Gcaud1514.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1514.t1
Unique NameGcaud1514.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1083_length_14050_cov_4.058099contigNODE_1083_length_14050_cov_4.058099:1307..2177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO357CT
Preferred nameDGK1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
Evalue9.39e-26
EggNOG OGsCOG0170@1|root,KOG4453@2759|Eukaryota
EC2.7.1.174
Descriptionphytol kinase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1514Gcaud1514Gracilaria caudata M_176_S67 malegeneNODE_1083_length_14050_cov_4.058099 1307..2177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1Gcaud1514.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1083_length_14050_cov_4.058099 1307..2177 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1.stop1Gcaud1514.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1083_length_14050_cov_4.058099 1307..1309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1.CDS1Gcaud1514.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1083_length_14050_cov_4.058099 1307..1999 -
Gcaud1514.t1.CDS2Gcaud1514.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1083_length_14050_cov_4.058099 2082..2177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1.exon1Gcaud1514.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1083_length_14050_cov_4.058099 1307..1999 -
Gcaud1514.t1.exon2Gcaud1514.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1083_length_14050_cov_4.058099 2082..2177 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1.intron1Gcaud1514.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1083_length_14050_cov_4.058099 2000..2081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1514.t1.start1Gcaud1514.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1083_length_14050_cov_4.058099 2175..2177 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1514.t1 ID=Gcaud1514.t1|Name=Gcaud1514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=263bp
MTRPLVAAGLARRADALSSALPTRKAFHFSRKFFHFLSGFAYAFLTRNLE
SATRRPFMFALVCVVFVVELSRIRRPDGFLNRVVLSSFKSFMRRHEAKQF
SGMLYYTLGVALTASYFSNTAACIGILALSIADPIAALVGFAFEPVLPEA
RLRNGKSFAAFIFAAFAAIFSTFAAFCCAPRSTMDLKEALIVSVPIGISA
AFTELIIPSPQLLLPSRYVPLGLDDNLFIPIVAAAVCDFLLQKRLHDVDL
SPFLFCAPLVTL*
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spliced messenger RNA

>Gcaud1514.t1 ID=Gcaud1514.t1|Name=Gcaud1514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=789bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:1307..2177- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCCCCTTGGTGGCTGCCGGACTCGCTCGGCGCGCCGACGCCCT
TTCCAGCGCCTTGCCCACGCGCAAGGCCTTCCATTTCTCCAGGAAGTTCT
TTCACTTCCTCAGCGGCTTTGCGTACGCCTTTCTCACGCGCAATCTTGAG
TCTGCCACACGGCGCCCGTTCATGTTCGCGCTGGTGTGCGTCGTGTTCGT
AGTAGAGCTATCTCGCATTCGTCGCCCCGATGGTTTCTTGAATCGCGTCG
TGCTATCCTCGTTCAAGTCGTTCATGCGCCGACATGAGGCCAAGCAGTTT
TCAGGCATGCTGTATTACACGCTCGGCGTCGCCCTCACCGCCTCGTACTT
CTCCAACACAGCCGCCTGCATTGGCATCCTAGCGTTGTCTATCGCCGATC
CCATCGCCGCCTTGGTTGGGTTTGCGTTTGAGCCCGTACTGCCTGAGGCA
CGACTTCGCAACGGCAAGTCGTTTGCCGCGTTTATCTTCGCCGCGTTCGC
GGCCATTTTCAGCACGTTTGCGGCGTTTTGCTGCGCGCCGCGTAGCACCA
TGGACTTGAAGGAGGCATTGATTGTGTCGGTTCCCATTGGAATCAGTGCG
GCGTTCACAGAGTTGATCATTCCTTCGCCGCAGTTGTTGTTGCCGTCTCG
GTACGTGCCGCTTGGGCTGGATGATAATTTGTTCATCCCCATTGTGGCTG
CGGCCGTGTGTGACTTCTTGCTACAGAAACGGTTACATGACGTGGATCTG
TCGCCATTTTTGTTCTGCGCGCCGTTAGTGACACTCTGA
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protein sequence of Gcaud1514.t1

