Gcaud1391.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1391.t1
Unique Name	Gcaud1391.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	443

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1410_length_10866_cov_4.688074	contig	NODE_1410_length_10866_cov_4.688074:9050..10512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_11515T0
Max annot lvl	2759\|Eukaryota
Evalue	3.19e-15
EggNOG OGs	2E99P@1\|root,2SFNP@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1391	Gcaud1391	Gracilaria caudata M_176_S67 male	gene	NODE_1410_length_10866_cov_4.688074 9050..10512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1.stop1	Gcaud1391.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1410_length_10866_cov_4.688074 9050..9052 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1.CDS1	Gcaud1391.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1410_length_10866_cov_4.688074 9050..9705 -
Gcaud1391.t1.CDS2	Gcaud1391.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1410_length_10866_cov_4.688074 9840..10512 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1.exon1	Gcaud1391.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1410_length_10866_cov_4.688074 9050..9705 -
Gcaud1391.t1.exon2	Gcaud1391.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1410_length_10866_cov_4.688074 9840..10512 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1.intron1	Gcaud1391.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1410_length_10866_cov_4.688074 9706..9839 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1.start1	Gcaud1391.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1410_length_10866_cov_4.688074 10510..10512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1391.t1	Gcaud1391.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1410_length_10866_cov_4.688074 9050..10512 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512-
coding sequence from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512-

mRNA sequence

>Gcaud1391.t1 ID=Gcaud1391.t1|Name=Gcaud1391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=443bp
MVKGFALRRIRRLAPLLLFLNIVTFKLVSSAEPEPSTLQKLVYRWLHWGA
NWGHASHPSAPHPRDSIAQTSSSTGALPEPPPPYVIGAATRNASLSANMP
YPSVMMHRAEVDLISSYLTSEDVYVEFGSGGSSLAFPPLVKRAYTIDHDC
GVSAALQKVMSERNVHPAEGGTKFLCVNIRPGFRGWGTISRFEHANYEQF
REYVDLIDAIPEKRFDKVLIDGRARLACALRILPYLHDDSLVFIHDFYTR
MGHYSQVLQYYIEVARLLAHRNNDPTQGPIDEPQGLIVLRRKPDLVLPVS
TADIDAMYERINWRSPFPEPLTSLFRRIAYSIGLFFDWSRWKRAYNPSHL
LSFVVHDLLILAALYGIGSFALQNYRIYQGNSNSDLKATKRPRDRSTNSD
GSEIVPIAPRPNPNIKFMETEGMKAANARRKRASAVALKASA*

spliced messenger RNA

>Gcaud1391.t1 ID=Gcaud1391.t1|Name=Gcaud1391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1329bp|location=Sequence derived from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAAGGCTTCGCTCTGCGCAGGATTCGGCGATTAGCACCGTTGCT
GCTATTCTTGAACATAGTTACTTTCAAGCTCGTATCGTCTGCCGAACCAG
AGCCGTCAACTCTGCAGAAACTTGTATACCGCTGGCTTCATTGGGGCGCA
AATTGGGGTCATGCCTCCCATCCTTCTGCTCCGCATCCGCGCGACAGTAT
CGCTCAGACATCATCATCCACCGGAGCTCTGCCTGAACCGCCCCCGCCTT
ATGTCATCGGAGCAGCCACTAGAAATGCCTCACTATCTGCGAACATGCCA
TACCCGTCAGTTATGATGCACCGAGCAGAAGTTGATCTTATCTCCTCATA
TCTTACGAGTGAAGATGTATACGTTGAGTTTGGTTCAGGTGGTTCATCGC
TTGCATTCCCGCCTCTCGTAAAACGTGCCTATACCATTGATCACGACTGT
GGAGTTTCTGCTGCTCTCCAGAAAGTGATGTCAGAGCGCAACGTTCATCC
TGCAGAAGGAGGGACCAAATTTCTATGCGTCAATATTCGTCCTGGCTTCC
GTGGTTGGGGAACAATATCGCGATTTGAACATGCGAACTATGAACAGTTC
AGGGAATATGTTGATCTCATCGATGCCATTCCTGAAAAGAGGTTCGATAA
AGTGCTAATCGACGGTCGTGCTCGCCTCGCATGCGCCCTAAGAATCCTCC
CATACCTACATGATGACTCCCTCGTATTCATCCACGATTTCTATACCCGA
ATGGGTCACTATTCTCAAGTACTACAGTATTATATCGAGGTCGCGCGTTT
ACTTGCTCACCGAAATAATGATCCCACCCAGGGCCCCATTGATGAACCTC
AAGGGCTCATTGTATTACGTAGAAAACCTGACTTGGTTCTTCCCGTTTCT
ACCGCTGATATTGATGCGATGTATGAACGGATCAATTGGAGGAGCCCATT
TCCAGAACCACTAACATCCCTGTTTCGACGGATTGCATATAGCATCGGTT
TATTCTTCGACTGGAGCCGATGGAAACGCGCCTATAACCCATCACATTTG
CTCTCTTTTGTGGTGCATGATTTGCTTATACTTGCTGCTCTGTACGGAAT
CGGATCTTTCGCGCTCCAGAACTACAGAATATATCAAGGTAACAGCAATT
CTGATTTGAAAGCAACGAAACGACCACGCGACCGCTCAACTAATTCCGAT
GGCTCTGAAATTGTGCCAATAGCTCCTCGGCCGAATCCAAACATCAAGTT
CATGGAGACGGAAGGTATGAAAGCAGCCAATGCGAGACGAAAACGAGCCA
GCGCCGTTGCCTTAAAGGCTTCGGCGTAG

