Gcaud1455.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1455.t1
Unique Name	Gcaud1455.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:2823..4955 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	290315.Clim_2051
Preferred name	menC
PFAMs	MR_MLE_C
Max annot lvl	1090\|Chlorobi
KEGG rclass	RC01053
KEGG ko	ko:K02549
KEGG Reaction	R04031
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00116
Evalue	1.85e-28
EggNOG OGs	COG4948@1\|root,COG4948@2\|Bacteria,1FE1S@1090\|Chlorobi
EC	4.2.1.113
Description	Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB)
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1455	Gcaud1455	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 2823..4955 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1455.t1.stop1	Gcaud1455.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 2823..2825 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1455.t1.CDS1	Gcaud1455.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 2823..4955 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1455.t1.exon1	Gcaud1455.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 2823..4955 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1455.t1.start1	Gcaud1455.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 4953..4955 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1455.t1	Gcaud1455.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 2823..4955 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:2823..4955-
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:2823..4955-

mRNA sequence

>Gcaud1455.t1 ID=Gcaud1455.t1|Name=Gcaud1455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp
MESNESLRRPQHVTWRTVQQNAITADVCRASDSIDCEKRKYVILLHGWMG
QRSDLRFLAPPLVELGYCVVALALPYHGQSKSEVQSCPEAAKLLSDSIPT
LIQNHEQKPLSVTLVGYSLGGRIAFEIAALVQKKSIQSIHIESVVLISSA
APPRDESERKECRILSQKRSEKLLDSNFSSEMYEDWLKNSWYAAELWGNI
RGKPFFNQLISDKLDAFNERRRVAWALAAKHMCRSTMTSLSEPLKCPILY
LFGTCDSKYSAMATKLQRNCSNFRCVPIEGAGHNLPWDSPSLLVSHIAVF
LQDKSGEGMASSAKLSKVVFTRYSIPLKQNIVVAGHEVTEREGLVVALLA
SNNQIGVGDICPLPGLHEEDTNHCVEEVRDLSSKLQALPKLTEISEQGFM
EYLNLIHSYSPVSRNGFEAAFIHLLSEVLHRPISYSIRLCASLFLHDKDL
