Gcaud1411.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1411.t1
Unique Name	Gcaud1411.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_672_length_19901_cov_4.681121	contig	NODE_672_length_19901_cov_4.681121:6445..8106 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1411	Gcaud1411	Gracilaria caudata M_176_S67 male	gene	NODE_672_length_19901_cov_4.681121 6445..8106 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1411.t1.stop1	Gcaud1411.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_672_length_19901_cov_4.681121 6445..6447 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1411.t1.CDS1	Gcaud1411.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_672_length_19901_cov_4.681121 6445..8106 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1411.t1.exon1	Gcaud1411.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_672_length_19901_cov_4.681121 6445..8106 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1411.t1.start1	Gcaud1411.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_672_length_19901_cov_4.681121 8104..8106 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1411.t1	Gcaud1411.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_672_length_19901_cov_4.681121 6445..8106 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_672_length_19901_cov_4.681121:6445..8106-
coding sequence from alignment at NODE_672_length_19901_cov_4.681121:6445..8106-

mRNA sequence

>Gcaud1411.t1 ID=Gcaud1411.t1|Name=Gcaud1411.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=554bp
MKCYMLFLILICLKVCSESFGQLTASNVTWRSWILRDSSHAGAWSEMAIA
IESLEKGDSIVAVDRQKLPSSNSVPTIYKVSQSGEVAWSLESKLVSGSPF
AMVINEMFDNAYVVVSSSSSAGSEYESQGQVLRFSGISSNGNSDDIGSKV
NEAVFFTTHSTGGVTKLFDCAINLVNGDVYVTGGTSGSLYGESHGKGDVI
VVRLAPSGDVVKAVQFGGHEDEFGRAIDISTGGTEIVVAAHRGLENGGSE
ALMYRLNAESLEISDGPQMLVEQGATPLFTVNDIAIGPPVQDGSVTTFMT
GKALAIPDRDVDLFMHVFAALKNDVSNVPVYVDGTSNGKGVDQGVAVRAA
SDGHAYCIGSSEAVDGVRRILLLVISPTGQVVLLTSRNEMNNMTRQERPT
DMALAQESNRTVVRYVGYTHDQNGTRPTFGLAMPAIGSVKPFEGFGEIVE
EAATGVGGENKGDENEEEKGMLVMNKNMIIIICSAGVGALALAALLAMIA
VLYRSSQRRGGEVNARQADRSAPGLRENELTFKGDNRGQKAVPQLDTLVT
TNY*

