Gcaud1373.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1373.t1
Unique NameGcaud1373.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1067_length_14310_cov_4.938111contigNODE_1067_length_14310_cov_4.938111:9761..10163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006478291.1
PFAMsCupin_3
Max annot lvl35493|Streptophyta
KEGG koko:K06995
Evalue9.85e-32
EggNOG OGsCOG3450@1|root,2S172@2759|Eukaryota,37VCB@33090|Viridiplantae,3GJPA@35493|Streptophyta
Descriptionsuperfamily. Protein
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1373Gcaud1373Gracilaria caudata M_176_S67 malegeneNODE_1067_length_14310_cov_4.938111 9761..10163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1Gcaud1373.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1067_length_14310_cov_4.938111 9761..10163 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1.stop1Gcaud1373.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1067_length_14310_cov_4.938111 9761..9763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1.CDS1Gcaud1373.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1067_length_14310_cov_4.938111 9761..9864 -
Gcaud1373.t1.CDS2Gcaud1373.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1067_length_14310_cov_4.938111 9956..10163 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1.exon1Gcaud1373.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1067_length_14310_cov_4.938111 9761..9864 -
Gcaud1373.t1.exon2Gcaud1373.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1067_length_14310_cov_4.938111 9956..10163 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1.intron1Gcaud1373.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1067_length_14310_cov_4.938111 9865..9955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1373.t1.start1Gcaud1373.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1067_length_14310_cov_4.938111 10161..10163 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1373.t1 ID=Gcaud1373.t1|Name=Gcaud1373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=104bp
MSSTIVEKGAGMRLIKNADEETINKLGCRSWGTWGCEPSTFPWTYSDDEV
CLVLKGDFTVIPDDGSEKMDVKAGDIAYFPKNMSCTWEVREAVHKHFTFG
TKL*
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spliced messenger RNA

>Gcaud1373.t1 ID=Gcaud1373.t1|Name=Gcaud1373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:9761..10163- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTACCATTGTTGAAAAGGGGGCTGGAATGCGTCTCATTAAGAA
TGCGGACGAAGAGACAATCAATAAGCTGGGCTGTCGTTCATGGGGCACTT
GGGGATGTGAACCAAGCACTTTTCCATGGACTTACTCGGACGATGAAGTG
TGTCTGGTGTTAAAGGGAGATTTTACAGTGATCCCCGACGATGGGAGTGA
AAAAATGGATGTGAAGGCAGGTGATATCGCGTATTTCCCGAAGAACATGT
CGTGCACTTGGGAAGTTCGTGAGGCAGTTCATAAGCACTTTACTTTTGGA
ACAAAACTGTAG
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protein sequence of Gcaud1373.t1

>Gcaud1373.t1 ID=Gcaud1373.t1|Name=Gcaud1373.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=104bp
MSSTIVEKGAGMRLIKNADEETINKLGCRSWGTWGCEPSTFPWTYSDDEV
CLVLKGDFTVIPDDGSEKMDVKAGDIAYFPKNMSCTWEVREAVHKHFTFG
TKL*
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mRNA from alignment at NODE_1067_length_14310_cov_4.938111:9761..10163-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1373.t1 ID=Gcaud1373.t1|Name=Gcaud1373.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=403bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:9761..10163- (Gracilaria caudata M_176_S67 male)
ATGAGCTCTACCATTGTTGAAAAGGGGGCTGGAATGCGTCTCATTAAGAA
TGCGGACGAAGAGACAATCAATAAGCTGGGCTGTCGTTCATGGGGCACTT
GGGGATGTGAACCAAGCACTTTTCCATGGACTTACTCGGACGATGAAGTG
TGTCTGGTGTTAAAGGGAGATTTTACAGTGATCCCCGACGATGGGAGTGA
AAAAATGGGTACGTTCGAACCATCTGTAGGAGCGTTGGGGAATGCTTCTG
GTAGCGTAAAGCGAAAGGTGTGACTGACCTTTGTGTTTTTGTGCAATAGA
TGTGAAGGCAGGTGATATCGCGTATTTCCCGAAGAACATGTCGTGCACTT
GGGAAGTTCGTGAGGCAGTTCATAAGCACTTTACTTTTGGAACAAAACTG
TAG
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Coding sequence (CDS) from alignment at NODE_1067_length_14310_cov_4.938111:9761..10163-

>Gcaud1373.t1 ID=Gcaud1373.t1|Name=Gcaud1373.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=312bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:9761..10163- (Gracilaria caudata M_176_S67 male)
ATGAGCTCTACCATTGTTGAAAAGGGGGCTGGAATGCGTCTCATTAAGAA
TGCGGACGAAGAGACAATCAATAAGCTGGGCTGTCGTTCATGGGGCACTT
GGGGATGTGAACCAAGCACTTTTCCATGGACTTACTCGGACGATGAAGTG
TGTCTGGTGTTAAAGGGAGATTTTACAGTGATCCCCGACGATGGGAGTGA
AAAAATGGATGTGAAGGCAGGTGATATCGCGTATTTCCCGAAGAACATGT
CGTGCACTTGGGAAGTTCGTGAGGCAGTTCATAAGCACTTTACTTTTGGA
ACAAAACTGTAG
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