Gcaud1402.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1402.t1
Unique Name	Gcaud1402.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1041_length_14768_cov_4.680112	contig	NODE_1041_length_14768_cov_4.680112:10330..11574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5693.XP_809308.1
Preferred name	CYC10
PFAMs	Cyclin
Max annot lvl	5653\|Kinetoplastida
Evalue	5.41e-09
EggNOG OGs	KOG1674@1\|root,KOG1674@2759\|Eukaryota,3XVAN@5653\|Kinetoplastida
Description	Cyclin
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1402	Gcaud1402	Gracilaria caudata M_176_S67 male	gene	NODE_1041_length_14768_cov_4.680112 10330..11574 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1402.t1.start1	Gcaud1402.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1041_length_14768_cov_4.680112 10330..10332 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1402.t1.CDS1	Gcaud1402.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1041_length_14768_cov_4.680112 10330..11574 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1402.t1.exon1	Gcaud1402.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1041_length_14768_cov_4.680112 10330..11574 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1402.t1.stop1	Gcaud1402.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1041_length_14768_cov_4.680112 11572..11574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1402.t1	Gcaud1402.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1041_length_14768_cov_4.680112 10330..11574 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+
coding sequence from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+

mRNA sequence

>Gcaud1402.t1 ID=Gcaud1402.t1|Name=Gcaud1402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=415bp
MTNLRSHANEEAIQSNPNPAPAQLSACNRAALLVTKCVLKSRAQKGENWF
RVAHLSRNGTDLASVMRFIPKPMTSAFQPGEFEKVYKAALECTISPFDSI
LEPIDVDDFVDWVSEGTQYSPSVSILACIYIDRLFAINPELFLRKTNVQR
FFATAYMIAGKFLEDEPVAYSKWMSEAIEIKPADLSFLETLFLTALRHDL
NVTKEQLEEAEISLMTEAIESEWSTEVSKCLRKENILGYHTAVLNKCENM
CRIDLEQKKLQCDQMDDGVTGFDQALQRCPTWRIIRELAEAQLTHDLESE
GCAFPEKPLVMSEFTANGQKRYQKLLALADGNTFSDLKLPPLERVGCPFD
RATKATQWERSEGPLFERFGRIDDNNAMRWAWCVEEMDVQSVRVLHGCVD
EMSAREVEKLMGQR*

spliced messenger RNA

>Gcaud1402.t1 ID=Gcaud1402.t1|Name=Gcaud1402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAATCTACGCAGCCACGCAAATGAAGAGGCTATTCAGAGTAACCC
GAATCCTGCCCCTGCCCAGCTATCTGCATGCAACAGGGCCGCACTCCTTG
TCACAAAATGCGTGCTTAAATCCCGTGCCCAAAAGGGTGAGAATTGGTTC
CGTGTAGCTCACCTTTCGAGAAATGGTACGGACTTGGCCTCCGTAATGCG
TTTCATTCCAAAGCCCATGACGAGCGCTTTTCAACCAGGGGAGTTTGAAA
AAGTTTACAAAGCCGCATTAGAATGCACTATTTCGCCATTTGACTCAATC
CTCGAGCCTATCGACGTAGATGATTTTGTGGACTGGGTCTCAGAAGGTAC
ACAGTATTCTCCATCTGTTTCAATTCTTGCGTGCATCTACATCGATAGAC
TTTTTGCAATTAATCCGGAACTGTTTCTCCGCAAAACAAATGTGCAGCGT
TTCTTTGCGACTGCGTACATGATTGCAGGAAAGTTCTTGGAAGACGAGCC
GGTTGCCTACTCAAAGTGGATGTCAGAAGCGATTGAAATCAAACCAGCAG
ATCTCAGTTTCTTGGAAACGTTATTCCTTACCGCGCTTCGACATGATCTG
AATGTGACCAAAGAACAACTCGAAGAGGCCGAGATTTCGTTAATGACGGA
AGCTATTGAATCCGAATGGTCGACAGAAGTTTCCAAATGTCTTCGAAAAG
AAAACATCCTAGGATACCACACCGCCGTTTTGAACAAATGTGAGAACATG
TGTCGAATCGACCTTGAACAAAAGAAGCTTCAGTGTGACCAAATGGATGA
TGGAGTGACGGGCTTCGACCAAGCGCTTCAAAGATGTCCAACGTGGCGGA
TTATAAGAGAGCTTGCAGAAGCACAGCTGACTCACGATTTGGAGTCTGAG
GGTTGCGCTTTTCCGGAGAAGCCACTTGTAATGAGTGAGTTTACGGCGAA
TGGCCAAAAGCGCTACCAGAAACTACTTGCCTTGGCTGACGGAAATACGT
TCAGCGATTTGAAGCTCCCTCCCCTGGAGAGAGTAGGTTGCCCTTTTGAT
AGAGCCACAAAAGCGACCCAATGGGAACGATCGGAAGGGCCACTGTTTGA
ACGCTTCGGGAGAATAGACGATAACAATGCGATGAGGTGGGCGTGGTGTG
TTGAAGAAATGGACGTTCAGTCAGTTAGAGTTCTTCACGGATGTGTAGAT
GAAATGTCAGCAAGAGAAGTTGAGAAACTTATGGGCCAGAGATGA

