Gcaud1379.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1379.t1
Unique Name	Gcaud1379.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	431

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_498_length_23634_cov_4.475301	contig	NODE_498_length_23634_cov_4.475301:9024..10316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1379	Gcaud1379	Gracilaria caudata M_176_S67 male	gene	NODE_498_length_23634_cov_4.475301 9024..10316 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1379.t1.start1	Gcaud1379.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_498_length_23634_cov_4.475301 9024..9026 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1379.t1.CDS1	Gcaud1379.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_498_length_23634_cov_4.475301 9024..10316 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1379.t1.exon1	Gcaud1379.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_498_length_23634_cov_4.475301 9024..10316 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1379.t1.stop1	Gcaud1379.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_498_length_23634_cov_4.475301 10314..10316 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1379.t1	Gcaud1379.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_498_length_23634_cov_4.475301 9024..10316 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+
coding sequence from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+

mRNA sequence

>Gcaud1379.t1 ID=Gcaud1379.t1|Name=Gcaud1379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=431bp
MIWSTLRARELGTSVSKDLVWRAELNTLSYLHLQPAWKTDFKAVNRRCRD
YIVQLSASPDDALLAAASSNGTIEIHEPDDITDSLRLKLTSNHSSRIAAF
TWGRGDGDHLYVAHEAGAIHLFDLNRNDPNTPTHVISELGNKRFITDIIT
LEENIIAVAHNELLHMYDRRQGWKRNSATTTRIGKEIAVAGKGLELYIAS
PGIISLYDRRQLPQGRAFLSMERMNTETVLKRHLPEHSRLDMLRVLTGAP
RGFLFYRTAKGTTGYIDMLGKAGEHITDTRPAPFGESSQISLGETGLQSY
GTLRQSYDLSWHVRKRVGDVVCASQGTGWRAVFPQTFRSSFEVILFGHGR
PIESYERALDNEVACMHAVGRKLGRIALGGIRNEMQMLEADCSLTPAALH
NPREAEVKPPPKTWWSRFRNESDMSQASAG*

spliced messenger RNA

>Gcaud1379.t1 ID=Gcaud1379.t1|Name=Gcaud1379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGAGCACGTTGCGCGCTCGTGAGTTGGGAACATCGGTATCCAA
AGATTTAGTATGGAGAGCGGAGCTCAACACTCTTTCCTACCTTCACTTGC
AGCCTGCGTGGAAAACTGACTTCAAGGCAGTGAACCGTCGTTGTCGCGAC
TACATTGTGCAGCTCAGTGCATCTCCAGACGATGCTCTACTCGCAGCAGC
ATCTTCGAATGGCACTATAGAGATACATGAGCCTGACGACATTACAGATT
CCCTTCGACTGAAGCTGACAAGCAACCATTCTTCCAGAATTGCTGCCTTT
ACGTGGGGTAGAGGCGATGGAGATCATCTTTACGTTGCACATGAAGCTGG
TGCTATTCATTTGTTTGACCTGAATAGAAATGATCCCAATACACCGACAC
ATGTAATTTCGGAACTTGGAAACAAGCGCTTCATCACAGACATAATCACT
CTAGAAGAGAATATCATTGCTGTCGCGCACAACGAGCTCCTTCACATGTA
TGATAGACGCCAGGGATGGAAGAGGAACTCCGCTACAACCACAAGGATAG
GCAAGGAAATTGCTGTAGCTGGGAAGGGGTTAGAACTGTACATCGCCTCA
CCGGGAATCATCTCATTGTATGACCGCCGACAACTACCTCAGGGGAGAGC
GTTCCTCAGCATGGAACGGATGAACACAGAGACGGTTCTTAAACGCCACC
TTCCAGAGCATTCACGACTGGACATGTTACGAGTACTCACCGGGGCACCA
CGAGGTTTTTTGTTTTATCGGACGGCGAAGGGGACCACAGGGTACATTGA
TATGCTTGGGAAAGCTGGAGAGCACATCACAGATACTCGTCCAGCTCCCT
TCGGGGAGTCATCCCAGATCAGCCTGGGCGAAACTGGACTGCAATCGTAC
GGCACATTACGACAATCCTACGATCTGTCATGGCACGTAAGAAAGCGAGT
CGGAGACGTGGTGTGCGCGTCCCAGGGGACGGGTTGGAGAGCAGTATTCC
CTCAGACTTTTCGATCATCATTTGAAGTGATCTTGTTTGGACATGGAAGA
CCTATCGAGAGCTACGAAAGAGCACTTGATAACGAGGTGGCATGCATGCA
CGCAGTTGGGCGGAAGCTAGGACGCATCGCGCTCGGAGGAATCCGAAATG
AAATGCAAATGCTGGAAGCAGATTGTTCTTTGACACCGGCTGCGCTTCAC
AATCCTCGCGAGGCAGAGGTCAAACCGCCTCCCAAAACTTGGTGGTCCCG
TTTCAGGAACGAGAGTGATATGTCGCAGGCCAGTGCTGGATGA

