Gcaud1372.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1372.t1
Unique Name	Gcaud1372.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1067_length_14310_cov_4.938111	contig	NODE_1067_length_14310_cov_4.938111:7143..8441 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5911.EAR99924
PFAMs	Peptidase_C97,Thioredoxin
Max annot lvl	5878\|Ciliophora
Evalue	1.31e-47
EggNOG OGs	COG0526@1\|root,KOG0324@1\|root,KOG0324@2759\|Eukaryota,KOG0907@2759\|Eukaryota,3ZBVZ@5878\|Ciliophora
Description	PPPDE putative peptidase domain
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1372	Gcaud1372	Gracilaria caudata M_176_S67 male	gene	NODE_1067_length_14310_cov_4.938111 7143..8441 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1372.t1.stop1	Gcaud1372.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1067_length_14310_cov_4.938111 7143..7145 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1372.t1.CDS1	Gcaud1372.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1067_length_14310_cov_4.938111 7143..8441 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1372.t1.exon1	Gcaud1372.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1067_length_14310_cov_4.938111 7143..8441 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1372.t1.start1	Gcaud1372.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1067_length_14310_cov_4.938111 8439..8441 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1372.t1	Gcaud1372.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1067_length_14310_cov_4.938111 7143..8441 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441-
coding sequence from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441-

mRNA sequence

>Gcaud1372.t1 ID=Gcaud1372.t1|Name=Gcaud1372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
MARQLSPMVMGKQIDGIWHTGIEVYNREYYFGGGICSDPPNQTPYGTPYS
VEPMGTTTKTKEDFLAFLRSVSRRFSFDNYHLLENNCNNFSDACTTFLLD
KHIPQYILDLPTEAMNSPLGPMIRPVIDQMQTSIRNQSMGHQEILSVPRD
ESSQAQVPETQTEAVQGPTSDSSSSGFQVQLPKTSRTPEYWKSPIVLAKA
NRAAIRKKLNEFDSSFPSNRDPDFDKILSSLRSCSLGKAFPALDFLRLYA
LENDTHAVSIAHDLGFLCERYITADEAPDSARMMTLRIAINMFAHEASSV
YVCREDVTKKVIDALCLALESTNRQVRKPAALLGLNIAGASRRHKDAPEL
AEDSMVRLLYAGVARLNSDPPPGPEESTPLMQMLVIIADCSEESRSYISA
FELNMNAYREKDSCPDDDTRIAARHLSRMLAA*

spliced messenger RNA

>Gcaud1372.t1 ID=Gcaud1372.t1|Name=Gcaud1372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCCAACTCTCTCCCATGGTCATGGGTAAGCAAATAGATGGAAT
ATGGCACACTGGAATTGAGGTTTACAACCGTGAGTACTATTTTGGTGGAG
GAATTTGTTCTGATCCTCCAAATCAGACTCCGTATGGCACTCCATACTCT
GTTGAACCAATGGGAACAACTACGAAGACTAAAGAGGATTTCCTTGCTTT
TCTTCGTTCTGTATCAAGAAGGTTTTCATTTGATAACTATCACTTACTGG
AAAACAATTGTAATAACTTTTCTGATGCATGCACCACGTTTCTTCTCGAC
AAGCATATACCACAGTATATTTTGGACCTGCCGACAGAGGCGATGAATTC
TCCGCTTGGTCCAATGATCAGACCCGTTATTGATCAGATGCAAACTTCTA
TCAGAAACCAAAGCATGGGTCACCAGGAGATTCTCAGTGTACCCAGAGAT
GAGTCATCACAAGCACAAGTACCTGAAACGCAAACAGAAGCCGTTCAGGG
ACCAACATCTGACTCATCATCTTCTGGTTTTCAAGTGCAACTTCCTAAAA
CCTCGAGAACCCCAGAATATTGGAAGTCTCCAATAGTTCTGGCCAAAGCA
AACCGTGCGGCGATAAGAAAGAAACTGAATGAGTTTGATTCGTCATTTCC
ATCAAACAGAGATCCTGACTTCGATAAGATTCTGTCGAGTTTGCGAAGCT
GTTCTTTGGGAAAGGCTTTCCCAGCCCTGGATTTCTTGAGACTCTATGCT
CTAGAAAACGATACCCACGCCGTGAGCATTGCTCACGACCTGGGTTTTCT
CTGCGAACGATACATCACAGCAGATGAGGCACCCGATAGCGCTAGGATGA
TGACGTTGAGGATCGCCATCAATATGTTTGCACACGAGGCCTCCTCCGTT
TATGTCTGCCGAGAAGACGTCACAAAGAAGGTGATCGATGCACTATGTCT
CGCGCTCGAAAGTACGAACCGGCAAGTGCGAAAGCCTGCGGCTCTTTTGG
GGCTAAACATTGCAGGTGCATCCAGAAGACACAAGGATGCACCTGAGCTC
GCCGAAGATAGCATGGTTCGGTTGCTCTATGCCGGTGTTGCTCGCTTGAA
TTCTGATCCTCCGCCAGGTCCTGAAGAATCAACACCGCTCATGCAAATGT
TAGTAATCATTGCGGACTGTAGCGAAGAATCCAGGAGTTATATATCAGCG
TTTGAGCTTAATATGAATGCATATCGCGAGAAGGACTCGTGCCCAGACGA
TGACACACGAATTGCCGCACGGCATTTGTCTCGAATGCTAGCAGCATAG

