Gcaud1393.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1393.t1
Unique Name	Gcaud1393.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	291

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2007_length_7228_cov_3.984027	contig	NODE_2007_length_7228_cov_3.984027:4142..5014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010674314.1
PFAMs	Rxt3
Max annot lvl	35493\|Streptophyta
Evalue	1.52e-17
EggNOG OGs	KOG4843@1\|root,KOG4843@2759\|Eukaryota,37KHR@33090\|Viridiplantae,3GDXF@35493\|Streptophyta
Description	Histone deacetylation protein Rxt3
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1393	Gcaud1393	Gracilaria caudata M_176_S67 male	gene	NODE_2007_length_7228_cov_3.984027 4142..5014 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1393.t1.stop1	Gcaud1393.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2007_length_7228_cov_3.984027 4142..4144 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1393.t1.CDS1	Gcaud1393.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2007_length_7228_cov_3.984027 4142..5014 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1393.t1.exon1	Gcaud1393.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2007_length_7228_cov_3.984027 4142..5014 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1393.t1.start1	Gcaud1393.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2007_length_7228_cov_3.984027 5012..5014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1393.t1	Gcaud1393.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2007_length_7228_cov_3.984027 4142..5014 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014-
coding sequence from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014-

mRNA sequence

>Gcaud1393.t1 ID=Gcaud1393.t1|Name=Gcaud1393.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=291bp
MDVEKLLRARCERVVTVHIPSDHFTQSNAPVRHRFVWGTDAYTDDSDLVC
VLVHTGFATLESKPHFEYLTAKLKLQRHVPRCSPPFKATERYGLSSRAWS
SSYNGARMSIVSVQAVEPHRKYFKSPRAPVFPTRSLPGIVSSARAPASKG
AKSTSARKLATSICFDMLNKPCQTYNINDVTALIDDARNPSTRLQREVLY
VENNMHRYEICRVANSDNVVRFARVKHTALTQQLLAELGLRETLSCPMRN
ADLIDVQQIPWNALDWHIHGVTVKGVQYPLTKLSYQKLRQ*

spliced messenger RNA

>Gcaud1393.t1 ID=Gcaud1393.t1|Name=Gcaud1393.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=873bp|location=Sequence derived from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGGAAAAGCTGTTGAGAGCGCGCTGTGAACGAGTGGTCACAGT
GCACATCCCCTCAGATCACTTCACCCAGTCCAATGCACCCGTTCGCCACC
GCTTTGTGTGGGGAACCGATGCTTACACAGACGACTCGGACCTGGTGTGC
GTGTTGGTGCACACCGGTTTTGCCACCTTGGAATCAAAACCACACTTCGA
GTACCTCACGGCCAAACTCAAACTGCAACGCCACGTGCCGCGCTGCTCGC
CGCCTTTCAAAGCCACCGAGCGATACGGCTTGAGCTCCAGAGCGTGGAGT
TCATCGTACAACGGCGCTCGAATGTCCATTGTGTCTGTTCAGGCCGTTGA
GCCACACCGCAAGTATTTCAAGAGCCCGCGTGCTCCCGTGTTCCCGACCA
GGTCTTTGCCAGGCATTGTATCATCCGCTCGTGCGCCAGCCTCCAAAGGC
GCCAAGTCCACTTCTGCTCGCAAACTGGCCACTTCCATCTGCTTCGACAT
GCTCAACAAGCCATGTCAGACGTACAATATCAACGATGTCACAGCTCTGA
TTGACGACGCGCGAAATCCGAGCACTCGCTTGCAACGGGAGGTATTATAC
GTAGAAAACAATATGCATCGCTACGAGATTTGTCGCGTCGCAAATAGCGA
CAACGTCGTGCGCTTTGCGCGTGTCAAGCACACCGCCCTCACACAACAAC
TGCTCGCTGAGCTGGGCCTTCGCGAAACGCTCTCGTGCCCAATGCGCAAC
GCGGATTTGATAGATGTGCAACAGATCCCTTGGAATGCGCTTGACTGGCA
TATCCACGGGGTAACCGTTAAAGGTGTGCAATATCCACTCACCAAGTTAT
CATATCAGAAGCTCCGCCAATGA

protein sequence of Gcaud1393.t1

>Gcaud1393.t1 ID=Gcaud1393.t1|Name=Gcaud1393.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=291bp
MDVEKLLRARCERVVTVHIPSDHFTQSNAPVRHRFVWGTDAYTDDSDLVC
VLVHTGFATLESKPHFEYLTAKLKLQRHVPRCSPPFKATERYGLSSRAWS
SSYNGARMSIVSVQAVEPHRKYFKSPRAPVFPTRSLPGIVSSARAPASKG
AKSTSARKLATSICFDMLNKPCQTYNINDVTALIDDARNPSTRLQREVLY
VENNMHRYEICRVANSDNVVRFARVKHTALTQQLLAELGLRETLSCPMRN
ADLIDVQQIPWNALDWHIHGVTVKGVQYPLTKLSYQKLRQ*

