Gcaud1450.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1450.t1
Unique Name	Gcaud1450.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1295_length_11728_cov_4.118158	contig	NODE_1295_length_11728_cov_4.118158:587..1744 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1450	Gcaud1450	Gracilaria caudata M_176_S67 male	gene	NODE_1295_length_11728_cov_4.118158 587..1744 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1	Gcaud1450.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1295_length_11728_cov_4.118158 587..1744 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1.start1	Gcaud1450.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1295_length_11728_cov_4.118158 587..589 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1.CDS1	Gcaud1450.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1295_length_11728_cov_4.118158 587..1545 +
Gcaud1450.t1.CDS2	Gcaud1450.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1295_length_11728_cov_4.118158 1735..1744 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1.exon1	Gcaud1450.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1295_length_11728_cov_4.118158 587..1545 +
Gcaud1450.t1.exon2	Gcaud1450.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1295_length_11728_cov_4.118158 1735..1744 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1.intron1	Gcaud1450.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1295_length_11728_cov_4.118158 1546..1734 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1450.t1.stop1	Gcaud1450.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1295_length_11728_cov_4.118158 1742..1744 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+
coding sequence from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+

mRNA sequence

>Gcaud1450.t1 ID=Gcaud1450.t1|Name=Gcaud1450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=323bp
MYVVPRRSLKLTILSCEALPPITSDRLWANERVRAEHDTLKRKRDQAERL
LRQNADNASDYSDESMLMSFNIGPSALGSPQVALYMEYLRAVGGLQDFHA
MYGDSAASDKKIAPNCYASVTLERNSLAPPLAVTEVKRANYDPFWNCTTE
DINIDLMLLCGEMESATYLYCQRLRMAVYHDFGFGQDASSTGWKHDKSRD
GLLIGEAFLAVGDLFADPCQKRHELKVYSSDHTLISGCTLHIETQVCCKS
AKVPSAFPYQGAFPTMIPVEIEKDCGTGESAKNECANNCGGADVALSVCE
SISLPSAVRLAVGSSKGSRKMT*

spliced messenger RNA

>Gcaud1450.t1 ID=Gcaud1450.t1|Name=Gcaud1450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=969bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTTGTTCCCAGGAGGAGTCTCAAGCTAACCATCTTGTCGTGCGA
GGCGCTGCCGCCAATCACGTCTGATCGACTGTGGGCGAACGAGCGTGTCA
GAGCTGAGCACGACACGCTCAAGCGCAAGCGTGACCAAGCCGAACGACTA
CTGCGTCAAAACGCGGACAATGCCTCAGACTATTCCGATGAATCCATGCT
TATGTCATTTAATATCGGCCCCAGTGCGCTCGGCTCGCCGCAGGTAGCGT
TGTACATGGAATACCTCAGGGCGGTGGGCGGTCTGCAGGACTTTCACGCC
ATGTACGGCGATTCGGCCGCGTCGGACAAAAAGATTGCGCCCAACTGCTA
CGCTAGCGTGACACTGGAGCGCAACAGCCTGGCGCCGCCGCTGGCGGTCA
CTGAGGTGAAGCGAGCCAACTACGACCCGTTCTGGAACTGCACCACCGAG
GACATCAACATAGATCTGATGCTGTTGTGCGGCGAGATGGAGAGCGCCAC
GTACCTTTACTGCCAGCGCCTCAGAATGGCGGTGTACCACGACTTTGGCT
TTGGACAGGATGCCAGTTCCACCGGCTGGAAGCACGACAAATCGCGCGAC
GGCTTGCTCATCGGCGAGGCTTTTCTCGCGGTGGGCGATTTGTTTGCTGA
CCCGTGCCAGAAACGGCATGAATTGAAGGTGTACTCCAGCGATCACACTC
TGATCTCCGGCTGCACGCTGCACATTGAGACACAGGTGTGTTGCAAGAGC
GCGAAGGTGCCCAGCGCGTTCCCCTATCAGGGCGCATTCCCAACCATGAT
TCCAGTGGAGATCGAGAAGGACTGCGGAACAGGCGAGTCGGCCAAAAACG
AGTGCGCAAACAACTGCGGTGGTGCTGACGTGGCGCTAAGCGTTTGTGAG
TCCATTTCTTTGCCGTCCGCGGTGAGGCTGGCCGTGGGCTCCTCAAAGGG
CTCGCgcaaGATGACCTAA

protein sequence of Gcaud1450.t1

>Gcaud1450.t1 ID=Gcaud1450.t1|Name=Gcaud1450.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=323bp
MYVVPRRSLKLTILSCEALPPITSDRLWANERVRAEHDTLKRKRDQAERL
LRQNADNASDYSDESMLMSFNIGPSALGSPQVALYMEYLRAVGGLQDFHA
MYGDSAASDKKIAPNCYASVTLERNSLAPPLAVTEVKRANYDPFWNCTTE
DINIDLMLLCGEMESATYLYCQRLRMAVYHDFGFGQDASSTGWKHDKSRD
GLLIGEAFLAVGDLFADPCQKRHELKVYSSDHTLISGCTLHIETQVCCKS
AKVPSAFPYQGAFPTMIPVEIEKDCGTGESAKNECANNCGGADVALSVCE
SISLPSAVRLAVGSSKGSRKMT*