protein sequence of Gcaud1379.t1

>Gcaud1379.t1 ID=Gcaud1379.t1|Name=Gcaud1379.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=431bp
MIWSTLRARELGTSVSKDLVWRAELNTLSYLHLQPAWKTDFKAVNRRCRD
YIVQLSASPDDALLAAASSNGTIEIHEPDDITDSLRLKLTSNHSSRIAAF
TWGRGDGDHLYVAHEAGAIHLFDLNRNDPNTPTHVISELGNKRFITDIIT
LEENIIAVAHNELLHMYDRRQGWKRNSATTTRIGKEIAVAGKGLELYIAS
PGIISLYDRRQLPQGRAFLSMERMNTETVLKRHLPEHSRLDMLRVLTGAP
RGFLFYRTAKGTTGYIDMLGKAGEHITDTRPAPFGESSQISLGETGLQSY
GTLRQSYDLSWHVRKRVGDVVCASQGTGWRAVFPQTFRSSFEVILFGHGR
PIESYERALDNEVACMHAVGRKLGRIALGGIRNEMQMLEADCSLTPAALH
NPREAEVKPPPKTWWSRFRNESDMSQASAG*

mRNA from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1379.t1 ID=Gcaud1379.t1|Name=Gcaud1379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+ (Gracilaria caudata M_176_S67 male)
ATGATTTGGAGCACGTTGCGCGCTCGTGAGTTGGGAACATCGGTATCCAA
AGATTTAGTATGGAGAGCGGAGCTCAACACTCTTTCCTACCTTCACTTGC
AGCCTGCGTGGAAAACTGACTTCAAGGCAGTGAACCGTCGTTGTCGCGAC
TACATTGTGCAGCTCAGTGCATCTCCAGACGATGCTCTACTCGCAGCAGC
ATCTTCGAATGGCACTATAGAGATACATGAGCCTGACGACATTACAGATT
CCCTTCGACTGAAGCTGACAAGCAACCATTCTTCCAGAATTGCTGCCTTT
ACGTGGGGTAGAGGCGATGGAGATCATCTTTACGTTGCACATGAAGCTGG
TGCTATTCATTTGTTTGACCTGAATAGAAATGATCCCAATACACCGACAC
ATGTAATTTCGGAACTTGGAAACAAGCGCTTCATCACAGACATAATCACT
CTAGAAGAGAATATCATTGCTGTCGCGCACAACGAGCTCCTTCACATGTA
TGATAGACGCCAGGGATGGAAGAGGAACTCCGCTACAACCACAAGGATAG
GCAAGGAAATTGCTGTAGCTGGGAAGGGGTTAGAACTGTACATCGCCTCA
CCGGGAATCATCTCATTGTATGACCGCCGACAACTACCTCAGGGGAGAGC
GTTCCTCAGCATGGAACGGATGAACACAGAGACGGTTCTTAAACGCCACC
TTCCAGAGCATTCACGACTGGACATGTTACGAGTACTCACCGGGGCACCA
CGAGGTTTTTTGTTTTATCGGACGGCGAAGGGGACCACAGGGTACATTGA
TATGCTTGGGAAAGCTGGAGAGCACATCACAGATACTCGTCCAGCTCCCT
TCGGGGAGTCATCCCAGATCAGCCTGGGCGAAACTGGACTGCAATCGTAC
GGCACATTACGACAATCCTACGATCTGTCATGGCACGTAAGAAAGCGAGT
CGGAGACGTGGTGTGCGCGTCCCAGGGGACGGGTTGGAGAGCAGTATTCC
CTCAGACTTTTCGATCATCATTTGAAGTGATCTTGTTTGGACATGGAAGA
CCTATCGAGAGCTACGAAAGAGCACTTGATAACGAGGTGGCATGCATGCA
CGCAGTTGGGCGGAAGCTAGGACGCATCGCGCTCGGAGGAATCCGAAATG
AAATGCAAATGCTGGAAGCAGATTGTTCTTTGACACCGGCTGCGCTTCAC
AATCCTCGCGAGGCAGAGGTCAAACCGCCTCCCAAAACTTGGTGGTCCCG
TTTCAGGAACGAGAGTGATATGTCGCAGGCCAGTGCTGGATGA