mRNA from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1393.t1 ID=Gcaud1393.t1|Name=Gcaud1393.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=873bp|location=Sequence derived from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014- (Gracilaria caudata M_176_S67 male)
ATGGACGTGGAAAAGCTGTTGAGAGCGCGCTGTGAACGAGTGGTCACAGT
GCACATCCCCTCAGATCACTTCACCCAGTCCAATGCACCCGTTCGCCACC
GCTTTGTGTGGGGAACCGATGCTTACACAGACGACTCGGACCTGGTGTGC
GTGTTGGTGCACACCGGTTTTGCCACCTTGGAATCAAAACCACACTTCGA
GTACCTCACGGCCAAACTCAAACTGCAACGCCACGTGCCGCGCTGCTCGC
CGCCTTTCAAAGCCACCGAGCGATACGGCTTGAGCTCCAGAGCGTGGAGT
TCATCGTACAACGGCGCTCGAATGTCCATTGTGTCTGTTCAGGCCGTTGA
GCCACACCGCAAGTATTTCAAGAGCCCGCGTGCTCCCGTGTTCCCGACCA
GGTCTTTGCCAGGCATTGTATCATCCGCTCGTGCGCCAGCCTCCAAAGGC
GCCAAGTCCACTTCTGCTCGCAAACTGGCCACTTCCATCTGCTTCGACAT
GCTCAACAAGCCATGTCAGACGTACAATATCAACGATGTCACAGCTCTGA
TTGACGACGCGCGAAATCCGAGCACTCGCTTGCAACGGGAGGTATTATAC
GTAGAAAACAATATGCATCGCTACGAGATTTGTCGCGTCGCAAATAGCGA
CAACGTCGTGCGCTTTGCGCGTGTCAAGCACACCGCCCTCACACAACAAC
TGCTCGCTGAGCTGGGCCTTCGCGAAACGCTCTCGTGCCCAATGCGCAAC
GCGGATTTGATAGATGTGCAACAGATCCCTTGGAATGCGCTTGACTGGCA
TATCCACGGGGTAACCGTTAAAGGTGTGCAATATCCACTCACCAAGTTAT
CATATCAGAAGCTCCGCCAATGA

Coding sequence (CDS) from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014-

>Gcaud1393.t1 ID=Gcaud1393.t1|Name=Gcaud1393.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=873bp|location=Sequence derived from alignment at NODE_2007_length_7228_cov_3.984027:4142..5014- (Gracilaria caudata M_176_S67 male)
ATGGACGTGGAAAAGCTGTTGAGAGCGCGCTGTGAACGAGTGGTCACAGT
GCACATCCCCTCAGATCACTTCACCCAGTCCAATGCACCCGTTCGCCACC
GCTTTGTGTGGGGAACCGATGCTTACACAGACGACTCGGACCTGGTGTGC
GTGTTGGTGCACACCGGTTTTGCCACCTTGGAATCAAAACCACACTTCGA
GTACCTCACGGCCAAACTCAAACTGCAACGCCACGTGCCGCGCTGCTCGC
CGCCTTTCAAAGCCACCGAGCGATACGGCTTGAGCTCCAGAGCGTGGAGT
TCATCGTACAACGGCGCTCGAATGTCCATTGTGTCTGTTCAGGCCGTTGA
GCCACACCGCAAGTATTTCAAGAGCCCGCGTGCTCCCGTGTTCCCGACCA
GGTCTTTGCCAGGCATTGTATCATCCGCTCGTGCGCCAGCCTCCAAAGGC
GCCAAGTCCACTTCTGCTCGCAAACTGGCCACTTCCATCTGCTTCGACAT
GCTCAACAAGCCATGTCAGACGTACAATATCAACGATGTCACAGCTCTGA
TTGACGACGCGCGAAATCCGAGCACTCGCTTGCAACGGGAGGTATTATAC
GTAGAAAACAATATGCATCGCTACGAGATTTGTCGCGTCGCAAATAGCGA
CAACGTCGTGCGCTTTGCGCGTGTCAAGCACACCGCCCTCACACAACAAC
TGCTCGCTGAGCTGGGCCTTCGCGAAACGCTCTCGTGCCCAATGCGCAAC
GCGGATTTGATAGATGTGCAACAGATCCCTTGGAATGCGCTTGACTGGCA
TATCCACGGGGTAACCGTTAAAGGTGTGCAATATCCACTCACCAAGTTAT
CATATCAGAAGCTCCGCCAATGA