Gcaud1382.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1382.t1
Unique NameGcaud1382.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_498_length_23634_cov_4.475301contigNODE_498_length_23634_cov_4.475301:16468..17909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707627.1
Preferred nameIDP1
PFAMsIso_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
GOsGO:0000287,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004448,GO:0004450,GO:0005102,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006102,GO:0006103,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006740,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009060,GO:0009062,GO:0009064,GO:0009084,GO:0009117,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0012505,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019395,GO:0019637,GO:0019752,GO:0030054,GO:0030141,GO:0030258,GO:0031410,GO:0031907,GO:0031974,GO:0031976,GO:0031982,GO:0031983,GO:0031984,GO:0032787,GO:0032940,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0034641,GO:0034774,GO:0036230,GO:0042119,GO:0042221,GO:0042579,GO:0042645,GO:0042742,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043436,GO:0043574,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045333,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046983,GO:0048046,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051990,GO:0055044,GO:0055086,GO:0055114,GO:0060205,GO:0070013,GO:0070727,GO:0070820,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072329,GO:0072350,GO:0072524,GO:0072594,GO:0072662,GO:0072663,GO:0097708,GO:0098542,GO:0099503,GO:0101002,GO:1901360,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1904724,GO:1904813
Evalue1.6e-178
EggNOG OGsCOG0538@1|root,KOG1526@2759|Eukaryota
EC1.1.1.42
Descriptionisocitrate dehydrogenase (NADP ) activity
COG categoryC
BiGG ReactioniMM904.YLR174W,iND750.YLR174W
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1382Gcaud1382Gracilaria caudata M_176_S67 malegeneNODE_498_length_23634_cov_4.475301 16468..17909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1Gcaud1382.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_498_length_23634_cov_4.475301 16468..17909 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1.stop1Gcaud1382.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_498_length_23634_cov_4.475301 16468..16470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1.CDS1Gcaud1382.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_498_length_23634_cov_4.475301 16468..16892 -
Gcaud1382.t1.CDS2Gcaud1382.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_498_length_23634_cov_4.475301 16991..17909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1.exon1Gcaud1382.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_498_length_23634_cov_4.475301 16468..16892 -
Gcaud1382.t1.exon2Gcaud1382.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_498_length_23634_cov_4.475301 16991..17909 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1.intron1Gcaud1382.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_498_length_23634_cov_4.475301 16893..16990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1382.t1.start1Gcaud1382.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_498_length_23634_cov_4.475301 17907..17909 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1382.t1 ID=Gcaud1382.t1|Name=Gcaud1382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MMRPLLHGAALAARSLSTAAVSSKLPSRSFAAAATAVTKIKVENPVVSLD