TPAEYVDMNGVLPRVSTHADSQEGSLHSRYRESVQTSPFKVMKLKVGACK
SVKEEVENVRTAISTAKSSGKRIRLDANRAWTISQYEQFETLLRDVVEWI
EYIEEPFSTPQQLYQFIVAQCDKSRRIPLALDESLIDSSFESIQDMISSG
LCRTLVLKPAVIGSFNHLCQLAYLAERHMCEVVFSAVFESGIGSAWTAAL
ASVLGGKDQYHGLGTFRHLKRDVVEPSFGETVVKENSRILMERCEHFLRR
AASSLFVKSE*

spliced messenger RNA

>Gcaud1455.t1 ID=Gcaud1455.t1|Name=Gcaud1455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:2823..4955- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGTAACGAGTCACTACGGCGACCTCAGCACGTCACTTGGAGAAC
AGTTCAACAGAATGCAATTACGGCAGATGTTTGCCGTGCTTCGGATTCTA
TTGACTGCGAAAAGCGCAAATATGTAATTCTTTTGCACGGATGGATGGGT
CAGAGAAGCGATCTTCGCTTTCTCGCGCCTCCACTCGTCGAGCTGGGCTA
TTGCGTTGTAGCCCTGGCCTTGCCTTATCATGGCCAGTCTAAGAGTGAAG
TACAATCCTGCCCTGAGGCAGCAAAGCTCTTGTCGGATTCTATCCCGACG
TTGATTCAGAATCACGAACAAAAGCCCTTGTCCGTAACTCTCGTGGGTTA
CTCGTTGGGAGGTCGCATTGCCTTCGAAATAGCCGCATTGGTACAGAAAA
AGAGCATACAATCAATTCACATTGAATCAGTAGTTTTAATTAGCTCTGCA
GCCCCGCCTCGCGATGAATCCGAGAGAAAGGAGTGTAGAATTCTTTCTCA
GAAAAGGTCTGAGAAGTTGCTTGACAGCAACTTCTCTTCTGAAATGTACG
AGGATTGGCTGAAAAACTCCTGGTATGCTGCAGAGCTATGGGGAAACATT
CGGGGAAAACCTTTCTTCAATCAGCTGATTTCTGACAAACTGGATGCCTT
CAACGAAAGGAGGCGAGTTGCGTGGGCACTGGCTGCCAAGCACATGTGCC
GGTCTACGATGACTTCCCTTTCGGAGCCCTTGAAGTGCCCCATTCTTTAT
TTGTTTGGGACTTGTGATAGCAAGTATTCGGCAATGGCCACAAAACTGCA
AAGGAATTGTTCGAACTTTCGGTGTGTTCCAATCGAAGGTGCTGGTCACA
ATTTACCTTGGGATTCACCGAGCCTGCTAGTGTCTCACATTGCTGTGTTT
CTGCAAGATAAAAGTGGCGAGGGCATGGCCTCCTCTGCTAAACTGTCGAA
GGTGGTTTTCACGAGATACTCAATTCCTCTGAAGCAAAATATTGTTGTAG
CGGGACATGAGGTCACGGAAAGAGAAGGACTCGTAGTCGCTCTGCTGGCC
AGTAATAACCAAATAGGTGTTGGGGATATTTGTCCGCTCCCAGGCCTTCA
TGAAGAAGACACCAACCACTGTGTGGAAGAGGTTCGAGATCTGTCTTCGA
AACTTCAAGCACTGCCAAAACTAACCGAGATATCAGAGCAGGGTTTCATG
GAATATCTTAACCTTATCCACAGCTACTCCCCTGTTTCAAGAAATGGGTT
TGAGGCTGCTTTCATTCATCTCCTTAGCGAAGTTCTTCATCGACCAATTT
CCTACTCAATTCGTTTGTGCGCTTCTTTGTTTTTACATGACAAAGACTTG
ACCCCTGCAGAGTATGTGGACATGAACGGAGTTCTACCGAGAGTTTCAAC
CCACGCAGATTCGCAAGAGGGGTCATTACATTCTCGATATCGTGAATCTG
TGCAGACTTCGCCGTTTAAGGTAATGAAACTGAAGGTTGGAGCCTGTAAA
AGCGTAAAAGAAGAAGTCGAAAATGTCCGGACGGCAATCTCAACAGCAAA
GAGTTCTGGAAAACGAATACGACTCGATGCCAACAGGGCTTGGACGATTT