spliced messenger RNA

>Gcaud1411.t1 ID=Gcaud1411.t1|Name=Gcaud1411.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:6445..8106- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATGCTACATGCTATTTCTTATTCTCATATGTCTAAAGGTCTGTTC
TGAATCATTCGGGCAACTCACTGCAAGTAACGTGACATGGAGATCTTGGA
TTTTGAGAGATTCTTCTCATGCAGGTGCATGGTCTGAAATGGCAATTGCT
ATAGAGAGTCTCGAAAAGGGAGATTCTATAGTTGCAGTAGATCGCCAAAA
GCTTCCGTCTTCTAACTCGGTGCCCACCATTTACAAGGTGAGCCAATCTG
GAGAAGTTGCATGGAGCTTAGAGAGCAAGCTCGTTTCCGGATCTCCTTTT
GCCATGGTGATCAACGAAATGTTTGATAATGCTTACGTAGTGGTGTCCTC
ATCCTCGTCGGCAGGTTCAGAATATGAAAGTCAAGGACAAGTTCTGCGCT
TTTCCGGCATATCAAGTAACGGCAATTCGGATGACATTGGCTCGAAAGTA
AACGAGGCTGTGTTCTTTACCACACATTCTACAGGGGGGGTGACGAAGTT
GTTCGACTGCGCCATTAATTTAGTTAATGGCGATGTGTACGTAACTGGAG
GTACTTCGGGGTCCCTTTACGGAGAATCTCACGGGAAAGGTGACGTAATT
GTCGTTCGTTTGGCACCATCGGGAGATGTTGTGAAAGCTGTGCAGTTTGG
AGGTCACGAAGATGAATTCGGGCGAGCAATTGACATCAGTACAGGTGGGA
CGGAGATTGTGGTTGCTGCTCACAGAGGTTTGGAAAATGGAGGAAGTGAA
GCCTTAATGTATCGATTGAATGCTGAAAGCTTGGAGATCTCTGACGGGCC
TCAAATGTTAGTAGAGCAGGGTGCAACACCGTTGTTCACAGTTAACGACA
TTGCTATCGGACCACCCGTTCAGGATGGATCTGTGACCACATTCATGACC
GGGAAGGCTCTTGCTATACCGGATCGAGATGTCGACCTGTTCATGCATGT
TTTCGCTGCACTAAAGAATGATGTGTCTAATGTTCCAGTCTATGTTGACG
GGACATCGAACGGAAAGGGCGTGGATCAAGGTGTTGCCGTTCGCGCCGCT
TCAGATGGGCACGCCTATTGTATCGGATCTTCAGAAGCTGTCGATGGCGT
TCGTAGGATTCTACTCTTGGTCATATCCCCTACAGGTCAAGTGGTTCTTT
TGACGAGTCGAAACGAGATGAATAATATGACTCGACAGGAGAGACCCACT
GATATGGCTCTAGCACAAGAATCAAACCGAACAGTAGTGCGATACGTTGG
GTATACACACGATCAAAACGGAACCAGACCAACTTTCGGTCTTGCCATGC
CCGCGATTGGATCAGTTAAACCGTTTGAAGGATTTGGAGAAATTGTCGAA
GAAGCAGCCACAGGTGTTGGTGGCGAGAACAAGGGTGATGAAAACGAAGA
AGAAAAGGGAATGCTTGTAATGAATAAGAACATGATCATTATAATTTGCA
GTGCTGGAGTAGGGGCGCTTGCATTGGCAGCCCTTTTGGCGATGATTGCC
GTGCTGTACAGGTCGTCACAACGTCGCGGCGGTGAGGTTAATGCGAGACA
AGCCGATCGCTCTGCTCCTGGACTAAGGGAAAACGAACTGACATTCAAAG
GTGACAACCGGGGGCAAAAAGCTGTCCCGCAGTTGGATACTTTGGTAACA
ACAAACTATTAA

protein sequence of Gcaud1411.t1

>Gcaud1411.t1 ID=Gcaud1411.t1|Name=Gcaud1411.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=554bp
MKCYMLFLILICLKVCSESFGQLTASNVTWRSWILRDSSHAGAWSEMAIA
IESLEKGDSIVAVDRQKLPSSNSVPTIYKVSQSGEVAWSLESKLVSGSPF
AMVINEMFDNAYVVVSSSSSAGSEYESQGQVLRFSGISSNGNSDDIGSKV
NEAVFFTTHSTGGVTKLFDCAINLVNGDVYVTGGTSGSLYGESHGKGDVI
VVRLAPSGDVVKAVQFGGHEDEFGRAIDISTGGTEIVVAAHRGLENGGSE
ALMYRLNAESLEISDGPQMLVEQGATPLFTVNDIAIGPPVQDGSVTTFMT
GKALAIPDRDVDLFMHVFAALKNDVSNVPVYVDGTSNGKGVDQGVAVRAA
SDGHAYCIGSSEAVDGVRRILLLVISPTGQVVLLTSRNEMNNMTRQERPT
DMALAQESNRTVVRYVGYTHDQNGTRPTFGLAMPAIGSVKPFEGFGEIVE
EAATGVGGENKGDENEEEKGMLVMNKNMIIIICSAGVGALALAALLAMIA
VLYRSSQRRGGEVNARQADRSAPGLRENELTFKGDNRGQKAVPQLDTLVT
TNY*

