Gcaud1513.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1513.t1
Unique Name	Gcaud1513.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1083_length_14050_cov_4.058099	contig	NODE_1083_length_14050_cov_4.058099:207..1100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706908.1
PFAMs	Acetyltransf_10
Max annot lvl	2759\|Eukaryota
Evalue	7.59e-69
EggNOG OGs	2D0KU@1\|root,2SEKQ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1513	Gcaud1513	Gracilaria caudata M_176_S67 male	gene	NODE_1083_length_14050_cov_4.058099 207..1100 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1513.t1.start1	Gcaud1513.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1083_length_14050_cov_4.058099 207..209 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1513.t1.CDS1	Gcaud1513.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1083_length_14050_cov_4.058099 207..1100 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1513.t1.exon1	Gcaud1513.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1083_length_14050_cov_4.058099 207..1100 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1513.t1.stop1	Gcaud1513.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1083_length_14050_cov_4.058099 1098..1100 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1513.t1	Gcaud1513.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1083_length_14050_cov_4.058099 207..1100 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+
coding sequence from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+

mRNA sequence

>Gcaud1513.t1 ID=Gcaud1513.t1|Name=Gcaud1513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=298bp
LIRRARNPNELHLLYAVWNRVAGEEGLSPLAPDEVDAESSTVHLLARAPD
RSVSGAARLLRVGQNARLDRVAVVPEWRGKGVGRALVERLLVLAAPVEGA
IYVNATRGEMGFFSILGFETLGNDFVDGVVQLRTMVYRTPVCAPAVGCVG
LHHTSVRVSDIERSLAFYGSLGFFVTDKFVTNGGQRACYVEGLGTRLEFV
EAKNGSGGLTGVQGVPHTGFDRLVFDVTKACTDLETFLQHLQRRNGGVID
IAAQPAKQVAGAHVVSVASVFDPDALPIDFIRREAMVPSELRTRVNW*

spliced messenger RNA

>Gcaud1513.t1 ID=Gcaud1513.t1|Name=Gcaud1513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGATACGTCGTGCCAGAAACCCGAATGAGCTGCATCTGTTGTATGCGGT
GTGGAACCGCGTGGCGGGTGAGGAGGGTTTGTCACCGTTGGCACCGGATG
AGGTGGATGCGGAGTCGTCCACGGTGCATTTGCTGGCGAGAGCGCCGGAC
CGTAGCGTGAGTGGCGCGGCGAGGTTGTTGAGGGTGGGACAGAATGCCAG
ACTGGATCGCGTGGCAGTGGTGCCGGAGTGGAGGGGGAAAGGCGTGGGAA
GGGCGTTGGTGGAGAGGCTTTTGGTGCTGGCCGCGCCTGTGGAGGGTGCT
ATTTATGTCAATGCTACTAGGGGGGAGATGGGATTCTTTTCTATCTTGGG
ATTTGAGACGCTTGGTAATGATTTTGTTGACGGTGTTGTGCAGCTGAGAA
CTATGGTGTATCGCACTCCGGTTTGCGCGCCAGCTGTGGGTTGTGTTGGC
TTACATCATACCTCGGTGCGGGTGTCTGATATAGAGAGAAGTCTTGCCTT
TTATGGATCGCTGGGCTTTTTTGTGACCGACAAGTTCGTTACCAACGGTG
GACAACGCGCGTGTTACGTAGAGGGGTTGGGCACTCGTTTGGAGTTTGTG
GAGGCCAAGAATGGCAGTGGCGGCCTAACGGGCGTTCAGGGAGTTCCTCA
TACAGGCTTTGATAGACTTGTGTTTGATGTCACAAAGGCTTGCACCGACC
TTGAAACGTTTTTGCAGCACTTGCAGCGACGGAACGGGGGCGTGATTGAT
ATTGCCGCACAGCCTGCCAAACAGGTTGCGGGCGCTCATGTTGTGAGTGT
GGCGAGCGTTTTTGATCCGGATGCTCTGCCAATCGACTTTATTCGCAGGG
AGGCTATGGTTCCGAGTGAACTGCGCACCAGGGTTAATTGGTGA

protein sequence of Gcaud1513.t1

>Gcaud1513.t1 ID=Gcaud1513.t1|Name=Gcaud1513.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
LIRRARNPNELHLLYAVWNRVAGEEGLSPLAPDEVDAESSTVHLLARAPD
RSVSGAARLLRVGQNARLDRVAVVPEWRGKGVGRALVERLLVLAAPVEGA
IYVNATRGEMGFFSILGFETLGNDFVDGVVQLRTMVYRTPVCAPAVGCVG
LHHTSVRVSDIERSLAFYGSLGFFVTDKFVTNGGQRACYVEGLGTRLEFV
EAKNGSGGLTGVQGVPHTGFDRLVFDVTKACTDLETFLQHLQRRNGGVID
IAAQPAKQVAGAHVVSVASVFDPDALPIDFIRREAMVPSELRTRVNW*