GDEMTRMIWATIKDRLITPYLDIPIIEYDLGIINRDKTDDRVTVEAAHAI
LEHNVGIKCAGITPDEARVDEFGLKRMYKSPNGTIRAILNGTVFREPIIA
QNIPRLVTAWNKPIIIARHAYADQYKSVDMRIPPGKGTLKMVYEHENGRV
DEHVVHEFEDAGVGLCMYNTDESIYGFAKATFSYARMRGLPVILASKNTI
LKQYDGRFLQIFAEVHADYPDVPYEHRLIDDFVAYMIKSDGGYVAALKNY
DGDVISDISAQGFGSLGLMTSTLVCPHDNGKTIETEAAHGTVTRHYRQHQ
AGKETSTNPIASIFAWTRGLEHRGKLDHNEDLVNFATRVEKACIDTVESG
TMTKDLAICIHGNKGTDRQFWVTTNEYIDAVVDRLANEPVVDHAEAS*
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spliced messenger RNA

>Gcaud1382.t1 ID=Gcaud1382.t1|Name=Gcaud1382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:16468..17909- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGTCCCTTGCTCCATGGTGCTGCCCTTGCGGCTAGGTCGTTGTC
TACCGCTGCTGTTTCGAGCAAGCTACCCTCTCGCTCGTTTGCAGCAGCAG
CAACTGCCGTCACGAAGATAAAGGTTGAGAACCCAGTTGTTTCCCTCGAT
GGAGATGAGATGACTCGCATGATCTGGGCGACTATCAAGGATCGTCTCAT
CACCCCGTATCTGGATATTCCAATCATAGAGTATGATCTCGGCATCATCA
ACAGGGACAAAACAGATGATCGAGTCACAGTCGAGGCCGCTCATGCCATT
CTGGAGCATAACGTTGGCATTAAATGTGCTGGTATCACTCCAGATGAGGC
TCGCGTTGACGAGTTTGGTCTTAAACGCATGTACAAGTCGCCGAACGGTA
CCATTCGAGCTATTCTTAATGGTACCGTGTTTAGAGAGCCTATCATTGCT
CAAAACATTCCCCGACTTGTTACGGCATGGAACAAACCCATCATCATCGC
CCGCCATGCGTATGCGGACCAGTACAAATCCGTCGATATGCGCATTCCGC
CTGGGAAGGGTACGCTCAAGATGGTGTACGAACATGAAAATGGTCGTGTT
GATGAACATGTCGTGCATGAATTCGAAGATGCGGGAGTCGGGCTGTGTAT
GTATAATACTGATGAAAGCATTTATGGATTTGCCAAGGCTACCTTTTCAT
ATGCTCGGATGAGAGGTTTGCCTGTTATTCTGGCCAGTAAGAATACCATT
CTCAAACAGTATGACGGACGGTTTTTGCAGATCTTTGCCGAAGTTCATGC
CGATTATCCAGATGTTCCTTACGAGCACCGTCTTATTGACGACTTTGTTG
CTTATATGATCAAGTCTGACGGCGGCTATGTCGCTGCTCTCAAGAACTAT
GACGGCGATGTTATTTCTGACATCAGCGCACAAGGTTTCGGAAGCTTGGG
TCTTATGACCTCAACTCTGGTGTGCCCCCATGACAACGGCAAAACTATTG
AGACAGAAGCCGCGCACGGTACTGTAACTCGTCATTACCGTCAACATCAG
GCTGGAAAGGAAACTAGTACGAATCCCATTGCATCCATTTTTGCCTGGAC
ACGTGGTTTGGAACATCGTGGAAAACTTGATCACAATGAAGATCTCGTCA
ATTTTGCAACCCGAGTTGAGAAGGCTTGCATTGATACGGTCGAAAGCGGC
ACAATGACCAAAGATCTTGCCATTTGTATTCATGGGAACAAAGGTACGGA
TCGTCAGTTTTGGGTTACCACCAATGAGTACATTGATGCAGTTGTTGATC
GTCTTGCGAATGAGCCGGTTGTTGATCATGCCGAAGCGTCGTAA
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protein sequence of Gcaud1382.t1

>Gcaud1382.t1 ID=Gcaud1382.t1|Name=Gcaud1382.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MMRPLLHGAALAARSLSTAAVSSKLPSRSFAAAATAVTKIKVENPVVSLD
GDEMTRMIWATIKDRLITPYLDIPIIEYDLGIINRDKTDDRVTVEAAHAI
LEHNVGIKCAGITPDEARVDEFGLKRMYKSPNGTIRAILNGTVFREPIIA
QNIPRLVTAWNKPIIIARHAYADQYKSVDMRIPPGKGTLKMVYEHENGRV
DEHVVHEFEDAGVGLCMYNTDESIYGFAKATFSYARMRGLPVILASKNTI
LKQYDGRFLQIFAEVHADYPDVPYEHRLIDDFVAYMIKSDGGYVAALKNY
DGDVISDISAQGFGSLGLMTSTLVCPHDNGKTIETEAAHGTVTRHYRQHQ
AGKETSTNPIASIFAWTRGLEHRGKLDHNEDLVNFATRVEKACIDTVESG
TMTKDLAICIHGNKGTDRQFWVTTNEYIDAVVDRLANEPVVDHAEAS*
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mRNA from alignment at NODE_498_length_23634_cov_4.475301:16468..17909-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1382.t1 ID=Gcaud1382.t1|Name=Gcaud1382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1442bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:16468..17909- (Gracilaria caudata M_176_S67 male)
