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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 55529.EKX53345 |
| PFAMs | PseudoU_synth_2 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.02e-59 |
| EggNOG OGs | COG0564@1|root,KOG1919@2759|Eukaryota |
| Description | pseudouridine synthase activity |
| COG category | J |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1498.t1.stop1 | Gcaud1498.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1284_length_11823_cov_4.016280 9367..9369 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1498.t1.start1 | Gcaud1498.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1284_length_11823_cov_4.016280 10425..10427 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1498.t1 ID=Gcaud1498.t1|Name=Gcaud1498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=275bp
LTQAEKRQLRLRSKAIPLVADHDPLEIVFEDDTFLAVNKPPYLKMHPSHR
FEGGSLLNRAIGYLGYPPRLLHRLDMHTTGIVIMAKTKQVCHPIMQQFMH
GSVKKQYLCLVDGYIHQQPTTSFTVDAPIQRSNQCYVREVGDSNPDSKPA
KTVYTLLDKSQSKQVMLLRATPHTGRTHQIRVHAASKSLPIIGDDLYNPK
EHAMYADYDEINAAARDETLVKYGDDNPLRKGLKLHAWSISLVNPLTNER
VSFTAPPPSHMNSLIEWCGLSLPR* back to topspliced messenger RNA >Gcaud1498.t1 ID=Gcaud1498.t1|Name=Gcaud1498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=825bp|location=Sequence derived from alignment at NODE_1284_length_11823_cov_4.016280:9367..10427- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TTGACACAGGCCGAGAAGCGACAGTTGCGCCTGCGGTCAAAGGCCATTCC
TCTCGTTGCGGACCACGACCCGCTGGAAATTGTCTTCGAAGACGACACCT
TTTTGGCCGTGAATAAACCGCCTTATCTTAAGATGCATCCCAGTCATCGC
TTTGAGGGCGGCTCTTTGTTAAATCGCGCCATCGGTTATCTGGGGTATCC
GCCGCGTCTCTTGCATCGATTAGATATGCACACTACGGGAATTGTAATCA
TGGCAAAGACCAAACAAGTCTGTCATCCAATCATGCAACAGTTCATGCAC
GGCAGCGTAAAAAAGCAGTACCTGTGTCTCGTCGACGGCTACATCCACCA
ACAACCCACCACCTCCTTCACAGTGGATGCGCCGATACAACGCTCAAATC
AGTGTTACGTCCGAGAAGTGGGTGATTCTAATCCCGATTCAAAGCCCGCA
AAAACCGTGTACACACTTCTTGACAAGTCGCAGTCAAAGCAAGTCATGCT
TCTTCGCGCCACTCCTCACACCGGTCGAACCCATCAAATCCGAGTCCACG
CCGCCAGCAAGTCGTTACCAATCATTGGAGACGATCTCTATAACCCAAAA
GAACATGCCATGTATGCAGATTATGACGAGATCAACGCCGCCGCACGTGA
TGAAACGCTTGTGAAGTATGGTGATGATAATCCGCTTCGAAAAGGTCTCA
AACTGCATGCCTGGAGCATCTCGCTGGTCAATCCTTTGACCAACGAGCGC
GTCTCGTTTACCGCACCGCCGCCGTCGCATATGAACAGCCTTATCGAATG
GTGTGGCCTGAGCCTGCCAAGATGA back to topprotein sequence of Gcaud1498.t1 >Gcaud1498.t1 ID=Gcaud1498.t1|Name=Gcaud1498.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=275bp
LTQAEKRQLRLRSKAIPLVADHDPLEIVFEDDTFLAVNKPPYLKMHPSHR
FEGGSLLNRAIGYLGYPPRLLHRLDMHTTGIVIMAKTKQVCHPIMQQFMH
GSVKKQYLCLVDGYIHQQPTTSFTVDAPIQRSNQCYVREVGDSNPDSKPA
KTVYTLLDKSQSKQVMLLRATPHTGRTHQIRVHAASKSLPIIGDDLYNPK
EHAMYADYDEINAAARDETLVKYGDDNPLRKGLKLHAWSISLVNPLTNER