>Gcaud1514.t1 ID=Gcaud1514.t1|Name=Gcaud1514.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=263bp
MTRPLVAAGLARRADALSSALPTRKAFHFSRKFFHFLSGFAYAFLTRNLE
SATRRPFMFALVCVVFVVELSRIRRPDGFLNRVVLSSFKSFMRRHEAKQF
SGMLYYTLGVALTASYFSNTAACIGILALSIADPIAALVGFAFEPVLPEA
RLRNGKSFAAFIFAAFAAIFSTFAAFCCAPRSTMDLKEALIVSVPIGISA
AFTELIIPSPQLLLPSRYVPLGLDDNLFIPIVAAAVCDFLLQKRLHDVDL
SPFLFCAPLVTL*
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mRNA from alignment at NODE_1083_length_14050_cov_4.058099:1307..2177-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1514.t1 ID=Gcaud1514.t1|Name=Gcaud1514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=871bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:1307..2177- (Gracilaria caudata M_176_S67 male)
ATGACTCGCCCCTTGGTGGCTGCCGGACTCGCTCGGCGCGCCGACGCCCT
TTCCAGCGCCTTGCCCACGCGCAAGGCCTTCCATTTCTCCAGGAAGGTGC
GTGCCGCATTTCTGTGTGTCTTCCGTTTTCTCGCCCGCTTCGTTGCTGCT
AACTTGCGTCCCGCGCCTCCGACGCCAGTTCTTTCACTTCCTCAGCGGCT
TTGCGTACGCCTTTCTCACGCGCAATCTTGAGTCTGCCACACGGCGCCCG
TTCATGTTCGCGCTGGTGTGCGTCGTGTTCGTAGTAGAGCTATCTCGCAT
TCGTCGCCCCGATGGTTTCTTGAATCGCGTCGTGCTATCCTCGTTCAAGT
CGTTCATGCGCCGACATGAGGCCAAGCAGTTTTCAGGCATGCTGTATTAC
ACGCTCGGCGTCGCCCTCACCGCCTCGTACTTCTCCAACACAGCCGCCTG
CATTGGCATCCTAGCGTTGTCTATCGCCGATCCCATCGCCGCCTTGGTTG
GGTTTGCGTTTGAGCCCGTACTGCCTGAGGCACGACTTCGCAACGGCAAG
TCGTTTGCCGCGTTTATCTTCGCCGCGTTCGCGGCCATTTTCAGCACGTT
TGCGGCGTTTTGCTGCGCGCCGCGTAGCACCATGGACTTGAAGGAGGCAT
TGATTGTGTCGGTTCCCATTGGAATCAGTGCGGCGTTCACAGAGTTGATC
ATTCCTTCGCCGCAGTTGTTGTTGCCGTCTCGGTACGTGCCGCTTGGGCT
GGATGATAATTTGTTCATCCCCATTGTGGCTGCGGCCGTGTGTGACTTCT
TGCTACAGAAACGGTTACATGACGTGGATCTGTCGCCATTTTTGTTCTGC
GCGCCGTTAGTGACACTCTGA
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Coding sequence (CDS) from alignment at NODE_1083_length_14050_cov_4.058099:1307..2177-

>Gcaud1514.t1 ID=Gcaud1514.t1|Name=Gcaud1514.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=789bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:1307..2177- (Gracilaria caudata M_176_S67 male)
ATGACTCGCCCCTTGGTGGCTGCCGGACTCGCTCGGCGCGCCGACGCCCT
TTCCAGCGCCTTGCCCACGCGCAAGGCCTTCCATTTCTCCAGGAAGTTCT
TTCACTTCCTCAGCGGCTTTGCGTACGCCTTTCTCACGCGCAATCTTGAG
TCTGCCACACGGCGCCCGTTCATGTTCGCGCTGGTGTGCGTCGTGTTCGT
AGTAGAGCTATCTCGCATTCGTCGCCCCGATGGTTTCTTGAATCGCGTCG
TGCTATCCTCGTTCAAGTCGTTCATGCGCCGACATGAGGCCAAGCAGTTT
TCAGGCATGCTGTATTACACGCTCGGCGTCGCCCTCACCGCCTCGTACTT
CTCCAACACAGCCGCCTGCATTGGCATCCTAGCGTTGTCTATCGCCGATC
CCATCGCCGCCTTGGTTGGGTTTGCGTTTGAGCCCGTACTGCCTGAGGCA
CGACTTCGCAACGGCAAGTCGTTTGCCGCGTTTATCTTCGCCGCGTTCGC
GGCCATTTTCAGCACGTTTGCGGCGTTTTGCTGCGCGCCGCGTAGCACCA
TGGACTTGAAGGAGGCATTGATTGTGTCGGTTCCCATTGGAATCAGTGCG
GCGTTCACAGAGTTGATCATTCCTTCGCCGCAGTTGTTGTTGCCGTCTCG
GTACGTGCCGCTTGGGCTGGATGATAATTTGTTCATCCCCATTGTGGCTG
CGGCCGTGTGTGACTTCTTGCTACAGAAACGGTTACATGACGTGGATCTG
TCGCCATTTTTGTTCTGCGCGCCGTTAGTGACACTCTGA
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