protein sequence of Gcaud1391.t1

>Gcaud1391.t1 ID=Gcaud1391.t1|Name=Gcaud1391.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=443bp
MVKGFALRRIRRLAPLLLFLNIVTFKLVSSAEPEPSTLQKLVYRWLHWGA
NWGHASHPSAPHPRDSIAQTSSSTGALPEPPPPYVIGAATRNASLSANMP
YPSVMMHRAEVDLISSYLTSEDVYVEFGSGGSSLAFPPLVKRAYTIDHDC
GVSAALQKVMSERNVHPAEGGTKFLCVNIRPGFRGWGTISRFEHANYEQF
REYVDLIDAIPEKRFDKVLIDGRARLACALRILPYLHDDSLVFIHDFYTR
MGHYSQVLQYYIEVARLLAHRNNDPTQGPIDEPQGLIVLRRKPDLVLPVS
TADIDAMYERINWRSPFPEPLTSLFRRIAYSIGLFFDWSRWKRAYNPSHL
LSFVVHDLLILAALYGIGSFALQNYRIYQGNSNSDLKATKRPRDRSTNSD
GSEIVPIAPRPNPNIKFMETEGMKAANARRKRASAVALKASA*

mRNA from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1391.t1 ID=Gcaud1391.t1|Name=Gcaud1391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1463bp|location=Sequence derived from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512- (Gracilaria caudata M_176_S67 male)
ATGGTCAAAGGCTTCGCTCTGCGCAGGATTCGGCGATTAGCACCGTTGCT
GCTATTCTTGAACATAGTTACTTTCAAGCTCGTATCGTCTGCCGAACCAG
AGCCGTCAACTCTGCAGAAACTTGTATACCGCTGGCTTCATTGGGGCGCA
AATTGGGGTCATGCCTCCCATCCTTCTGCTCCGCATCCGCGCGACAGTAT
CGCTCAGACATCATCATCCACCGGAGCTCTGCCTGAACCGCCCCCGCCTT
ATGTCATCGGAGCAGCCACTAGAAATGCCTCACTATCTGCGAACATGCCA
TACCCGTCAGTTATGATGCACCGAGCAGAAGTTGATCTTATCTCCTCATA
TCTTACGAGTGAAGATGTATACGTTGAGTTTGGTTCAGGTGGTTCATCGC
TTGCATTCCCGCCTCTCGTAAAACGTGCCTATACCATTGATCACGACTGT
GGAGTTTCTGCTGCTCTCCAGAAAGTGATGTCAGAGCGCAACGTTCATCC
TGCAGAAGGAGGGACCAAATTTCTATGCGTCAATATTCGTCCTGGCTTCC
GTGGTTGGGGAACAATATCGCGATTTGAACATGCGAACTATGAACAGTTC
AGGGAATATGTTGATCTCATCGATGCCATTCCTGAAAAGAGGTTCGATAA
AGTGCTAATCGACGGTCGTGCTCGTAAGTTTGCATCTGGTCTCCGCGTCT
GTGACTCTCTTTCCTTGCGTTCTCTTCATTTCCACATTGTTACTGACGGA
CACGTTTGTACGCTTGTTCTTGCCTCTGCACAACTCTGCTCCGGAATGAT
TCGGAAGGCCTCGCATGCGCCCTAAGAATCCTCCCATACCTACATGATGA
CTCCCTCGTATTCATCCACGATTTCTATACCCGAATGGGTCACTATTCTC
AAGTACTACAGTATTATATCGAGGTCGCGCGTTTACTTGCTCACCGAAAT
AATGATCCCACCCAGGGCCCCATTGATGAACCTCAAGGGCTCATTGTATT
ACGTAGAAAACCTGACTTGGTTCTTCCCGTTTCTACCGCTGATATTGATG
CGATGTATGAACGGATCAATTGGAGGAGCCCATTTCCAGAACCACTAACA
TCCCTGTTTCGACGGATTGCATATAGCATCGGTTTATTCTTCGACTGGAG
CCGATGGAAACGCGCCTATAACCCATCACATTTGCTCTCTTTTGTGGTGC
ATGATTTGCTTATACTTGCTGCTCTGTACGGAATCGGATCTTTCGCGCTC
CAGAACTACAGAATATATCAAGGTAACAGCAATTCTGATTTGAAAGCAAC
GAAACGACCACGCGACCGCTCAACTAATTCCGATGGCTCTGAAATTGTGC
CAATAGCTCCTCGGCCGAATCCAAACATCAAGTTCATGGAGACGGAAGGT
ATGAAAGCAGCCAATGCGAGACGAAAACGAGCCAGCGCCGTTGCCTTAAA
GGCTTCGGCGTAG