Coding sequence (CDS) from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+

>Gcaud1379.t1 ID=Gcaud1379.t1|Name=Gcaud1379.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1293bp|location=Sequence derived from alignment at NODE_498_length_23634_cov_4.475301:9024..10316+ (Gracilaria caudata M_176_S67 male)
ATGATTTGGAGCACGTTGCGCGCTCGTGAGTTGGGAACATCGGTATCCAA
AGATTTAGTATGGAGAGCGGAGCTCAACACTCTTTCCTACCTTCACTTGC
AGCCTGCGTGGAAAACTGACTTCAAGGCAGTGAACCGTCGTTGTCGCGAC
TACATTGTGCAGCTCAGTGCATCTCCAGACGATGCTCTACTCGCAGCAGC
ATCTTCGAATGGCACTATAGAGATACATGAGCCTGACGACATTACAGATT
CCCTTCGACTGAAGCTGACAAGCAACCATTCTTCCAGAATTGCTGCCTTT
ACGTGGGGTAGAGGCGATGGAGATCATCTTTACGTTGCACATGAAGCTGG
TGCTATTCATTTGTTTGACCTGAATAGAAATGATCCCAATACACCGACAC
ATGTAATTTCGGAACTTGGAAACAAGCGCTTCATCACAGACATAATCACT
CTAGAAGAGAATATCATTGCTGTCGCGCACAACGAGCTCCTTCACATGTA
TGATAGACGCCAGGGATGGAAGAGGAACTCCGCTACAACCACAAGGATAG
GCAAGGAAATTGCTGTAGCTGGGAAGGGGTTAGAACTGTACATCGCCTCA
CCGGGAATCATCTCATTGTATGACCGCCGACAACTACCTCAGGGGAGAGC
GTTCCTCAGCATGGAACGGATGAACACAGAGACGGTTCTTAAACGCCACC
TTCCAGAGCATTCACGACTGGACATGTTACGAGTACTCACCGGGGCACCA
CGAGGTTTTTTGTTTTATCGGACGGCGAAGGGGACCACAGGGTACATTGA
TATGCTTGGGAAAGCTGGAGAGCACATCACAGATACTCGTCCAGCTCCCT
TCGGGGAGTCATCCCAGATCAGCCTGGGCGAAACTGGACTGCAATCGTAC
GGCACATTACGACAATCCTACGATCTGTCATGGCACGTAAGAAAGCGAGT
CGGAGACGTGGTGTGCGCGTCCCAGGGGACGGGTTGGAGAGCAGTATTCC
CTCAGACTTTTCGATCATCATTTGAAGTGATCTTGTTTGGACATGGAAGA
CCTATCGAGAGCTACGAAAGAGCACTTGATAACGAGGTGGCATGCATGCA
CGCAGTTGGGCGGAAGCTAGGACGCATCGCGCTCGGAGGAATCCGAAATG
AAATGCAAATGCTGGAAGCAGATTGTTCTTTGACACCGGCTGCGCTTCAC
AATCCTCGCGAGGCAGAGGTCAAACCGCCTCCCAAAACTTGGTGGTCCCG
TTTCAGGAACGAGAGTGATATGTCGCAGGCCAGTGCTGGATGA