VSFTAPPPSHMNSLIEWCGLSLPR* back to topmRNA from alignment at NODE_1284_length_11823_cov_4.016280:9367..10427- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1498.t1 ID=Gcaud1498.t1|Name=Gcaud1498.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1061bp|location=Sequence derived from alignment at NODE_1284_length_11823_cov_4.016280:9367..10427- (Gracilaria caudata M_176_S67 male)
TTGACACAGGCCGAGAAGCGACAGTTGCGCCTGCGGTCAAAGGCCATTCC
TCTCGTTGCGGACCACGACCCGCTGGAAATTGTCTTCGAAGACGACACCT
TTTTGGCCGTGAATAAACCGCCTTATCTTAAGATGCATCCCAGTCATCGC
TTTGAGGGCGGCTCTTTGTTAAATCGCGCCATCGGTTATCTGGGGTATCC
GCCGCGTCTCTTGCATCGATTAGATATGGTACGTTGCTCACAACCTCAAC
GACAACGGTCTTCTTCACGTTTGTTAACCGAAACCACCCCCATTCTGTCG
ATGCAAAGCACACTACGGGAATTGTAAGTTGTTTACCCTCGTACCAATCA
GCTTTCGATCTTCCCCGCTGAAGCGCCCCAAACTAACCCGTCGAACCAAA
CAAAACAAAAGGTAATCATGGCAAAGACCAAACAAGTCTGTCATCCAATC
ATGCAACAGTTCATGCACGGCAGCGTAAAAAAGCAGTACCTGTGTCTCGT
CGACGGCTACATCCACCAACAACCCACCACCTCCTTCACAGTGGATGCGC
CGATACAACGCTCAAATCAGTGTTACGTCCGAGAAGTGGGTGATTCTAAT
CCCGATTCAAAGCCCGCAAAAACCGTGTACACACTTCTTGACAAGTCGCA
GTCAAAGCAAGTCATGCTTCTTCGCGCCACTCCTCACACCGGTCGAACCC
ATCAAATCCGAGTCCACGCCGCCAGCAAGTCGTTACCAATCATTGGAGAC
GATCTCTATAACCCAAAAGAGTAAGTTCGCCCTAATCCACTTCATACACA
ATACCCTGCTTTCAGCAACTCACCACTTGTTACCTAAGACATGCCATGTA
TGCAGATTATGACGAGATCAACGCCGCCGCACGTGATGAAACGCTTGTGA
AGTATGGTGATGATAATCCGCTTCGAAAAGGTCTCAAACTGCATGCCTGG
AGCATCTCGCTGGTCAATCCTTTGACCAACGAGCGCGTCTCGTTTACCGC
ACCGCCGCCGTCGCATATGAACAGCCTTATCGAATGGTGTGGCCTGAGCC
TGCCAAGATGA back to topCoding sequence (CDS) from alignment at NODE_1284_length_11823_cov_4.016280:9367..10427- >Gcaud1498.t1 ID=Gcaud1498.t1|Name=Gcaud1498.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=825bp|location=Sequence derived from alignment at NODE_1284_length_11823_cov_4.016280:9367..10427- (Gracilaria caudata M_176_S67 male)
TTGACACAGGCCGAGAAGCGACAGTTGCGCCTGCGGTCAAAGGCCATTCC
TCTCGTTGCGGACCACGACCCGCTGGAAATTGTCTTCGAAGACGACACCT
TTTTGGCCGTGAATAAACCGCCTTATCTTAAGATGCATCCCAGTCATCGC
TTTGAGGGCGGCTCTTTGTTAAATCGCGCCATCGGTTATCTGGGGTATCC
GCCGCGTCTCTTGCATCGATTAGATATGCACACTACGGGAATTGTAATCA
TGGCAAAGACCAAACAAGTCTGTCATCCAATCATGCAACAGTTCATGCAC
GGCAGCGTAAAAAAGCAGTACCTGTGTCTCGTCGACGGCTACATCCACCA
ACAACCCACCACCTCCTTCACAGTGGATGCGCCGATACAACGCTCAAATC
AGTGTTACGTCCGAGAAGTGGGTGATTCTAATCCCGATTCAAAGCCCGCA
AAAACCGTGTACACACTTCTTGACAAGTCGCAGTCAAAGCAAGTCATGCT
TCTTCGCGCCACTCCTCACACCGGTCGAACCCATCAAATCCGAGTCCACG
CCGCCAGCAAGTCGTTACCAATCATTGGAGACGATCTCTATAACCCAAAA
GAACATGCCATGTATGCAGATTATGACGAGATCAACGCCGCCGCACGTGA
TGAAACGCTTGTGAAGTATGGTGATGATAATCCGCTTCGAAAAGGTCTCA
AACTGCATGCCTGGAGCATCTCGCTGGTCAATCCTTTGACCAACGAGCGC
GTCTCGTTTACCGCACCGCCGCCGTCGCATATGAACAGCCTTATCGAATG
GTGTGGCCTGAGCCTGCCAAGATGA back to top
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