Gcaud1408.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1408.t1
Unique Name	Gcaud1408.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1768_length_8478_cov_4.188506	contig	NODE_1768_length_8478_cov_4.188506:6056..7924 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S124_155V6.1
PFAMs	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00408
KEGG ko	ko:K01835
KEGG Reaction	R00959,R01057,R08639
KEGG Pathway	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG Module	M00549
Evalue	9.42e-186
EggNOG OGs	COG0033@1\|root,KOG0625@2759\|Eukaryota,37R89@33090\|Viridiplantae,3GETM@35493\|Streptophyta
EC	5.4.2.2
Description	phosphoglucomutase
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1408	Gcaud1408	Gracilaria caudata M_176_S67 male	gene	NODE_1768_length_8478_cov_4.188506 6056..7924 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1	Gcaud1408.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1768_length_8478_cov_4.188506 6056..7924 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1.stop1	Gcaud1408.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1768_length_8478_cov_4.188506 6056..6058 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1.CDS1	Gcaud1408.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1768_length_8478_cov_4.188506 6056..7584 -
Gcaud1408.t1.CDS2	Gcaud1408.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1768_length_8478_cov_4.188506 7731..7780 -
Gcaud1408.t1.CDS3	Gcaud1408.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1768_length_8478_cov_4.188506 7845..7924 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1.exon1	Gcaud1408.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1768_length_8478_cov_4.188506 6056..7584 -
Gcaud1408.t1.exon2	Gcaud1408.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1768_length_8478_cov_4.188506 7731..7780 -
Gcaud1408.t1.exon3	Gcaud1408.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1768_length_8478_cov_4.188506 7845..7924 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1.intron1	Gcaud1408.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1768_length_8478_cov_4.188506 7585..7730 -
Gcaud1408.t1.intron2	Gcaud1408.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1768_length_8478_cov_4.188506 7781..7844 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1408.t1.start1	Gcaud1408.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1768_length_8478_cov_4.188506 7922..7924 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924-
coding sequence from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924-

mRNA sequence

>Gcaud1408.t1 ID=Gcaud1408.t1|Name=Gcaud1408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=553bp
MSSSNCFIAPLPISGFRRLELAGHRTSPQKLHLQFYLRIYQFSRRTLVLG
GDGRFYNKSAAQTILRMAAANGFARVVVGRNALLTTPAVSALIPSRDALG
GIILTASHNPAGPDGDWGIKYNTESGAPALKGLTDSIYEHTQKISQYKLA
DLGSDIDLSTEGVTSFADGKFIVEVINSVDHYLKMLQSIFDFDALTTLVA
RPDFSMRFDAMHASTGEYARVIFGIELGAGFPSVINADPKEDFGGGHPDP
NLTYAAELVDALDPKKNPEAPQFGAASDGDGDRNMILGQGVFVSPADSVA
IIADYATKAIPYFGRQGLKGVARSMPTASALDRVAEEKGIQLYYTPTGWK
YFTNLMDAGKINICGEESFGTSSDHIREKDGIWAVLAWLSILAFENRDTA
IGQFVTVEDILLTHWRKYGRTYNLRHDYEAVESKDAEAFMINLKGMAGGI
IPVLDEVLRVQEFEYKDPVDGSTETNQGIIVEIKSGGRVVFRLSGTGSAG
ATIRIYFELYESASPDMENKDPKVVMEGIVDLVHRLTRIEEFTGRSAPTV
IT*