protein sequence of Gcaud1402.t1

>Gcaud1402.t1 ID=Gcaud1402.t1|Name=Gcaud1402.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=415bp
MTNLRSHANEEAIQSNPNPAPAQLSACNRAALLVTKCVLKSRAQKGENWF
RVAHLSRNGTDLASVMRFIPKPMTSAFQPGEFEKVYKAALECTISPFDSI
LEPIDVDDFVDWVSEGTQYSPSVSILACIYIDRLFAINPELFLRKTNVQR
FFATAYMIAGKFLEDEPVAYSKWMSEAIEIKPADLSFLETLFLTALRHDL
NVTKEQLEEAEISLMTEAIESEWSTEVSKCLRKENILGYHTAVLNKCENM
CRIDLEQKKLQCDQMDDGVTGFDQALQRCPTWRIIRELAEAQLTHDLESE
GCAFPEKPLVMSEFTANGQKRYQKLLALADGNTFSDLKLPPLERVGCPFD
RATKATQWERSEGPLFERFGRIDDNNAMRWAWCVEEMDVQSVRVLHGCVD
EMSAREVEKLMGQR*

mRNA from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1402.t1 ID=Gcaud1402.t1|Name=Gcaud1402.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+ (Gracilaria caudata M_176_S67 male)
ATGACGAATCTACGCAGCCACGCAAATGAAGAGGCTATTCAGAGTAACCC
GAATCCTGCCCCTGCCCAGCTATCTGCATGCAACAGGGCCGCACTCCTTG
TCACAAAATGCGTGCTTAAATCCCGTGCCCAAAAGGGTGAGAATTGGTTC
CGTGTAGCTCACCTTTCGAGAAATGGTACGGACTTGGCCTCCGTAATGCG
TTTCATTCCAAAGCCCATGACGAGCGCTTTTCAACCAGGGGAGTTTGAAA
AAGTTTACAAAGCCGCATTAGAATGCACTATTTCGCCATTTGACTCAATC
CTCGAGCCTATCGACGTAGATGATTTTGTGGACTGGGTCTCAGAAGGTAC
ACAGTATTCTCCATCTGTTTCAATTCTTGCGTGCATCTACATCGATAGAC
TTTTTGCAATTAATCCGGAACTGTTTCTCCGCAAAACAAATGTGCAGCGT
TTCTTTGCGACTGCGTACATGATTGCAGGAAAGTTCTTGGAAGACGAGCC
GGTTGCCTACTCAAAGTGGATGTCAGAAGCGATTGAAATCAAACCAGCAG
ATCTCAGTTTCTTGGAAACGTTATTCCTTACCGCGCTTCGACATGATCTG
AATGTGACCAAAGAACAACTCGAAGAGGCCGAGATTTCGTTAATGACGGA
AGCTATTGAATCCGAATGGTCGACAGAAGTTTCCAAATGTCTTCGAAAAG
AAAACATCCTAGGATACCACACCGCCGTTTTGAACAAATGTGAGAACATG
TGTCGAATCGACCTTGAACAAAAGAAGCTTCAGTGTGACCAAATGGATGA
TGGAGTGACGGGCTTCGACCAAGCGCTTCAAAGATGTCCAACGTGGCGGA
TTATAAGAGAGCTTGCAGAAGCACAGCTGACTCACGATTTGGAGTCTGAG
GGTTGCGCTTTTCCGGAGAAGCCACTTGTAATGAGTGAGTTTACGGCGAA
TGGCCAAAAGCGCTACCAGAAACTACTTGCCTTGGCTGACGGAAATACGT
TCAGCGATTTGAAGCTCCCTCCCCTGGAGAGAGTAGGTTGCCCTTTTGAT
AGAGCCACAAAAGCGACCCAATGGGAACGATCGGAAGGGCCACTGTTTGA
ACGCTTCGGGAGAATAGACGATAACAATGCGATGAGGTGGGCGTGGTGTG
TTGAAGAAATGGACGTTCAGTCAGTTAGAGTTCTTCACGGATGTGTAGAT
GAAATGTCAGCAAGAGAAGTTGAGAAACTTATGGGCCAGAGATGA