mRNA from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1513.t1 ID=Gcaud1513.t1|Name=Gcaud1513.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=894bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+ (Gracilaria caudata M_176_S67 male)
TTGATACGTCGTGCCAGAAACCCGAATGAGCTGCATCTGTTGTATGCGGT
GTGGAACCGCGTGGCGGGTGAGGAGGGTTTGTCACCGTTGGCACCGGATG
AGGTGGATGCGGAGTCGTCCACGGTGCATTTGCTGGCGAGAGCGCCGGAC
CGTAGCGTGAGTGGCGCGGCGAGGTTGTTGAGGGTGGGACAGAATGCCAG
ACTGGATCGCGTGGCAGTGGTGCCGGAGTGGAGGGGGAAAGGCGTGGGAA
GGGCGTTGGTGGAGAGGCTTTTGGTGCTGGCCGCGCCTGTGGAGGGTGCT
ATTTATGTCAATGCTACTAGGGGGGAGATGGGATTCTTTTCTATCTTGGG
ATTTGAGACGCTTGGTAATGATTTTGTTGACGGTGTTGTGCAGCTGAGAA
CTATGGTGTATCGCACTCCGGTTTGCGCGCCAGCTGTGGGTTGTGTTGGC
TTACATCATACCTCGGTGCGGGTGTCTGATATAGAGAGAAGTCTTGCCTT
TTATGGATCGCTGGGCTTTTTTGTGACCGACAAGTTCGTTACCAACGGTG
GACAACGCGCGTGTTACGTAGAGGGGTTGGGCACTCGTTTGGAGTTTGTG
GAGGCCAAGAATGGCAGTGGCGGCCTAACGGGCGTTCAGGGAGTTCCTCA
TACAGGCTTTGATAGACTTGTGTTTGATGTCACAAAGGCTTGCACCGACC
TTGAAACGTTTTTGCAGCACTTGCAGCGACGGAACGGGGGCGTGATTGAT
ATTGCCGCACAGCCTGCCAAACAGGTTGCGGGCGCTCATGTTGTGAGTGT
GGCGAGCGTTTTTGATCCGGATGCTCTGCCAATCGACTTTATTCGCAGGG
AGGCTATGGTTCCGAGTGAACTGCGCACCAGGGTTAATTGGTGA

Coding sequence (CDS) from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+

>Gcaud1513.t1 ID=Gcaud1513.t1|Name=Gcaud1513.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=894bp|location=Sequence derived from alignment at NODE_1083_length_14050_cov_4.058099:207..1100+ (Gracilaria caudata M_176_S67 male)
TTGATACGTCGTGCCAGAAACCCGAATGAGCTGCATCTGTTGTATGCGGT
GTGGAACCGCGTGGCGGGTGAGGAGGGTTTGTCACCGTTGGCACCGGATG
AGGTGGATGCGGAGTCGTCCACGGTGCATTTGCTGGCGAGAGCGCCGGAC
CGTAGCGTGAGTGGCGCGGCGAGGTTGTTGAGGGTGGGACAGAATGCCAG
ACTGGATCGCGTGGCAGTGGTGCCGGAGTGGAGGGGGAAAGGCGTGGGAA
GGGCGTTGGTGGAGAGGCTTTTGGTGCTGGCCGCGCCTGTGGAGGGTGCT
ATTTATGTCAATGCTACTAGGGGGGAGATGGGATTCTTTTCTATCTTGGG
ATTTGAGACGCTTGGTAATGATTTTGTTGACGGTGTTGTGCAGCTGAGAA
CTATGGTGTATCGCACTCCGGTTTGCGCGCCAGCTGTGGGTTGTGTTGGC
TTACATCATACCTCGGTGCGGGTGTCTGATATAGAGAGAAGTCTTGCCTT
TTATGGATCGCTGGGCTTTTTTGTGACCGACAAGTTCGTTACCAACGGTG
GACAACGCGCGTGTTACGTAGAGGGGTTGGGCACTCGTTTGGAGTTTGTG
GAGGCCAAGAATGGCAGTGGCGGCCTAACGGGCGTTCAGGGAGTTCCTCA
TACAGGCTTTGATAGACTTGTGTTTGATGTCACAAAGGCTTGCACCGACC
TTGAAACGTTTTTGCAGCACTTGCAGCGACGGAACGGGGGCGTGATTGAT
ATTGCCGCACAGCCTGCCAAACAGGTTGCGGGCGCTCATGTTGTGAGTGT
GGCGAGCGTTTTTGATCCGGATGCTCTGCCAATCGACTTTATTCGCAGGG
AGGCTATGGTTCCGAGTGAACTGCGCACCAGGGTTAATTGGTGA