spliced messenger RNA

>Gcaud1408.t1 ID=Gcaud1408.t1|Name=Gcaud1408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCATCGAATTGTTTTATTGCACCCCTTCCGATTTCGGGCTTCAG
ACGACTGGAACTTGCCGGACATCGAACGAGCCCTCAGAAACTTCATCTTC
AGTTCTATCTGCGGATCTACCAATTCTCACGTCGTACTCTTGTCCTCGGT
GGTGATGGTCGTTTCTATAATAAGAGCGCTGCGCAAACTATTTTGCGCAT
GGCTGCTGCGAATGGCTTTGCACGCGTTGTCGTTGGCCGAAACGCGCTAC
TTACAACTCCGGCTGTGTCTGCATTGATTCCCAGCCGCGACGCGCTTGGT
GGCATCATTCTTACTGCTAGCCACAATCCGGCCGGACCAGATGGGGACTG
GGGAATTAAGTATAACACGGAATCTGGGGCACCCGCTTTGAAGGGGCTAA
CAGATTCCATATATGAACATACTCAGAAGATTTCCCAGTATAAGCTTGCG
GATCTTGGGTCTGATATTGATCTATCGACAGAAGGAGTCACGTCCTTCGC
GGACGGAAAGTTCATTGTCGAAGTCATTAATTCAGTTGACCACTACTTGA
AGATGCTGCAGTCCATATTTGACTTTGATGCTCTGACGACGCTGGTTGCC
CGGCCTGACTTTTCGATGCGGTTTGACGCCATGCACGCATCAACTGGAGA
ATACGCCCGAGTTATATTCGGAATTGAACTTGGAGCGGGGTTTCCATCTG
TTATAAACGCTGATCCAAAAGAGGACTTTGGTGGTGGACACCCAGACCCC
AATCTGACATATGCAGCAGAGCTCGTCGACGCCCTGGACCCGAAGAAGAA
CCCAGAGGCGCCTCAATTCGGCGCTGCGTCAGACGGCGATGGCGATCGGA
ACATGATCCTTGGTCAGGGAGTATTCGTTAGTCCGGCTGATTCCGTTGCT
ATCATAGCTGATTATGCGACGAAGGCGATTCCGTACTTTGGCAGACAAGG
TCTTAAAGGCGTCGCCCGATCCATGCCCACGGCATCGGCGTTGGATAGGG
TTGCGGAAGAAAAAGGTATACAACTGTACTACACCCCCACCGGGTGGAAG
TACTTCACAAATTTAATGGATGCTGGAAAGATCAACATATGTGGAGAGGA
GTCGTTTGGGACAAGCTCTGATCACATACGGGAGAAAGACGGCATATGGG
CTGTTCTGGCATGGTTGAGCATCTTAGCTTTCGAAAACCGTGACACAGCA
ATCGGACAATTCGTTACCGTGGAGGACATACTTCTGACACACTGGAGGAA
GTACGGACGCACGTACAACTTACGACATGATTATGAAGCCGTGGAATCGA
AAGATGCCGAAGCGTTCATGATCAACTTGAAGGGGATGGCAGGTGGGATA
ATTCCGGTCCTTGACGAAGTGCTGCGAGTTCAAGAATTTGAATACAAAGA
TCCGGTTGATGGTTCAACAGAAACAAATCAAGGCATCATTGTAGAAATCA
AGAGCGGTGGTCGTGTTGTGTTCCGATTAAGCGGTACGGGATCGGCAGGT
GCAACGATTCGAATATACTTTGAATTATACGAATCGGCGTCGCCGGATAT
GGAGAACAAGGATCCGAAGGTGGTCATGGAGGGTATCGTGGATCTCGTTC
ACAGATTGACAAGAATCGAGGAATTCACCGGTCGAAGCGCCCCGACTGTG
ATAACATAG

protein sequence of Gcaud1408.t1

>Gcaud1408.t1 ID=Gcaud1408.t1|Name=Gcaud1408.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=553bp
MSSSNCFIAPLPISGFRRLELAGHRTSPQKLHLQFYLRIYQFSRRTLVLG
GDGRFYNKSAAQTILRMAAANGFARVVVGRNALLTTPAVSALIPSRDALG
GIILTASHNPAGPDGDWGIKYNTESGAPALKGLTDSIYEHTQKISQYKLA
DLGSDIDLSTEGVTSFADGKFIVEVINSVDHYLKMLQSIFDFDALTTLVA
RPDFSMRFDAMHASTGEYARVIFGIELGAGFPSVINADPKEDFGGGHPDP
NLTYAAELVDALDPKKNPEAPQFGAASDGDGDRNMILGQGVFVSPADSVA
IIADYATKAIPYFGRQGLKGVARSMPTASALDRVAEEKGIQLYYTPTGWK
YFTNLMDAGKINICGEESFGTSSDHIREKDGIWAVLAWLSILAFENRDTA
IGQFVTVEDILLTHWRKYGRTYNLRHDYEAVESKDAEAFMINLKGMAGGI
IPVLDEVLRVQEFEYKDPVDGSTETNQGIIVEIKSGGRVVFRLSGTGSAG
ATIRIYFELYESASPDMENKDPKVVMEGIVDLVHRLTRIEEFTGRSAPTV
IT*