Coding sequence (CDS) from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512-

>Gcaud1391.t1 ID=Gcaud1391.t1|Name=Gcaud1391.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1329bp|location=Sequence derived from alignment at NODE_1410_length_10866_cov_4.688074:9050..10512- (Gracilaria caudata M_176_S67 male)
ATGGTCAAAGGCTTCGCTCTGCGCAGGATTCGGCGATTAGCACCGTTGCT
GCTATTCTTGAACATAGTTACTTTCAAGCTCGTATCGTCTGCCGAACCAG
AGCCGTCAACTCTGCAGAAACTTGTATACCGCTGGCTTCATTGGGGCGCA
AATTGGGGTCATGCCTCCCATCCTTCTGCTCCGCATCCGCGCGACAGTAT
CGCTCAGACATCATCATCCACCGGAGCTCTGCCTGAACCGCCCCCGCCTT
ATGTCATCGGAGCAGCCACTAGAAATGCCTCACTATCTGCGAACATGCCA
TACCCGTCAGTTATGATGCACCGAGCAGAAGTTGATCTTATCTCCTCATA
TCTTACGAGTGAAGATGTATACGTTGAGTTTGGTTCAGGTGGTTCATCGC
TTGCATTCCCGCCTCTCGTAAAACGTGCCTATACCATTGATCACGACTGT
GGAGTTTCTGCTGCTCTCCAGAAAGTGATGTCAGAGCGCAACGTTCATCC
TGCAGAAGGAGGGACCAAATTTCTATGCGTCAATATTCGTCCTGGCTTCC
GTGGTTGGGGAACAATATCGCGATTTGAACATGCGAACTATGAACAGTTC
AGGGAATATGTTGATCTCATCGATGCCATTCCTGAAAAGAGGTTCGATAA
AGTGCTAATCGACGGTCGTGCTCGCCTCGCATGCGCCCTAAGAATCCTCC
CATACCTACATGATGACTCCCTCGTATTCATCCACGATTTCTATACCCGA
ATGGGTCACTATTCTCAAGTACTACAGTATTATATCGAGGTCGCGCGTTT
ACTTGCTCACCGAAATAATGATCCCACCCAGGGCCCCATTGATGAACCTC
AAGGGCTCATTGTATTACGTAGAAAACCTGACTTGGTTCTTCCCGTTTCT
ACCGCTGATATTGATGCGATGTATGAACGGATCAATTGGAGGAGCCCATT
TCCAGAACCACTAACATCCCTGTTTCGACGGATTGCATATAGCATCGGTT
TATTCTTCGACTGGAGCCGATGGAAACGCGCCTATAACCCATCACATTTG
CTCTCTTTTGTGGTGCATGATTTGCTTATACTTGCTGCTCTGTACGGAAT
CGGATCTTTCGCGCTCCAGAACTACAGAATATATCAAGGTAACAGCAATT
CTGATTTGAAAGCAACGAAACGACCACGCGACCGCTCAACTAATTCCGAT
GGCTCTGAAATTGTGCCAATAGCTCCTCGGCCGAATCCAAACATCAAGTT
CATGGAGACGGAAGGTATGAAAGCAGCCAATGCGAGACGAAAACGAGCCA
GCGCCGTTGCCTTAAAGGCTTCGGCGTAG