mRNA from alignment at NODE_672_length_19901_cov_4.681121:6445..8106-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1411.t1 ID=Gcaud1411.t1|Name=Gcaud1411.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:6445..8106- (Gracilaria caudata M_176_S67 male)
ATGAAATGCTACATGCTATTTCTTATTCTCATATGTCTAAAGGTCTGTTC
TGAATCATTCGGGCAACTCACTGCAAGTAACGTGACATGGAGATCTTGGA
TTTTGAGAGATTCTTCTCATGCAGGTGCATGGTCTGAAATGGCAATTGCT
ATAGAGAGTCTCGAAAAGGGAGATTCTATAGTTGCAGTAGATCGCCAAAA
GCTTCCGTCTTCTAACTCGGTGCCCACCATTTACAAGGTGAGCCAATCTG
GAGAAGTTGCATGGAGCTTAGAGAGCAAGCTCGTTTCCGGATCTCCTTTT
GCCATGGTGATCAACGAAATGTTTGATAATGCTTACGTAGTGGTGTCCTC
ATCCTCGTCGGCAGGTTCAGAATATGAAAGTCAAGGACAAGTTCTGCGCT
TTTCCGGCATATCAAGTAACGGCAATTCGGATGACATTGGCTCGAAAGTA
AACGAGGCTGTGTTCTTTACCACACATTCTACAGGGGGGGTGACGAAGTT
GTTCGACTGCGCCATTAATTTAGTTAATGGCGATGTGTACGTAACTGGAG
GTACTTCGGGGTCCCTTTACGGAGAATCTCACGGGAAAGGTGACGTAATT
GTCGTTCGTTTGGCACCATCGGGAGATGTTGTGAAAGCTGTGCAGTTTGG
AGGTCACGAAGATGAATTCGGGCGAGCAATTGACATCAGTACAGGTGGGA
CGGAGATTGTGGTTGCTGCTCACAGAGGTTTGGAAAATGGAGGAAGTGAA
GCCTTAATGTATCGATTGAATGCTGAAAGCTTGGAGATCTCTGACGGGCC
TCAAATGTTAGTAGAGCAGGGTGCAACACCGTTGTTCACAGTTAACGACA
TTGCTATCGGACCACCCGTTCAGGATGGATCTGTGACCACATTCATGACC
GGGAAGGCTCTTGCTATACCGGATCGAGATGTCGACCTGTTCATGCATGT
TTTCGCTGCACTAAAGAATGATGTGTCTAATGTTCCAGTCTATGTTGACG
GGACATCGAACGGAAAGGGCGTGGATCAAGGTGTTGCCGTTCGCGCCGCT
TCAGATGGGCACGCCTATTGTATCGGATCTTCAGAAGCTGTCGATGGCGT
TCGTAGGATTCTACTCTTGGTCATATCCCCTACAGGTCAAGTGGTTCTTT
TGACGAGTCGAAACGAGATGAATAATATGACTCGACAGGAGAGACCCACT
GATATGGCTCTAGCACAAGAATCAAACCGAACAGTAGTGCGATACGTTGG
GTATACACACGATCAAAACGGAACCAGACCAACTTTCGGTCTTGCCATGC
CCGCGATTGGATCAGTTAAACCGTTTGAAGGATTTGGAGAAATTGTCGAA
GAAGCAGCCACAGGTGTTGGTGGCGAGAACAAGGGTGATGAAAACGAAGA
AGAAAAGGGAATGCTTGTAATGAATAAGAACATGATCATTATAATTTGCA
GTGCTGGAGTAGGGGCGCTTGCATTGGCAGCCCTTTTGGCGATGATTGCC
GTGCTGTACAGGTCGTCACAACGTCGCGGCGGTGAGGTTAATGCGAGACA
AGCCGATCGCTCTGCTCCTGGACTAAGGGAAAACGAACTGACATTCAAAG
GTGACAACCGGGGGCAAAAAGCTGTCCCGCAGTTGGATACTTTGGTAACA
ACAAACTATTAA

Coding sequence (CDS) from alignment at NODE_672_length_19901_cov_4.681121:6445..8106-