CGCAATACGAACAATTCGAAACTCTTTTAAGGGATGTCGTTGAATGGATC
GAGTACATTGAGGAACCCTTCAGTACTCCCCAGCAGTTGTATCAGTTCAT
TGTGGCCCAATGTGATAAATCGCGTAGAATTCCTCTAGCTTTGGATGAGT
CTCTAATTGACAGTTCTTTCGAAAGTATTCAAGATATGATCTCTTCGGGG
TTATGTCGAACTCTCGTTTTGAAGCCCGCAGTGATCGGTTCATTTAACCA
TCTTTGTCAACTCGCGTATCTTGCGGAAAGGCACATGTGTGAGGTTGTCT
TCAGCGCAGTATTTGAGAGCGGGATTGGATCAGCTTGGACTGCAGCCCTT
GCCAGTGTTTTGGGCGGTAAGGATCAGTATCATGGGTTAGGAACGTTTAG
GCACCTTAAGAGGGACGTAGTTGAGCCGTCTTTCGGTGAAACAGTAGTGA
AGGAAAACAGTCGAATACTAATGGAAAGATGTGAGCATTTCCTTCGCCGA
GCAGCGAGCTCGTTGTTTGTCAAATCGGAATGA

protein sequence of Gcaud1455.t1

>Gcaud1455.t1 ID=Gcaud1455.t1|Name=Gcaud1455.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=711bp
MESNESLRRPQHVTWRTVQQNAITADVCRASDSIDCEKRKYVILLHGWMG
QRSDLRFLAPPLVELGYCVVALALPYHGQSKSEVQSCPEAAKLLSDSIPT
LIQNHEQKPLSVTLVGYSLGGRIAFEIAALVQKKSIQSIHIESVVLISSA
APPRDESERKECRILSQKRSEKLLDSNFSSEMYEDWLKNSWYAAELWGNI
RGKPFFNQLISDKLDAFNERRRVAWALAAKHMCRSTMTSLSEPLKCPILY
LFGTCDSKYSAMATKLQRNCSNFRCVPIEGAGHNLPWDSPSLLVSHIAVF
LQDKSGEGMASSAKLSKVVFTRYSIPLKQNIVVAGHEVTEREGLVVALLA
SNNQIGVGDICPLPGLHEEDTNHCVEEVRDLSSKLQALPKLTEISEQGFM
EYLNLIHSYSPVSRNGFEAAFIHLLSEVLHRPISYSIRLCASLFLHDKDL
TPAEYVDMNGVLPRVSTHADSQEGSLHSRYRESVQTSPFKVMKLKVGACK
SVKEEVENVRTAISTAKSSGKRIRLDANRAWTISQYEQFETLLRDVVEWI
EYIEEPFSTPQQLYQFIVAQCDKSRRIPLALDESLIDSSFESIQDMISSG
LCRTLVLKPAVIGSFNHLCQLAYLAERHMCEVVFSAVFESGIGSAWTAAL
ASVLGGKDQYHGLGTFRHLKRDVVEPSFGETVVKENSRILMERCEHFLRR
AASSLFVKSE*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:2823..4955-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1455.t1 ID=Gcaud1455.t1|Name=Gcaud1455.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:2823..4955- (Gracilaria caudata M_176_S67 male)
ATGGAAAGTAACGAGTCACTACGGCGACCTCAGCACGTCACTTGGAGAAC
AGTTCAACAGAATGCAATTACGGCAGATGTTTGCCGTGCTTCGGATTCTA
TTGACTGCGAAAAGCGCAAATATGTAATTCTTTTGCACGGATGGATGGGT
CAGAGAAGCGATCTTCGCTTTCTCGCGCCTCCACTCGTCGAGCTGGGCTA
TTGCGTTGTAGCCCTGGCCTTGCCTTATCATGGCCAGTCTAAGAGTGAAG
TACAATCCTGCCCTGAGGCAGCAAAGCTCTTGTCGGATTCTATCCCGACG
TTGATTCAGAATCACGAACAAAAGCCCTTGTCCGTAACTCTCGTGGGTTA
CTCGTTGGGAGGTCGCATTGCCTTCGAAATAGCCGCATTGGTACAGAAAA