protein sequence of Gcaud1372.t1

>Gcaud1372.t1 ID=Gcaud1372.t1|Name=Gcaud1372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
MARQLSPMVMGKQIDGIWHTGIEVYNREYYFGGGICSDPPNQTPYGTPYS
VEPMGTTTKTKEDFLAFLRSVSRRFSFDNYHLLENNCNNFSDACTTFLLD
KHIPQYILDLPTEAMNSPLGPMIRPVIDQMQTSIRNQSMGHQEILSVPRD
ESSQAQVPETQTEAVQGPTSDSSSSGFQVQLPKTSRTPEYWKSPIVLAKA
NRAAIRKKLNEFDSSFPSNRDPDFDKILSSLRSCSLGKAFPALDFLRLYA
LENDTHAVSIAHDLGFLCERYITADEAPDSARMMTLRIAINMFAHEASSV
YVCREDVTKKVIDALCLALESTNRQVRKPAALLGLNIAGASRRHKDAPEL
AEDSMVRLLYAGVARLNSDPPPGPEESTPLMQMLVIIADCSEESRSYISA
FELNMNAYREKDSCPDDDTRIAARHLSRMLAA*

mRNA from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1372.t1 ID=Gcaud1372.t1|Name=Gcaud1372.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441- (Gracilaria caudata M_176_S67 male)
ATGGCGCGCCAACTCTCTCCCATGGTCATGGGTAAGCAAATAGATGGAAT
ATGGCACACTGGAATTGAGGTTTACAACCGTGAGTACTATTTTGGTGGAG
GAATTTGTTCTGATCCTCCAAATCAGACTCCGTATGGCACTCCATACTCT
GTTGAACCAATGGGAACAACTACGAAGACTAAAGAGGATTTCCTTGCTTT
TCTTCGTTCTGTATCAAGAAGGTTTTCATTTGATAACTATCACTTACTGG
AAAACAATTGTAATAACTTTTCTGATGCATGCACCACGTTTCTTCTCGAC
AAGCATATACCACAGTATATTTTGGACCTGCCGACAGAGGCGATGAATTC
TCCGCTTGGTCCAATGATCAGACCCGTTATTGATCAGATGCAAACTTCTA
TCAGAAACCAAAGCATGGGTCACCAGGAGATTCTCAGTGTACCCAGAGAT
GAGTCATCACAAGCACAAGTACCTGAAACGCAAACAGAAGCCGTTCAGGG
ACCAACATCTGACTCATCATCTTCTGGTTTTCAAGTGCAACTTCCTAAAA
CCTCGAGAACCCCAGAATATTGGAAGTCTCCAATAGTTCTGGCCAAAGCA
AACCGTGCGGCGATAAGAAAGAAACTGAATGAGTTTGATTCGTCATTTCC
ATCAAACAGAGATCCTGACTTCGATAAGATTCTGTCGAGTTTGCGAAGCT
GTTCTTTGGGAAAGGCTTTCCCAGCCCTGGATTTCTTGAGACTCTATGCT
CTAGAAAACGATACCCACGCCGTGAGCATTGCTCACGACCTGGGTTTTCT
CTGCGAACGATACATCACAGCAGATGAGGCACCCGATAGCGCTAGGATGA
TGACGTTGAGGATCGCCATCAATATGTTTGCACACGAGGCCTCCTCCGTT
TATGTCTGCCGAGAAGACGTCACAAAGAAGGTGATCGATGCACTATGTCT
CGCGCTCGAAAGTACGAACCGGCAAGTGCGAAAGCCTGCGGCTCTTTTGG
GGCTAAACATTGCAGGTGCATCCAGAAGACACAAGGATGCACCTGAGCTC
GCCGAAGATAGCATGGTTCGGTTGCTCTATGCCGGTGTTGCTCGCTTGAA
TTCTGATCCTCCGCCAGGTCCTGAAGAATCAACACCGCTCATGCAAATGT
TAGTAATCATTGCGGACTGTAGCGAAGAATCCAGGAGTTATATATCAGCG
TTTGAGCTTAATATGAATGCATATCGCGAGAAGGACTCGTGCCCAGACGA
TGACACACGAATTGCCGCACGGCATTTGTCTCGAATGCTAGCAGCATAG