>Gcaud1411.t1 ID=Gcaud1411.t1|Name=Gcaud1411.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1662bp|location=Sequence derived from alignment at NODE_672_length_19901_cov_4.681121:6445..8106- (Gracilaria caudata M_176_S67 male)
ATGAAATGCTACATGCTATTTCTTATTCTCATATGTCTAAAGGTCTGTTC
TGAATCATTCGGGCAACTCACTGCAAGTAACGTGACATGGAGATCTTGGA
TTTTGAGAGATTCTTCTCATGCAGGTGCATGGTCTGAAATGGCAATTGCT
ATAGAGAGTCTCGAAAAGGGAGATTCTATAGTTGCAGTAGATCGCCAAAA
GCTTCCGTCTTCTAACTCGGTGCCCACCATTTACAAGGTGAGCCAATCTG
GAGAAGTTGCATGGAGCTTAGAGAGCAAGCTCGTTTCCGGATCTCCTTTT
GCCATGGTGATCAACGAAATGTTTGATAATGCTTACGTAGTGGTGTCCTC
ATCCTCGTCGGCAGGTTCAGAATATGAAAGTCAAGGACAAGTTCTGCGCT
TTTCCGGCATATCAAGTAACGGCAATTCGGATGACATTGGCTCGAAAGTA
AACGAGGCTGTGTTCTTTACCACACATTCTACAGGGGGGGTGACGAAGTT
GTTCGACTGCGCCATTAATTTAGTTAATGGCGATGTGTACGTAACTGGAG
GTACTTCGGGGTCCCTTTACGGAGAATCTCACGGGAAAGGTGACGTAATT
GTCGTTCGTTTGGCACCATCGGGAGATGTTGTGAAAGCTGTGCAGTTTGG
AGGTCACGAAGATGAATTCGGGCGAGCAATTGACATCAGTACAGGTGGGA
CGGAGATTGTGGTTGCTGCTCACAGAGGTTTGGAAAATGGAGGAAGTGAA
GCCTTAATGTATCGATTGAATGCTGAAAGCTTGGAGATCTCTGACGGGCC
TCAAATGTTAGTAGAGCAGGGTGCAACACCGTTGTTCACAGTTAACGACA
TTGCTATCGGACCACCCGTTCAGGATGGATCTGTGACCACATTCATGACC
GGGAAGGCTCTTGCTATACCGGATCGAGATGTCGACCTGTTCATGCATGT
TTTCGCTGCACTAAAGAATGATGTGTCTAATGTTCCAGTCTATGTTGACG
GGACATCGAACGGAAAGGGCGTGGATCAAGGTGTTGCCGTTCGCGCCGCT
TCAGATGGGCACGCCTATTGTATCGGATCTTCAGAAGCTGTCGATGGCGT
TCGTAGGATTCTACTCTTGGTCATATCCCCTACAGGTCAAGTGGTTCTTT
TGACGAGTCGAAACGAGATGAATAATATGACTCGACAGGAGAGACCCACT
GATATGGCTCTAGCACAAGAATCAAACCGAACAGTAGTGCGATACGTTGG
GTATACACACGATCAAAACGGAACCAGACCAACTTTCGGTCTTGCCATGC
CCGCGATTGGATCAGTTAAACCGTTTGAAGGATTTGGAGAAATTGTCGAA
GAAGCAGCCACAGGTGTTGGTGGCGAGAACAAGGGTGATGAAAACGAAGA
AGAAAAGGGAATGCTTGTAATGAATAAGAACATGATCATTATAATTTGCA
GTGCTGGAGTAGGGGCGCTTGCATTGGCAGCCCTTTTGGCGATGATTGCC
GTGCTGTACAGGTCGTCACAACGTCGCGGCGGTGAGGTTAATGCGAGACA
AGCCGATCGCTCTGCTCCTGGACTAAGGGAAAACGAACTGACATTCAAAG
GTGACAACCGGGGGCAAAAAGCTGTCCCGCAGTTGGATACTTTGGTAACA
ACAAACTATTAA