Gcaud1499.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1499.t1
Unique NameGcaud1499.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10523_length_541_cov_25.495556contigNODE_10523_length_541_cov_25.495556:2..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1499Gcaud1499Gracilaria caudata M_176_S67 malegeneNODE_10523_length_541_cov_25.495556 2..512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1499.t1.CDS1Gcaud1499.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10523_length_541_cov_25.495556 2..512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1499.t1.exon1Gcaud1499.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10523_length_541_cov_25.495556 2..512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1499.t1.start1Gcaud1499.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_10523_length_541_cov_25.495556 510..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1499.t1Gcaud1499.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10523_length_541_cov_25.495556 2..512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1499.t1 ID=Gcaud1499.t1|Name=Gcaud1499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
MATSNYGVVSVIQPPLLKTVDQPSLIKFETEYAAYRTKVDDVNKDRDAAS
KLSLASIKDCMDAPTLHALCLMGEIEGATTVEEATDDMVKSWFDKASLST
PKDLSERIDSTLRSVSFKPNKEDPAGGVANFIIDVITALDQNNASEVLKD
VDMAKKFIDRLVNKFKPDVLX
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spliced messenger RNA

>Gcaud1499.t1 ID=Gcaud1499.t1|Name=Gcaud1499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp|location=Sequence derived from alignment at NODE_10523_length_541_cov_25.495556:2..512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCTCAAACTACGGAGTAGTTTCTGTCATTCAACCGCCACTTCT
CAAGACAGTTGACCAGCCTTCTTTGATCAAATTTGAAACTGAGTATGCGG
CGTACCGCACGAAAGTGGACGACGTGAACAAGGATCGCGATGCTGCTTCT
AAACTTTCTCTTGCCTCTATCAAGGACTGCATGGACGCACCTACACTTCA
CGCTCTCTGTCTTATGGGAGAAATTGAAGGGGCGACTACAGTGGAAGAGG
CCACCGATGACATGGTGAAGTCTTGGTTTGACAAAGCATCTCTTTCAACC
CCGAAGGACCTTTCCGAGCGCATCGACTCTACGCTACGTTCCGTTTCCTT
TAAACCGAACAAGGAGGATCCTGCTGGGGGCGTGGCCAATTTTATTATTG
ATGTTATCACGGCCTTGGATCAGAACAATGCATCGGAGGTTCTGAAAGAC
GTTGACATGGCAAAGAAGTTTATCGACCGCCTCGTTAACAAGTTCAAACC
TGATGTGCTTC
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protein sequence of Gcaud1499.t1

>Gcaud1499.t1 ID=Gcaud1499.t1|Name=Gcaud1499.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
MATSNYGVVSVIQPPLLKTVDQPSLIKFETEYAAYRTKVDDVNKDRDAAS
KLSLASIKDCMDAPTLHALCLMGEIEGATTVEEATDDMVKSWFDKASLST
PKDLSERIDSTLRSVSFKPNKEDPAGGVANFIIDVITALDQNNASEVLKD
VDMAKKFIDRLVNKFKPDVLX
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mRNA from alignment at NODE_10523_length_541_cov_25.495556:2..512-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1499.t1 ID=Gcaud1499.t1|Name=Gcaud1499.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp|location=Sequence derived from alignment at NODE_10523_length_541_cov_25.495556:2..512- (Gracilaria caudata M_176_S67 male)
ATGGCTACCTCAAACTACGGAGTAGTTTCTGTCATTCAACCGCCACTTCT
CAAGACAGTTGACCAGCCTTCTTTGATCAAATTTGAAACTGAGTATGCGG
CGTACCGCACGAAAGTGGACGACGTGAACAAGGATCGCGATGCTGCTTCT
AAACTTTCTCTTGCCTCTATCAAGGACTGCATGGACGCACCTACACTTCA
CGCTCTCTGTCTTATGGGAGAAATTGAAGGGGCGACTACAGTGGAAGAGG
CCACCGATGACATGGTGAAGTCTTGGTTTGACAAAGCATCTCTTTCAACC
CCGAAGGACCTTTCCGAGCGCATCGACTCTACGCTACGTTCCGTTTCCTT
TAAACCGAACAAGGAGGATCCTGCTGGGGGCGTGGCCAATTTTATTATTG
ATGTTATCACGGCCTTGGATCAGAACAATGCATCGGAGGTTCTGAAAGAC
GTTGACATGGCAAAGAAGTTTATCGACCGCCTCGTTAACAAGTTCAAACC
TGATGTGCTTC
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Coding sequence (CDS) from alignment at NODE_10523_length_541_cov_25.495556:2..512-

>Gcaud1499.t1 ID=Gcaud1499.t1|Name=Gcaud1499.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=511bp|location=Sequence derived from alignment at NODE_10523_length_541_cov_25.495556:2..512- (Gracilaria caudata M_176_S67 male)
ATGGCTACCTCAAACTACGGAGTAGTTTCTGTCATTCAACCGCCACTTCT
CAAGACAGTTGACCAGCCTTCTTTGATCAAATTTGAAACTGAGTATGCGG
CGTACCGCACGAAAGTGGACGACGTGAACAAGGATCGCGATGCTGCTTCT
AAACTTTCTCTTGCCTCTATCAAGGACTGCATGGACGCACCTACACTTCA
CGCTCTCTGTCTTATGGGAGAAATTGAAGGGGCGACTACAGTGGAAGAGG
CCACCGATGACATGGTGAAGTCTTGGTTTGACAAAGCATCTCTTTCAACC
CCGAAGGACCTTTCCGAGCGCATCGACTCTACGCTACGTTCCGTTTCCTT
TAAACCGAACAAGGAGGATCCTGCTGGGGGCGTGGCCAATTTTATTATTG
ATGTTATCACGGCCTTGGATCAGAACAATGCATCGGAGGTTCTGAAAGAC
GTTGACATGGCAAAGAAGTTTATCGACCGCCTCGTTAACAAGTTCAAACC
TGATGTGCTTC
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