Gcaud1505.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1505.t1
Unique Name	Gcaud1505.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_629_length_20630_cov_4.592434	contig	NODE_629_length_20630_cov_4.592434:6964..8366 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1505	Gcaud1505	Gracilaria caudata M_176_S67 male	gene	NODE_629_length_20630_cov_4.592434 6964..8366 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1	Gcaud1505.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_629_length_20630_cov_4.592434 6964..8366 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1.stop1	Gcaud1505.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_629_length_20630_cov_4.592434 6964..6966 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1.CDS1	Gcaud1505.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_629_length_20630_cov_4.592434 6964..7705 -
Gcaud1505.t1.CDS2	Gcaud1505.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_629_length_20630_cov_4.592434 7791..8205 -
Gcaud1505.t1.CDS3	Gcaud1505.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_629_length_20630_cov_4.592434 8270..8366 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1.exon1	Gcaud1505.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_629_length_20630_cov_4.592434 6964..7705 -
Gcaud1505.t1.exon2	Gcaud1505.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_629_length_20630_cov_4.592434 7791..8205 -
Gcaud1505.t1.exon3	Gcaud1505.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_629_length_20630_cov_4.592434 8270..8366 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1.intron1	Gcaud1505.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_629_length_20630_cov_4.592434 7706..7790 -
Gcaud1505.t1.intron2	Gcaud1505.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_629_length_20630_cov_4.592434 8206..8269 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1505.t1.start1	Gcaud1505.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_629_length_20630_cov_4.592434 8364..8366 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_629_length_20630_cov_4.592434:6964..8366-
coding sequence from alignment at NODE_629_length_20630_cov_4.592434:6964..8366-

mRNA sequence

>Gcaud1505.t1 ID=Gcaud1505.t1|Name=Gcaud1505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MTSSPDNQEKQFLKYVKEGPIRTDQHRFEEILTIPKELEQQLQLWDDEIE
ICDQAICVGKALDATIHTHEEFLAQFSRITALRDRFYHAPNNCMIVEVYY
CERALDGLLSSIVKVRKHIKALYEELKTLCEACMNVRNSAQKTYRIFDDY
IRKRAMNDPTLRDCVEKAKLKAAVLRELGNRISSVAHGGNSIFKYLHSSW
ICHDLGQTAEQDVTRNPEEAPPTERVQEISRAKTTCSRGKQTSSQPESRK
RAPAGDKACQSTPNEVPETPERDCIETFAKTQRSSPKKKPLLSHSQKRRR
ESEKEKRVVVAKTLRLSTPSRNMGSQPARSSIQALVTNPVTQEEEKEIIN
HEDLIHPSAHSRDLLPARRGQLCPTSSEHPYDSVKNDRGGEGDNLRASEN
DLSMNERPKEKPVSMSV*

spliced messenger RNA

>Gcaud1505.t1 ID=Gcaud1505.t1|Name=Gcaud1505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:6964..8366- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGCAGTCCAGATAATCAAGAGAAGCAGTTTCTGAAGTACGTCAA
AGAAGGCCCAATAAGGACAGATCAGCATCGCTTCGAGGAAATCTTAACAA
TACCAAAGGAATTAGAACAACAACTTCAGTTATGGGATGATGAAATCGAA
ATATGCGATCAAGCTATATGCGTCGGTAAAGCTCTGGACGCTACCATTCA
CACCCATGAAGAATTTCTGGCTCAGTTTAGCCGCATAACGGCCTTGAGGG
ACCGCTTCTATCATGCTCCCAACAATTGCATGATCGTAGAGGTCTATTAT
TGTGAAAGAGCTCTTGACGGATTACTATCGTCCATAGTTAAAGTTCGAAA
GCATATAAAAGCGTTGTACGAAGAGCTCAAAACTCTTTGCGAAGCTTGCA
TGAATGTACGGAATAGCGCTCAGAAAACATACCGAATCTTTGATGATTAT
ATTCGAAAAAGAGCTATGAATGATCCAACCCTCCGAGACTGTGTGGAAAA
GGCCAAGCTGAAAGCTGCTGTTCTTAGAGAGCTTGGAAATCGCATATCCT
CTGTTGCTCATGGTGGAAATTCAATATTCAAATACCTTCACAGTTCGTGG
ATATGTCACGATCTGGGACAAACAGCTGAACAAGACGTAACTCGAAATCC
CGAAGAAGCTCCGCCAACGGAACGTGTGCAGGAGATTTCGAGGGCAAAAA
CTACCTGTTCAAGGGGTAAACAAACAAGTTCGCAACCCGAATCACGAAAA
CGCGCGCCAGCTGGAGACAAAGCATGCCAGAGCACTCCTAACGAGGTACC
TGAAACCCCGGAACGAGATTGCATTGAGACATTCGCAAAGACCCAGAGGT
CATCACCGAAGAAGAAACCGTTGCTTTCCCATTCACAGAAAAGACGTCGA
GAAAGCGAAAAGGAAAAGCGTGTTGTCGTTGCAAAGACACTTCGGTTGAG
TACGCCTAGCCGAAACATGGGTTCCCAACCTGCGAGGTCCAGCATACAAG
CGCTTGTAACAAATCCAGTCACACAAGAAGAGGAGAAAGAAATCATAAAT
CACGAAGACTTGATTCATCCTTCTGCGCATTCTCGGGATCTGTTGCCCGC
CCGCAGAGGACAACTGTGTCCTACTAGTTCAGAGCATCCTTATGACTCTG
TCAAGAACGACAGAGGTGGAGAAGGCGACAATCTTCGCGCGTCGGAAAAT
GACCTTTCGATGAATGAAAGACCTAAAGAGAAACCTGTGAGTATGTCAGT
TTAG

