Gcaud1415.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1415.t1
Unique Name	Gcaud1415.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	155

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_672_length_19901_cov_4.681121	contig	NODE_672_length_19901_cov_4.681121:19272..19736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29730.Gorai.002G264100.1
PFAMs	Peptidase_S24,Peptidase_S26
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09648
KEGG Pathway	ko03060,map03060
Evalue	5.5e-06
EggNOG OGs	COG0681@1\|root,KOG1568@2759\|Eukaryota,37U5U@33090\|Viridiplantae,3GI9P@35493\|Streptophyta
Description	Mitochondrial inner membrane protease subunit
COG category	OU
BRITE	ko00000,ko00001,ko01000,ko01002,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1415	Gcaud1415	Gracilaria caudata M_176_S67 male	gene	NODE_672_length_19901_cov_4.681121 19272..19736 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1415.t1.start1	Gcaud1415.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_672_length_19901_cov_4.681121 19272..19274 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1415.t1.CDS1	Gcaud1415.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_672_length_19901_cov_4.681121 19272..19736 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1415.t1.exon1	Gcaud1415.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_672_length_19901_cov_4.681121 19272..19736 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1415.t1.stop1	Gcaud1415.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_672_length_19901_cov_4.681121 19734..19736 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1415.t1	Gcaud1415.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_672_length_19901_cov_4.681121 19272..19736 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+
coding sequence from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+

mRNA sequence

>Gcaud1415.t1 ID=Gcaud1415.t1|Name=Gcaud1415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=155bp
MVTRILSLLSYIPLAIVFHDTVATVHVETTDDMEPTIPSNTPCLITRNAK
PSNYRRGEILSIMAPDGHLTLRRVVALPGDFVRQASSTTVVPHGYIWVER
DHDQTNCELPSGKTPVALVTGRLTASLGGSVAVIPSKNVITPAMPYKGVN
ARPA*

spliced messenger RNA

>Gcaud1415.t1 ID=Gcaud1415.t1|Name=Gcaud1415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACACGAATACTTTCCCTTCTTTCGTACATTCCGCTGGCCATTGT
GTTCCATGATACTGTGGCCACCGTGCACGTCGAGACCACTGACGACATGG
AACCAACAATACCGTccaatacgccatgtctcataactcgaaatgctaag
cctagtaactaccgtcGTGGAGAAATTCTCTCCATAATGGCACCAGACGG
TCATTTAACACTGCGTCGAGTTGTCGCACTTCCTGGAGATTTTGTTCGTC
AGGCTTCATCAACCACGGTTGTTCCACATGGATATATTTGGGTTGAACGC
GACCACGATCAAACAAACTGCGAACTACCCAGCGGAAAGACTCCTGTTGC
TCTTGTTACAGGAAGGTTAACGGCCTCTCTTGGCGGGAGCGTTGCTGTGA
TCCCATCAAAGAATGTTATCACTCCTGCTATGCCTTACAAAGGAGTCAAC
GCGAGACCAGCTTAG

protein sequence of Gcaud1415.t1

>Gcaud1415.t1 ID=Gcaud1415.t1|Name=Gcaud1415.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=155bp
MVTRILSLLSYIPLAIVFHDTVATVHVETTDDMEPTIPSNTPCLITRNAK
PSNYRRGEILSIMAPDGHLTLRRVVALPGDFVRQASSTTVVPHGYIWVER
DHDQTNCELPSGKTPVALVTGRLTASLGGSVAVIPSKNVITPAMPYKGVN
ARPA*

mRNA from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1415.t1 ID=Gcaud1415.t1|Name=Gcaud1415.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+ (Gracilaria caudata M_176_S67 male)
ATGGTCACACGAATACTTTCCCTTCTTTCGTACATTCCGCTGGCCATTGT
GTTCCATGATACTGTGGCCACCGTGCACGTCGAGACCACTGACGACATGG
AACCAACAATACCGTccaatacgccatgtctcataactcgaaatgctaag
cctagtaactaccgtcGTGGAGAAATTCTCTCCATAATGGCACCAGACGG
TCATTTAACACTGCGTCGAGTTGTCGCACTTCCTGGAGATTTTGTTCGTC
AGGCTTCATCAACCACGGTTGTTCCACATGGATATATTTGGGTTGAACGC
GACCACGATCAAACAAACTGCGAACTACCCAGCGGAAAGACTCCTGTTGC
TCTTGTTACAGGAAGGTTAACGGCCTCTCTTGGCGGGAGCGTTGCTGTGA
TCCCATCAAAGAATGTTATCACTCCTGCTATGCCTTACAAAGGAGTCAAC
GCGAGACCAGCTTAG

Coding sequence (CDS) from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+

>Gcaud1415.t1 ID=Gcaud1415.t1|Name=Gcaud1415.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=465bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:19272..19736+ (Gracilaria caudata M_176_S67 male)
ATGGTCACACGAATACTTTCCCTTCTTTCGTACATTCCGCTGGCCATTGT
GTTCCATGATACTGTGGCCACCGTGCACGTCGAGACCACTGACGACATGG
AACCAACAATACCGTccaatacgccatgtctcataactcgaaatgctaag
cctagtaactaccgtcGTGGAGAAATTCTCTCCATAATGGCACCAGACGG
TCATTTAACACTGCGTCGAGTTGTCGCACTTCCTGGAGATTTTGTTCGTC
AGGCTTCATCAACCACGGTTGTTCCACATGGATATATTTGGGTTGAACGC
GACCACGATCAAACAAACTGCGAACTACCCAGCGGAAAGACTCCTGTTGC
TCTTGTTACAGGAAGGTTAACGGCCTCTCTTGGCGGGAGCGTTGCTGTGA
TCCCATCAAAGAATGTTATCACTCCTGCTATGCCTTACAAAGGAGTCAAC
GCGAGACCAGCTTAG