mRNA from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1408.t1 ID=Gcaud1408.t1|Name=Gcaud1408.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924- (Gracilaria caudata M_176_S67 male)
ATGAGTTCATCGAATTGTTTTATTGCACCCCTTCCGATTTCGGGCTTCAG
ACGACTGGAACTTGCCGGACATCGAACGAGGTTCATGTCATATAAATGGG
TGCGGTTGGTGCGAAGCTCAAAATCCCGTTTAAAAATGTGTCAGCCCTCA
GAAACTTCATCTTCAGTTCTATCTGCGGATCTACCAATTCTCACGTACGA
TACAAAGCCTATACCCGGGCAAACCACTGGAACGAGTGGTATGCGTAAGA
AAACTTCAGTGCTGATGTCTGACCCATCCTTTTTACCCAATTGGGTTCAA
TCTTTGTTTAATGCTCTGGGGGGTCCATCTGTGCTCTCAGGTCGTACTCT
TGTCCTCGGTGGTGATGGTCGTTTCTATAATAAGAGCGCTGCGCAAACTA
TTTTGCGCATGGCTGCTGCGAATGGCTTTGCACGCGTTGTCGTTGGCCGA
AACGCGCTACTTACAACTCCGGCTGTGTCTGCATTGATTCCCAGCCGCGA
CGCGCTTGGTGGCATCATTCTTACTGCTAGCCACAATCCGGCCGGACCAG
ATGGGGACTGGGGAATTAAGTATAACACGGAATCTGGGGCACCCGCTTTG
AAGGGGCTAACAGATTCCATATATGAACATACTCAGAAGATTTCCCAGTA
TAAGCTTGCGGATCTTGGGTCTGATATTGATCTATCGACAGAAGGAGTCA
CGTCCTTCGCGGACGGAAAGTTCATTGTCGAAGTCATTAATTCAGTTGAC
CACTACTTGAAGATGCTGCAGTCCATATTTGACTTTGATGCTCTGACGAC
GCTGGTTGCCCGGCCTGACTTTTCGATGCGGTTTGACGCCATGCACGCAT
CAACTGGAGAATACGCCCGAGTTATATTCGGAATTGAACTTGGAGCGGGG
TTTCCATCTGTTATAAACGCTGATCCAAAAGAGGACTTTGGTGGTGGACA
CCCAGACCCCAATCTGACATATGCAGCAGAGCTCGTCGACGCCCTGGACC
CGAAGAAGAACCCAGAGGCGCCTCAATTCGGCGCTGCGTCAGACGGCGAT
GGCGATCGGAACATGATCCTTGGTCAGGGAGTATTCGTTAGTCCGGCTGA
TTCCGTTGCTATCATAGCTGATTATGCGACGAAGGCGATTCCGTACTTTG
GCAGACAAGGTCTTAAAGGCGTCGCCCGATCCATGCCCACGGCATCGGCG
TTGGATAGGGTTGCGGAAGAAAAAGGTATACAACTGTACTACACCCCCAC
CGGGTGGAAGTACTTCACAAATTTAATGGATGCTGGAAAGATCAACATAT
GTGGAGAGGAGTCGTTTGGGACAAGCTCTGATCACATACGGGAGAAAGAC
GGCATATGGGCTGTTCTGGCATGGTTGAGCATCTTAGCTTTCGAAAACCG
TGACACAGCAATCGGACAATTCGTTACCGTGGAGGACATACTTCTGACAC
ACTGGAGGAAGTACGGACGCACGTACAACTTACGACATGATTATGAAGCC
GTGGAATCGAAAGATGCCGAAGCGTTCATGATCAACTTGAAGGGGATGGC
AGGTGGGATAATTCCGGTCCTTGACGAAGTGCTGCGAGTTCAAGAATTTG
AATACAAAGATCCGGTTGATGGTTCAACAGAAACAAATCAAGGCATCATT
GTAGAAATCAAGAGCGGTGGTCGTGTTGTGTTCCGATTAAGCGGTACGGG
ATCGGCAGGTGCAACGATTCGAATATACTTTGAATTATACGAATCGGCGT
CGCCGGATATGGAGAACAAGGATCCGAAGGTGGTCATGGAGGGTATCGTG
GATCTCGTTCACAGATTGACAAGAATCGAGGAATTCACCGGTCGAAGCGC
CCCGACTGTGATAACATAG