protein sequence of Gcaud1505.t1

>Gcaud1505.t1 ID=Gcaud1505.t1|Name=Gcaud1505.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MTSSPDNQEKQFLKYVKEGPIRTDQHRFEEILTIPKELEQQLQLWDDEIE
ICDQAICVGKALDATIHTHEEFLAQFSRITALRDRFYHAPNNCMIVEVYY
CERALDGLLSSIVKVRKHIKALYEELKTLCEACMNVRNSAQKTYRIFDDY
IRKRAMNDPTLRDCVEKAKLKAAVLRELGNRISSVAHGGNSIFKYLHSSW
ICHDLGQTAEQDVTRNPEEAPPTERVQEISRAKTTCSRGKQTSSQPESRK
RAPAGDKACQSTPNEVPETPERDCIETFAKTQRSSPKKKPLLSHSQKRRR
ESEKEKRVVVAKTLRLSTPSRNMGSQPARSSIQALVTNPVTQEEEKEIIN
HEDLIHPSAHSRDLLPARRGQLCPTSSEHPYDSVKNDRGGEGDNLRASEN
DLSMNERPKEKPVSMSV*

mRNA from alignment at NODE_629_length_20630_cov_4.592434:6964..8366-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1505.t1 ID=Gcaud1505.t1|Name=Gcaud1505.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1403bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:6964..8366- (Gracilaria caudata M_176_S67 male)
ATGACTAGCAGTCCAGATAATCAAGAGAAGCAGTTTCTGAAGTACGTCAA
AGAAGGCCCAATAAGGACAGATCAGCATCGCTTCGAGGAAATCTTAAGTA
CGTTCAGAGAACTACGGCCGTAAGGACATCTAACGCTAACTTGTCTTTGT
TTGGCTCTCAGCAATACCAAAGGAATTAGAACAACAACTTCAGTTATGGG
ATGATGAAATCGAAATATGCGATCAAGCTATATGCGTCGGTAAAGCTCTG
GACGCTACCATTCACACCCATGAAGAATTTCTGGCTCAGTTTAGCCGCAT
AACGGCCTTGAGGGACCGCTTCTATCATGCTCCCAACAATTGCATGATCG
TAGAGGTCTATTATTGTGAAAGAGCTCTTGACGGATTACTATCGTCCATA
GTTAAAGTTCGAAAGCATATAAAAGCGTTGTACGAAGAGCTCAAAACTCT
TTGCGAAGCTTGCATGAATGTACGGAATAGCGCTCAGAAAACATACCGAA
TCTTTGATGATTATATTCGAAAAAGAGCTATGAATGATCCAACCCTCCGA
GACTGTGTGGAAAAGGCCAAGCTGAAGTAAGTAAATGCCTTGTACGGTCT
TCATTCAGTATCTTGGTGCACAACGTATATGAGACTGACGAAAAAAGTGA
CTATGACTCAGAGCTGCTGTTCTTAGAGAGCTTGGAAATCGCATATCCTC
TGTTGCTCATGGTGGAAATTCAATATTCAAATACCTTCACAGTTCGTGGA
TATGTCACGATCTGGGACAAACAGCTGAACAAGACGTAACTCGAAATCCC
GAAGAAGCTCCGCCAACGGAACGTGTGCAGGAGATTTCGAGGGCAAAAAC
TACCTGTTCAAGGGGTAAACAAACAAGTTCGCAACCCGAATCACGAAAAC
GCGCGCCAGCTGGAGACAAAGCATGCCAGAGCACTCCTAACGAGGTACCT
GAAACCCCGGAACGAGATTGCATTGAGACATTCGCAAAGACCCAGAGGTC
ATCACCGAAGAAGAAACCGTTGCTTTCCCATTCACAGAAAAGACGTCGAG
AAAGCGAAAAGGAAAAGCGTGTTGTCGTTGCAAAGACACTTCGGTTGAGT
ACGCCTAGCCGAAACATGGGTTCCCAACCTGCGAGGTCCAGCATACAAGC
GCTTGTAACAAATCCAGTCACACAAGAAGAGGAGAAAGAAATCATAAATC
ACGAAGACTTGATTCATCCTTCTGCGCATTCTCGGGATCTGTTGCCCGCC
CGCAGAGGACAACTGTGTCCTACTAGTTCAGAGCATCCTTATGACTCTGT
CAAGAACGACAGAGGTGGAGAAGGCGACAATCTTCGCGCGTCGGAAAATG
ACCTTTCGATGAATGAAAGACCTAAAGAGAAACCTGTGAGTATGTCAGTT
TAG