ATGATGCGTCCCTTGCTCCATGGTGCTGCCCTTGCGGCTAGGTCGTTGTC
TACCGCTGCTGTTTCGAGCAAGCTACCCTCTCGCTCGTTTGCAGCAGCAG
CAACTGCCGTCACGAAGATAAAGGTTGAGAACCCAGTTGTTTCCCTCGAT
GGAGATGAGATGACTCGCATGATCTGGGCGACTATCAAGGATCGTCTCAT
CACCCCGTATCTGGATATTCCAATCATAGAGTATGATCTCGGCATCATCA
ACAGGGACAAAACAGATGATCGAGTCACAGTCGAGGCCGCTCATGCCATT
CTGGAGCATAACGTTGGCATTAAATGTGCTGGTATCACTCCAGATGAGGC
TCGCGTTGACGAGTTTGGTCTTAAACGCATGTACAAGTCGCCGAACGGTA
CCATTCGAGCTATTCTTAATGGTACCGTGTTTAGAGAGCCTATCATTGCT
CAAAACATTCCCCGACTTGTTACGGCATGGAACAAACCCATCATCATCGC
CCGCCATGCGTATGCGGACCAGTACAAATCCGTCGATATGCGCATTCCGC
CTGGGAAGGGTACGCTCAAGATGGTGTACGAACATGAAAATGGTCGTGTT
GATGAACATGTCGTGCATGAATTCGAAGATGCGGGAGTCGGGCTGTGTAT
GTATAATACTGATGAAAGCATTTATGGATTTGCCAAGGCTACCTTTTCAT
ATGCTCGGATGAGAGGTTTGCCTGTTATTCTGGCCAGTAAGAATACCATT
CTCAAACAGTATGACGGACGGTTTTTGCAGATCTTTGCCGAAGTTCATGC
CGATTATCCAGATGTTCCTTACGAGCACCGTCTTATTGACGACTTTGTTG
CTTATATGATCAAGTCTGACGGCGGCTATGTCGCTGCTCTCAAGAACTAT
GACGGCGATGTTATTTCTGGTACGTGATTCCAATATTTAGTTACAGCACT
TTTTGTCATCTCTCCATCTCTGCTAACTAATTTCTTTTCTGACGTGTCCT
CTCCATGTGCGTTTCAGACATCAGCGCACAAGGTTTCGGAAGCTTGGGTC
TTATGACCTCAACTCTGGTGTGCCCCCATGACAACGGCAAAACTATTGAG
ACAGAAGCCGCGCACGGTACTGTAACTCGTCATTACCGTCAACATCAGGC
TGGAAAGGAAACTAGTACGAATCCCATTGCATCCATTTTTGCCTGGACAC
GTGGTTTGGAACATCGTGGAAAACTTGATCACAATGAAGATCTCGTCAAT
TTTGCAACCCGAGTTGAGAAGGCTTGCATTGATACGGTCGAAAGCGGCAC
AATGACCAAAGATCTTGCCATTTGTATTCATGGGAACAAAGGTACGGATC
GTCAGTTTTGGGTTACCACCAATGAGTACATTGATGCAGTTGTTGATCGT
CTTGCGAATGAGCCGGTTGTTGATCATGCCGAAGCGTCGTAA
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Coding sequence (CDS) from alignment at NODE_498_length_23634_cov_4.475301:16468..17909-

>Gcaud1382.t1 ID=Gcaud1382.t1|Name=Gcaud1382.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:16468..17909- (Gracilaria caudata M_176_S67 male)
ATGATGCGTCCCTTGCTCCATGGTGCTGCCCTTGCGGCTAGGTCGTTGTC
TACCGCTGCTGTTTCGAGCAAGCTACCCTCTCGCTCGTTTGCAGCAGCAG
CAACTGCCGTCACGAAGATAAAGGTTGAGAACCCAGTTGTTTCCCTCGAT
GGAGATGAGATGACTCGCATGATCTGGGCGACTATCAAGGATCGTCTCAT
CACCCCGTATCTGGATATTCCAATCATAGAGTATGATCTCGGCATCATCA
ACAGGGACAAAACAGATGATCGAGTCACAGTCGAGGCCGCTCATGCCATT
CTGGAGCATAACGTTGGCATTAAATGTGCTGGTATCACTCCAGATGAGGC
TCGCGTTGACGAGTTTGGTCTTAAACGCATGTACAAGTCGCCGAACGGTA
CCATTCGAGCTATTCTTAATGGTACCGTGTTTAGAGAGCCTATCATTGCT
CAAAACATTCCCCGACTTGTTACGGCATGGAACAAACCCATCATCATCGC
CCGCCATGCGTATGCGGACCAGTACAAATCCGTCGATATGCGCATTCCGC
CTGGGAAGGGTACGCTCAAGATGGTGTACGAACATGAAAATGGTCGTGTT
GATGAACATGTCGTGCATGAATTCGAAGATGCGGGAGTCGGGCTGTGTAT
GTATAATACTGATGAAAGCATTTATGGATTTGCCAAGGCTACCTTTTCAT
ATGCTCGGATGAGAGGTTTGCCTGTTATTCTGGCCAGTAAGAATACCATT
CTCAAACAGTATGACGGACGGTTTTTGCAGATCTTTGCCGAAGTTCATGC
CGATTATCCAGATGTTCCTTACGAGCACCGTCTTATTGACGACTTTGTTG
CTTATATGATCAAGTCTGACGGCGGCTATGTCGCTGCTCTCAAGAACTAT
GACGGCGATGTTATTTCTGACATCAGCGCACAAGGTTTCGGAAGCTTGGG
TCTTATGACCTCAACTCTGGTGTGCCCCCATGACAACGGCAAAACTATTG
AGACAGAAGCCGCGCACGGTACTGTAACTCGTCATTACCGTCAACATCAG
GCTGGAAAGGAAACTAGTACGAATCCCATTGCATCCATTTTTGCCTGGAC
ACGTGGTTTGGAACATCGTGGAAAACTTGATCACAATGAAGATCTCGTCA
ATTTTGCAACCCGAGTTGAGAAGGCTTGCATTGATACGGTCGAAAGCGGC
ACAATGACCAAAGATCTTGCCATTTGTATTCATGGGAACAAAGGTACGGA
TCGTCAGTTTTGGGTTACCACCAATGAGTACATTGATGCAGTTGTTGATC
GTCTTGCGAATGAGCCGGTTGTTGATCATGCCGAAGCGTCGTAA
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