Coding sequence (CDS) from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924-

>Gcaud1408.t1 ID=Gcaud1408.t1|Name=Gcaud1408.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1659bp|location=Sequence derived from alignment at NODE_1768_length_8478_cov_4.188506:6056..7924- (Gracilaria caudata M_176_S67 male)
ATGAGTTCATCGAATTGTTTTATTGCACCCCTTCCGATTTCGGGCTTCAG
ACGACTGGAACTTGCCGGACATCGAACGAGCCCTCAGAAACTTCATCTTC
AGTTCTATCTGCGGATCTACCAATTCTCACGTCGTACTCTTGTCCTCGGT
GGTGATGGTCGTTTCTATAATAAGAGCGCTGCGCAAACTATTTTGCGCAT
GGCTGCTGCGAATGGCTTTGCACGCGTTGTCGTTGGCCGAAACGCGCTAC
TTACAACTCCGGCTGTGTCTGCATTGATTCCCAGCCGCGACGCGCTTGGT
GGCATCATTCTTACTGCTAGCCACAATCCGGCCGGACCAGATGGGGACTG
GGGAATTAAGTATAACACGGAATCTGGGGCACCCGCTTTGAAGGGGCTAA
CAGATTCCATATATGAACATACTCAGAAGATTTCCCAGTATAAGCTTGCG
GATCTTGGGTCTGATATTGATCTATCGACAGAAGGAGTCACGTCCTTCGC
GGACGGAAAGTTCATTGTCGAAGTCATTAATTCAGTTGACCACTACTTGA
AGATGCTGCAGTCCATATTTGACTTTGATGCTCTGACGACGCTGGTTGCC
CGGCCTGACTTTTCGATGCGGTTTGACGCCATGCACGCATCAACTGGAGA
ATACGCCCGAGTTATATTCGGAATTGAACTTGGAGCGGGGTTTCCATCTG
TTATAAACGCTGATCCAAAAGAGGACTTTGGTGGTGGACACCCAGACCCC
AATCTGACATATGCAGCAGAGCTCGTCGACGCCCTGGACCCGAAGAAGAA
CCCAGAGGCGCCTCAATTCGGCGCTGCGTCAGACGGCGATGGCGATCGGA
ACATGATCCTTGGTCAGGGAGTATTCGTTAGTCCGGCTGATTCCGTTGCT
ATCATAGCTGATTATGCGACGAAGGCGATTCCGTACTTTGGCAGACAAGG
TCTTAAAGGCGTCGCCCGATCCATGCCCACGGCATCGGCGTTGGATAGGG
TTGCGGAAGAAAAAGGTATACAACTGTACTACACCCCCACCGGGTGGAAG
TACTTCACAAATTTAATGGATGCTGGAAAGATCAACATATGTGGAGAGGA
GTCGTTTGGGACAAGCTCTGATCACATACGGGAGAAAGACGGCATATGGG
CTGTTCTGGCATGGTTGAGCATCTTAGCTTTCGAAAACCGTGACACAGCA
ATCGGACAATTCGTTACCGTGGAGGACATACTTCTGACACACTGGAGGAA
GTACGGACGCACGTACAACTTACGACATGATTATGAAGCCGTGGAATCGA
AAGATGCCGAAGCGTTCATGATCAACTTGAAGGGGATGGCAGGTGGGATA
ATTCCGGTCCTTGACGAAGTGCTGCGAGTTCAAGAATTTGAATACAAAGA
TCCGGTTGATGGTTCAACAGAAACAAATCAAGGCATCATTGTAGAAATCA
AGAGCGGTGGTCGTGTTGTGTTCCGATTAAGCGGTACGGGATCGGCAGGT
GCAACGATTCGAATATACTTTGAATTATACGAATCGGCGTCGCCGGATAT
GGAGAACAAGGATCCGAAGGTGGTCATGGAGGGTATCGTGGATCTCGTTC
ACAGATTGACAAGAATCGAGGAATTCACCGGTCGAAGCGCCCCGACTGTG
ATAACATAG