Coding sequence (CDS) from alignment at NODE_629_length_20630_cov_4.592434:6964..8366-

>Gcaud1505.t1 ID=Gcaud1505.t1|Name=Gcaud1505.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_629_length_20630_cov_4.592434:6964..8366- (Gracilaria caudata M_176_S67 male)
ATGACTAGCAGTCCAGATAATCAAGAGAAGCAGTTTCTGAAGTACGTCAA
AGAAGGCCCAATAAGGACAGATCAGCATCGCTTCGAGGAAATCTTAACAA
TACCAAAGGAATTAGAACAACAACTTCAGTTATGGGATGATGAAATCGAA
ATATGCGATCAAGCTATATGCGTCGGTAAAGCTCTGGACGCTACCATTCA
CACCCATGAAGAATTTCTGGCTCAGTTTAGCCGCATAACGGCCTTGAGGG
ACCGCTTCTATCATGCTCCCAACAATTGCATGATCGTAGAGGTCTATTAT
TGTGAAAGAGCTCTTGACGGATTACTATCGTCCATAGTTAAAGTTCGAAA
GCATATAAAAGCGTTGTACGAAGAGCTCAAAACTCTTTGCGAAGCTTGCA
TGAATGTACGGAATAGCGCTCAGAAAACATACCGAATCTTTGATGATTAT
ATTCGAAAAAGAGCTATGAATGATCCAACCCTCCGAGACTGTGTGGAAAA
GGCCAAGCTGAAAGCTGCTGTTCTTAGAGAGCTTGGAAATCGCATATCCT
CTGTTGCTCATGGTGGAAATTCAATATTCAAATACCTTCACAGTTCGTGG
ATATGTCACGATCTGGGACAAACAGCTGAACAAGACGTAACTCGAAATCC
CGAAGAAGCTCCGCCAACGGAACGTGTGCAGGAGATTTCGAGGGCAAAAA
CTACCTGTTCAAGGGGTAAACAAACAAGTTCGCAACCCGAATCACGAAAA
CGCGCGCCAGCTGGAGACAAAGCATGCCAGAGCACTCCTAACGAGGTACC
TGAAACCCCGGAACGAGATTGCATTGAGACATTCGCAAAGACCCAGAGGT
CATCACCGAAGAAGAAACCGTTGCTTTCCCATTCACAGAAAAGACGTCGA
GAAAGCGAAAAGGAAAAGCGTGTTGTCGTTGCAAAGACACTTCGGTTGAG
TACGCCTAGCCGAAACATGGGTTCCCAACCTGCGAGGTCCAGCATACAAG
CGCTTGTAACAAATCCAGTCACACAAGAAGAGGAGAAAGAAATCATAAAT
CACGAAGACTTGATTCATCCTTCTGCGCATTCTCGGGATCTGTTGCCCGC
CCGCAGAGGACAACTGTGTCCTACTAGTTCAGAGCATCCTTATGACTCTG
TCAAGAACGACAGAGGTGGAGAAGGCGACAATCTTCGCGCGTCGGAAAAT
GACCTTTCGATGAATGAAAGACCTAAAGAGAAACCTGTGAGTATGTCAGT
TTAG