Coding sequence (CDS) from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+

>Gcaud1402.t1 ID=Gcaud1402.t1|Name=Gcaud1402.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1245bp|location=Sequence derived from alignment at NODE_1041_length_14768_cov_4.680112:10330..11574+ (Gracilaria caudata M_176_S67 male)
ATGACGAATCTACGCAGCCACGCAAATGAAGAGGCTATTCAGAGTAACCC
GAATCCTGCCCCTGCCCAGCTATCTGCATGCAACAGGGCCGCACTCCTTG
TCACAAAATGCGTGCTTAAATCCCGTGCCCAAAAGGGTGAGAATTGGTTC
CGTGTAGCTCACCTTTCGAGAAATGGTACGGACTTGGCCTCCGTAATGCG
TTTCATTCCAAAGCCCATGACGAGCGCTTTTCAACCAGGGGAGTTTGAAA
AAGTTTACAAAGCCGCATTAGAATGCACTATTTCGCCATTTGACTCAATC
CTCGAGCCTATCGACGTAGATGATTTTGTGGACTGGGTCTCAGAAGGTAC
ACAGTATTCTCCATCTGTTTCAATTCTTGCGTGCATCTACATCGATAGAC
TTTTTGCAATTAATCCGGAACTGTTTCTCCGCAAAACAAATGTGCAGCGT
TTCTTTGCGACTGCGTACATGATTGCAGGAAAGTTCTTGGAAGACGAGCC
GGTTGCCTACTCAAAGTGGATGTCAGAAGCGATTGAAATCAAACCAGCAG
ATCTCAGTTTCTTGGAAACGTTATTCCTTACCGCGCTTCGACATGATCTG
AATGTGACCAAAGAACAACTCGAAGAGGCCGAGATTTCGTTAATGACGGA
AGCTATTGAATCCGAATGGTCGACAGAAGTTTCCAAATGTCTTCGAAAAG
AAAACATCCTAGGATACCACACCGCCGTTTTGAACAAATGTGAGAACATG
TGTCGAATCGACCTTGAACAAAAGAAGCTTCAGTGTGACCAAATGGATGA
TGGAGTGACGGGCTTCGACCAAGCGCTTCAAAGATGTCCAACGTGGCGGA
TTATAAGAGAGCTTGCAGAAGCACAGCTGACTCACGATTTGGAGTCTGAG
GGTTGCGCTTTTCCGGAGAAGCCACTTGTAATGAGTGAGTTTACGGCGAA
TGGCCAAAAGCGCTACCAGAAACTACTTGCCTTGGCTGACGGAAATACGT
TCAGCGATTTGAAGCTCCCTCCCCTGGAGAGAGTAGGTTGCCCTTTTGAT
AGAGCCACAAAAGCGACCCAATGGGAACGATCGGAAGGGCCACTGTTTGA
ACGCTTCGGGAGAATAGACGATAACAATGCGATGAGGTGGGCGTGGTGTG
TTGAAGAAATGGACGTTCAGTCAGTTAGAGTTCTTCACGGATGTGTAGAT
GAAATGTCAGCAAGAGAAGTTGAGAAACTTATGGGCCAGAGATGA