Coding sequence (CDS) from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441-

>Gcaud1372.t1 ID=Gcaud1372.t1|Name=Gcaud1372.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1299bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:7143..8441- (Gracilaria caudata M_176_S67 male)
ATGGCGCGCCAACTCTCTCCCATGGTCATGGGTAAGCAAATAGATGGAAT
ATGGCACACTGGAATTGAGGTTTACAACCGTGAGTACTATTTTGGTGGAG
GAATTTGTTCTGATCCTCCAAATCAGACTCCGTATGGCACTCCATACTCT
GTTGAACCAATGGGAACAACTACGAAGACTAAAGAGGATTTCCTTGCTTT
TCTTCGTTCTGTATCAAGAAGGTTTTCATTTGATAACTATCACTTACTGG
AAAACAATTGTAATAACTTTTCTGATGCATGCACCACGTTTCTTCTCGAC
AAGCATATACCACAGTATATTTTGGACCTGCCGACAGAGGCGATGAATTC
TCCGCTTGGTCCAATGATCAGACCCGTTATTGATCAGATGCAAACTTCTA
TCAGAAACCAAAGCATGGGTCACCAGGAGATTCTCAGTGTACCCAGAGAT
GAGTCATCACAAGCACAAGTACCTGAAACGCAAACAGAAGCCGTTCAGGG
ACCAACATCTGACTCATCATCTTCTGGTTTTCAAGTGCAACTTCCTAAAA
CCTCGAGAACCCCAGAATATTGGAAGTCTCCAATAGTTCTGGCCAAAGCA
AACCGTGCGGCGATAAGAAAGAAACTGAATGAGTTTGATTCGTCATTTCC
ATCAAACAGAGATCCTGACTTCGATAAGATTCTGTCGAGTTTGCGAAGCT
GTTCTTTGGGAAAGGCTTTCCCAGCCCTGGATTTCTTGAGACTCTATGCT
CTAGAAAACGATACCCACGCCGTGAGCATTGCTCACGACCTGGGTTTTCT
CTGCGAACGATACATCACAGCAGATGAGGCACCCGATAGCGCTAGGATGA
TGACGTTGAGGATCGCCATCAATATGTTTGCACACGAGGCCTCCTCCGTT
TATGTCTGCCGAGAAGACGTCACAAAGAAGGTGATCGATGCACTATGTCT
CGCGCTCGAAAGTACGAACCGGCAAGTGCGAAAGCCTGCGGCTCTTTTGG
GGCTAAACATTGCAGGTGCATCCAGAAGACACAAGGATGCACCTGAGCTC
GCCGAAGATAGCATGGTTCGGTTGCTCTATGCCGGTGTTGCTCGCTTGAA
TTCTGATCCTCCGCCAGGTCCTGAAGAATCAACACCGCTCATGCAAATGT
TAGTAATCATTGCGGACTGTAGCGAAGAATCCAGGAGTTATATATCAGCG
TTTGAGCTTAATATGAATGCATATCGCGAGAAGGACTCGTGCCCAGACGA
TGACACACGAATTGCCGCACGGCATTTGTCTCGAATGCTAGCAGCATAG