Gcaud1510.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1510.t1
Unique NameGcaud1510.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_629_length_20630_cov_4.592434contigNODE_629_length_20630_cov_4.592434:19179..20235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr44926
Max annot lvl2836|Bacillariophyta
Evalue2.33e-05
EggNOG OGs2E95U@1|root,2SFJE@2759|Eukaryota,2XBB6@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1510Gcaud1510Gracilaria caudata M_176_S67 malegeneNODE_629_length_20630_cov_4.592434 19179..20235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1Gcaud1510.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_629_length_20630_cov_4.592434 19179..20235 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1.start1Gcaud1510.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_629_length_20630_cov_4.592434 19179..19181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1.CDS1Gcaud1510.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_629_length_20630_cov_4.592434 19179..19295 +
Gcaud1510.t1.CDS2Gcaud1510.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_629_length_20630_cov_4.592434 19365..19407 +
Gcaud1510.t1.CDS3Gcaud1510.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_629_length_20630_cov_4.592434 19520..20235 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1.exon1Gcaud1510.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_629_length_20630_cov_4.592434 19179..19295 +
Gcaud1510.t1.exon2Gcaud1510.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_629_length_20630_cov_4.592434 19365..19407 +
Gcaud1510.t1.exon3Gcaud1510.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_629_length_20630_cov_4.592434 19520..20235 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1.intron1Gcaud1510.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_629_length_20630_cov_4.592434 19296..19364 +
Gcaud1510.t1.intron2Gcaud1510.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_629_length_20630_cov_4.592434 19408..19519 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1510.t1.stop1Gcaud1510.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_629_length_20630_cov_4.592434 20233..20235 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1510.t1 ID=Gcaud1510.t1|Name=Gcaud1510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=292bp
MKGQIGRDWQAVAADDVGESLKRESGHHLSGNEERFMKYAFSRHQSSNPP
GLSEYLANVAEEIPNPLSYVNLRKEGRIDLVSRIIDAGGYIEVSKRLGVP
VDETQFVPPPSVATDELFKPFPKPEDQGASIAIGRSLEERMKSVDKPVKR
NEFSKPMTKREKSRIEAVPTAAELIEQNERILPRVTDEPSIDGENLSLTI
PMRLGLLTLTTIAAIGFGKASSGVISPNIIATSKAIASGLTFAHSLLAIY
CALLIAPRMHRGSSLWFIKVLLGGPLAVVELRTLDNLEAPR*
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spliced messenger RNA

>Gcaud1510.t1 ID=Gcaud1510.t1|Name=Gcaud1510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=876bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:19179..20235+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCCAGATCGGACGAGATTGGCAAGCTGTTGCAGCAGACGATGT
CGGTGAGAGCCTCAAGCGGGAGTCAGGTCATCACTTGAGCGGAAACGAGG
AACGTTTTATGAAGTATGCATTCTCACGACACCAGTCCTCCAACCCTCCG
GGTCTCAGCGAGTATCTTGCCAATGTTGCGGAGGAGATACCCAATCCTCT
GTCGTATGTCAACTTGAGGAAAGAAGGAAGGATTGACCTAGTTTCACGCA
TCATCGATGCTGGAGGTTATATAGAAGTTTCGAAGCGACTAGGAGTTCCA
GTAGACGAAACGCAGTTTGTACCACCACCTAGTGTGGCCACAGATGAACT
ATTTAAGCCATTCCCTAAGCCCGAAGATCAAGGGGCGTCGATTGCAATCG
GAAGAAGCTTAGAAGAGAGGATGAAATCTGTCGACAAACCTGTAAAACGG
AACGAGTTTTCAAAACCAATGACGAAGAGAGAGAAGTCAAGAATCGAAGC
AGTGCCTACTGCAGCAGAGCTCATCGAGCAAAACGAACGAATTCTACCTC
GTGTAACTGATGAACCTTCGATTGACGGAGAGAATTTGTCGCTGACAATA
CCCATGAGACTGGGTCTTTTAACTCTGACGACAATAGCTGCCATTGGTTT
TGGAAAGGCAAGCAGCGGTGTGATTAGTCCAAATATTATCGCCACTTCTA
AAGCCATAGCTAGTGGTCTTACTTTTGCTCACTCTCTACTGGCAATCTAC
TGCGCTCTTCTGATCGCACCACGAATGCATCGTGGCTCCTCTCTCTGGTT
CATCAAGGTTCTTCTGGGAGGCCCACTTGCAGTGGTTGAACTGAGGACTC
TAGACAATTTGGAAGCCCCCAGATAG
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protein sequence of Gcaud1510.t1