mRNA from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1450.t1 ID=Gcaud1450.t1|Name=Gcaud1450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+ (Gracilaria caudata M_176_S67 male)
ATGTACGTTGTTCCCAGGAGGAGTCTCAAGCTAACCATCTTGTCGTGCGA
GGCGCTGCCGCCAATCACGTCTGATCGACTGTGGGCGAACGAGCGTGTCA
GAGCTGAGCACGACACGCTCAAGCGCAAGCGTGACCAAGCCGAACGACTA
CTGCGTCAAAACGCGGACAATGCCTCAGACTATTCCGATGAATCCATGCT
TATGTCATTTAATATCGGCCCCAGTGCGCTCGGCTCGCCGCAGGTAGCGT
TGTACATGGAATACCTCAGGGCGGTGGGCGGTCTGCAGGACTTTCACGCC
ATGTACGGCGATTCGGCCGCGTCGGACAAAAAGATTGCGCCCAACTGCTA
CGCTAGCGTGACACTGGAGCGCAACAGCCTGGCGCCGCCGCTGGCGGTCA
CTGAGGTGAAGCGAGCCAACTACGACCCGTTCTGGAACTGCACCACCGAG
GACATCAACATAGATCTGATGCTGTTGTGCGGCGAGATGGAGAGCGCCAC
GTACCTTTACTGCCAGCGCCTCAGAATGGCGGTGTACCACGACTTTGGCT
TTGGACAGGATGCCAGTTCCACCGGCTGGAAGCACGACAAATCGCGCGAC
GGCTTGCTCATCGGCGAGGCTTTTCTCGCGGTGGGCGATTTGTTTGCTGA
CCCGTGCCAGAAACGGCATGAATTGAAGGTGTACTCCAGCGATCACACTC
TGATCTCCGGCTGCACGCTGCACATTGAGACACAGGTGTGTTGCAAGAGC
GCGAAGGTGCCCAGCGCGTTCCCCTATCAGGGCGCATTCCCAACCATGAT
TCCAGTGGAGATCGAGAAGGACTGCGGAACAGGCGAGTCGGCCAAAAACG
AGTGCGCAAACAACTGCGGTGGTGCTGACGTGGCGCTAAGCGTTTGTGAG
TCCATTTCTTTGCCGTCCGCGGTGAGGCTGGCCGTGGGCTCCTCAAAGGG
CTCGCgcaagtgcaagaccacgtgcaagaccacgtgcaagtccaagtgca
aaagcaaatgcaagtcgcaTAGATGCTGACGACAGCGCTTTTTCGGCGGC
GGTTCCCTTTTTCTGACGTGAGCGCGGCGTGACGGGCAAATGCCTCGGCG
TTACGCGTGCGCGCATTGTAAAGCTTGGAAAACGGCGATTCACATTAGGA
TGACCTAA

Coding sequence (CDS) from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+

>Gcaud1450.t1 ID=Gcaud1450.t1|Name=Gcaud1450.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=969bp|location=Sequence derived from alignment at NODE_1295_length_11728_cov_4.118158:587..1744+ (Gracilaria caudata M_176_S67 male)
ATGTACGTTGTTCCCAGGAGGAGTCTCAAGCTAACCATCTTGTCGTGCGA
GGCGCTGCCGCCAATCACGTCTGATCGACTGTGGGCGAACGAGCGTGTCA
GAGCTGAGCACGACACGCTCAAGCGCAAGCGTGACCAAGCCGAACGACTA
CTGCGTCAAAACGCGGACAATGCCTCAGACTATTCCGATGAATCCATGCT
TATGTCATTTAATATCGGCCCCAGTGCGCTCGGCTCGCCGCAGGTAGCGT
TGTACATGGAATACCTCAGGGCGGTGGGCGGTCTGCAGGACTTTCACGCC
ATGTACGGCGATTCGGCCGCGTCGGACAAAAAGATTGCGCCCAACTGCTA
CGCTAGCGTGACACTGGAGCGCAACAGCCTGGCGCCGCCGCTGGCGGTCA
CTGAGGTGAAGCGAGCCAACTACGACCCGTTCTGGAACTGCACCACCGAG
GACATCAACATAGATCTGATGCTGTTGTGCGGCGAGATGGAGAGCGCCAC
GTACCTTTACTGCCAGCGCCTCAGAATGGCGGTGTACCACGACTTTGGCT
TTGGACAGGATGCCAGTTCCACCGGCTGGAAGCACGACAAATCGCGCGAC
GGCTTGCTCATCGGCGAGGCTTTTCTCGCGGTGGGCGATTTGTTTGCTGA
CCCGTGCCAGAAACGGCATGAATTGAAGGTGTACTCCAGCGATCACACTC
TGATCTCCGGCTGCACGCTGCACATTGAGACACAGGTGTGTTGCAAGAGC
GCGAAGGTGCCCAGCGCGTTCCCCTATCAGGGCGCATTCCCAACCATGAT
TCCAGTGGAGATCGAGAAGGACTGCGGAACAGGCGAGTCGGCCAAAAACG
AGTGCGCAAACAACTGCGGTGGTGCTGACGTGGCGCTAAGCGTTTGTGAG
TCCATTTCTTTGCCGTCCGCGGTGAGGCTGGCCGTGGGCTCCTCAAAGGG
CTCGCgcaaGATGACCTAA