAGGGAGAGG
TGCTCGAGGGGGTTCTGGCTTGTCGTCCGAACAACAAGAACCCGAGGGAT
CTGGATATTGCGGTAGAGTACAGTTTTCAGGGCGGCTTGACCAGCGCCAA
GAACTTACTGCGATATCGGCTGCGGTGA
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