AGAGCATACAATCAATTCACATTGAATCAGTAGTTTTAATTAGCTCTGCA
GCCCCGCCTCGCGATGAATCCGAGAGAAAGGAGTGTAGAATTCTTTCTCA
GAAAAGGTCTGAGAAGTTGCTTGACAGCAACTTCTCTTCTGAAATGTACG
AGGATTGGCTGAAAAACTCCTGGTATGCTGCAGAGCTATGGGGAAACATT
CGGGGAAAACCTTTCTTCAATCAGCTGATTTCTGACAAACTGGATGCCTT
CAACGAAAGGAGGCGAGTTGCGTGGGCACTGGCTGCCAAGCACATGTGCC
GGTCTACGATGACTTCCCTTTCGGAGCCCTTGAAGTGCCCCATTCTTTAT
TTGTTTGGGACTTGTGATAGCAAGTATTCGGCAATGGCCACAAAACTGCA
AAGGAATTGTTCGAACTTTCGGTGTGTTCCAATCGAAGGTGCTGGTCACA
ATTTACCTTGGGATTCACCGAGCCTGCTAGTGTCTCACATTGCTGTGTTT
CTGCAAGATAAAAGTGGCGAGGGCATGGCCTCCTCTGCTAAACTGTCGAA
GGTGGTTTTCACGAGATACTCAATTCCTCTGAAGCAAAATATTGTTGTAG
CGGGACATGAGGTCACGGAAAGAGAAGGACTCGTAGTCGCTCTGCTGGCC
AGTAATAACCAAATAGGTGTTGGGGATATTTGTCCGCTCCCAGGCCTTCA
TGAAGAAGACACCAACCACTGTGTGGAAGAGGTTCGAGATCTGTCTTCGA
AACTTCAAGCACTGCCAAAACTAACCGAGATATCAGAGCAGGGTTTCATG
GAATATCTTAACCTTATCCACAGCTACTCCCCTGTTTCAAGAAATGGGTT
TGAGGCTGCTTTCATTCATCTCCTTAGCGAAGTTCTTCATCGACCAATTT
CCTACTCAATTCGTTTGTGCGCTTCTTTGTTTTTACATGACAAAGACTTG
ACCCCTGCAGAGTATGTGGACATGAACGGAGTTCTACCGAGAGTTTCAAC
CCACGCAGATTCGCAAGAGGGGTCATTACATTCTCGATATCGTGAATCTG
TGCAGACTTCGCCGTTTAAGGTAATGAAACTGAAGGTTGGAGCCTGTAAA
AGCGTAAAAGAAGAAGTCGAAAATGTCCGGACGGCAATCTCAACAGCAAA
GAGTTCTGGAAAACGAATACGACTCGATGCCAACAGGGCTTGGACGATTT
CGCAATACGAACAATTCGAAACTCTTTTAAGGGATGTCGTTGAATGGATC
GAGTACATTGAGGAACCCTTCAGTACTCCCCAGCAGTTGTATCAGTTCAT
TGTGGCCCAATGTGATAAATCGCGTAGAATTCCTCTAGCTTTGGATGAGT
CTCTAATTGACAGTTCTTTCGAAAGTATTCAAGATATGATCTCTTCGGGG
TTATGTCGAACTCTCGTTTTGAAGCCCGCAGTGATCGGTTCATTTAACCA
TCTTTGTCAACTCGCGTATCTTGCGGAAAGGCACATGTGTGAGGTTGTCT
TCAGCGCAGTATTTGAGAGCGGGATTGGATCAGCTTGGACTGCAGCCCTT
GCCAGTGTTTTGGGCGGTAAGGATCAGTATCATGGGTTAGGAACGTTTAG
GCACCTTAAGAGGGACGTAGTTGAGCCGTCTTTCGGTGAAACAGTAGTGA
AGGAAAACAGTCGAATACTAATGGAAAGATGTGAGCATTTCCTTCGCCGA
GCAGCGAGCTCGTTGTTTGTCAAATCGGAATGA

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:2823..4955-

>Gcaud1455.t1 ID=Gcaud1455.t1|Name=Gcaud1455.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2133bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:2823..4955- (Gracilaria caudata M_176_S67 male)
ATGGAAAGTAACGAGTCACTACGGCGACCTCAGCACGTCACTTGGAGAAC
AGTTCAACAGAATGCAATTACGGCAGATGTTTGCCGTGCTTCGGATTCTA