>Gcaud1510.t1 ID=Gcaud1510.t1|Name=Gcaud1510.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=292bp
MKGQIGRDWQAVAADDVGESLKRESGHHLSGNEERFMKYAFSRHQSSNPP
GLSEYLANVAEEIPNPLSYVNLRKEGRIDLVSRIIDAGGYIEVSKRLGVP
VDETQFVPPPSVATDELFKPFPKPEDQGASIAIGRSLEERMKSVDKPVKR
NEFSKPMTKREKSRIEAVPTAAELIEQNERILPRVTDEPSIDGENLSLTI
PMRLGLLTLTTIAAIGFGKASSGVISPNIIATSKAIASGLTFAHSLLAIY
CALLIAPRMHRGSSLWFIKVLLGGPLAVVELRTLDNLEAPR*
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mRNA from alignment at NODE_629_length_20630_cov_4.592434:19179..20235+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1510.t1 ID=Gcaud1510.t1|Name=Gcaud1510.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1057bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:19179..20235+ (Gracilaria caudata M_176_S67 male)
ATGAAAGGCCAGATCGGACGAGATTGGCAAGCTGTTGCAGCAGACGATGT
CGGTGAGAGCCTCAAGCGGGAGTCAGGTCATCACTTGAGCGGAAACGAGG
AACGTTTTATGAAGTATGTGCAACCACGGATGTTCTTTTGTTAACTATCT
GGCGATAAACATGGCCAAGCGTTGCTTTTGTGGAAGGCATTCTCACGACA
CCAGTCCTCCAACCCTCCGGGTCTCAGCGGTAAGAGATATGCACAGTAAT
GTTTTTGGGTTGAATCCTCGATACGACGTGTCGATGAAGACCGGAAAAGA
AGGCAGCGAGACGTTTCAGGTTCTAAAAGCAGATATCCAAGAGTATCTTG
CCAATGTTGCGGAGGAGATACCCAATCCTCTGTCGTATGTCAACTTGAGG
AAAGAAGGAAGGATTGACCTAGTTTCACGCATCATCGATGCTGGAGGTTA
TATAGAAGTTTCGAAGCGACTAGGAGTTCCAGTAGACGAAACGCAGTTTG
TACCACCACCTAGTGTGGCCACAGATGAACTATTTAAGCCATTCCCTAAG
CCCGAAGATCAAGGGGCGTCGATTGCAATCGGAAGAAGCTTAGAAGAGAG
GATGAAATCTGTCGACAAACCTGTAAAACGGAACGAGTTTTCAAAACCAA
TGACGAAGAGAGAGAAGTCAAGAATCGAAGCAGTGCCTACTGCAGCAGAG
CTCATCGAGCAAAACGAACGAATTCTACCTCGTGTAACTGATGAACCTTC
GATTGACGGAGAGAATTTGTCGCTGACAATACCCATGAGACTGGGTCTTT
TAACTCTGACGACAATAGCTGCCATTGGTTTTGGAAAGGCAAGCAGCGGT
GTGATTAGTCCAAATATTATCGCCACTTCTAAAGCCATAGCTAGTGGTCT
TACTTTTGCTCACTCTCTACTGGCAATCTACTGCGCTCTTCTGATCGCAC
CACGAATGCATCGTGGCTCCTCTCTCTGGTTCATCAAGGTTCTTCTGGGA
GGCCCACTTGCAGTGGTTGAACTGAGGACTCTAGACAATTTGGAAGCCCC
CAGATAG
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Coding sequence (CDS) from alignment at NODE_629_length_20630_cov_4.592434:19179..20235+

>Gcaud1510.t1 ID=Gcaud1510.t1|Name=Gcaud1510.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=876bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:19179..20235+ (Gracilaria caudata M_176_S67 male)
ATGAAAGGCCAGATCGGACGAGATTGGCAAGCTGTTGCAGCAGACGATGT
CGGTGAGAGCCTCAAGCGGGAGTCAGGTCATCACTTGAGCGGAAACGAGG
AACGTTTTATGAAGTATGCATTCTCACGACACCAGTCCTCCAACCCTCCG
GGTCTCAGCGAGTATCTTGCCAATGTTGCGGAGGAGATACCCAATCCTCT
GTCGTATGTCAACTTGAGGAAAGAAGGAAGGATTGACCTAGTTTCACGCA
TCATCGATGCTGGAGGTTATATAGAAGTTTCGAAGCGACTAGGAGTTCCA
GTAGACGAAACGCAGTTTGTACCACCACCTAGTGTGGCCACAGATGAACT
ATTTAAGCCATTCCCTAAGCCCGAAGATCAAGGGGCGTCGATTGCAATCG
GAAGAAGCTTAGAAGAGAGGATGAAATCTGTCGACAAACCTGTAAAACGG
AACGAGTTTTCAAAACCAATGACGAAGAGAGAGAAGTCAAGAATCGAAGC
AGTGCCTACTGCAGCAGAGCTCATCGAGCAAAACGAACGAATTCTACCTC
GTGTAACTGATGAACCTTCGATTGACGGAGAGAATTTGTCGCTGACAATA
CCCATGAGACTGGGTCTTTTAACTCTGACGACAATAGCTGCCATTGGTTT
TGGAAAGGCAAGCAGCGGTGTGATTAGTCCAAATATTATCGCCACTTCTA
AAGCCATAGCTAGTGGTCTTACTTTTGCTCACTCTCTACTGGCAATCTAC
TGCGCTCTTCTGATCGCACCACGAATGCATCGTGGCTCCTCTCTCTGGTT
CATCAAGGTTCTTCTGGGAGGCCCACTTGCAGTGGTTGAACTGAGGACTC
TAGACAATTTGGAAGCCCCCAGATAG
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