TTGACTGCGAAAAGCGCAAATATGTAATTCTTTTGCACGGATGGATGGGT
CAGAGAAGCGATCTTCGCTTTCTCGCGCCTCCACTCGTCGAGCTGGGCTA
TTGCGTTGTAGCCCTGGCCTTGCCTTATCATGGCCAGTCTAAGAGTGAAG
TACAATCCTGCCCTGAGGCAGCAAAGCTCTTGTCGGATTCTATCCCGACG
TTGATTCAGAATCACGAACAAAAGCCCTTGTCCGTAACTCTCGTGGGTTA
CTCGTTGGGAGGTCGCATTGCCTTCGAAATAGCCGCATTGGTACAGAAAA
AGAGCATACAATCAATTCACATTGAATCAGTAGTTTTAATTAGCTCTGCA
GCCCCGCCTCGCGATGAATCCGAGAGAAAGGAGTGTAGAATTCTTTCTCA
GAAAAGGTCTGAGAAGTTGCTTGACAGCAACTTCTCTTCTGAAATGTACG
AGGATTGGCTGAAAAACTCCTGGTATGCTGCAGAGCTATGGGGAAACATT
CGGGGAAAACCTTTCTTCAATCAGCTGATTTCTGACAAACTGGATGCCTT
CAACGAAAGGAGGCGAGTTGCGTGGGCACTGGCTGCCAAGCACATGTGCC
GGTCTACGATGACTTCCCTTTCGGAGCCCTTGAAGTGCCCCATTCTTTAT
TTGTTTGGGACTTGTGATAGCAAGTATTCGGCAATGGCCACAAAACTGCA
AAGGAATTGTTCGAACTTTCGGTGTGTTCCAATCGAAGGTGCTGGTCACA
ATTTACCTTGGGATTCACCGAGCCTGCTAGTGTCTCACATTGCTGTGTTT
CTGCAAGATAAAAGTGGCGAGGGCATGGCCTCCTCTGCTAAACTGTCGAA
GGTGGTTTTCACGAGATACTCAATTCCTCTGAAGCAAAATATTGTTGTAG
CGGGACATGAGGTCACGGAAAGAGAAGGACTCGTAGTCGCTCTGCTGGCC
AGTAATAACCAAATAGGTGTTGGGGATATTTGTCCGCTCCCAGGCCTTCA
TGAAGAAGACACCAACCACTGTGTGGAAGAGGTTCGAGATCTGTCTTCGA
AACTTCAAGCACTGCCAAAACTAACCGAGATATCAGAGCAGGGTTTCATG
GAATATCTTAACCTTATCCACAGCTACTCCCCTGTTTCAAGAAATGGGTT
TGAGGCTGCTTTCATTCATCTCCTTAGCGAAGTTCTTCATCGACCAATTT
CCTACTCAATTCGTTTGTGCGCTTCTTTGTTTTTACATGACAAAGACTTG
ACCCCTGCAGAGTATGTGGACATGAACGGAGTTCTACCGAGAGTTTCAAC
CCACGCAGATTCGCAAGAGGGGTCATTACATTCTCGATATCGTGAATCTG
TGCAGACTTCGCCGTTTAAGGTAATGAAACTGAAGGTTGGAGCCTGTAAA
AGCGTAAAAGAAGAAGTCGAAAATGTCCGGACGGCAATCTCAACAGCAAA
GAGTTCTGGAAAACGAATACGACTCGATGCCAACAGGGCTTGGACGATTT
CGCAATACGAACAATTCGAAACTCTTTTAAGGGATGTCGTTGAATGGATC
GAGTACATTGAGGAACCCTTCAGTACTCCCCAGCAGTTGTATCAGTTCAT
TGTGGCCCAATGTGATAAATCGCGTAGAATTCCTCTAGCTTTGGATGAGT
CTCTAATTGACAGTTCTTTCGAAAGTATTCAAGATATGATCTCTTCGGGG
TTATGTCGAACTCTCGTTTTGAAGCCCGCAGTGATCGGTTCATTTAACCA
TCTTTGTCAACTCGCGTATCTTGCGGAAAGGCACATGTGTGAGGTTGTCT
TCAGCGCAGTATTTGAGAGCGGGATTGGATCAGCTTGGACTGCAGCCCTT
GCCAGTGTTTTGGGCGGTAAGGATCAGTATCATGGGTTAGGAACGTTTAG
GCACCTTAAGAGGGACGTAGTTGAGCCGTCTTTCGGTGAAACAGTAGTGA
AGGAAAACAGTCGAATACTAATGGAAAGATGTGAGCATTTCCTTCGCCGA
GCAGCGAGCTCGTTGTTTGTCAAATCGGAATGA