Gcaud1369.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1369.t1
Unique NameGcaud1369.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1067_length_14310_cov_4.938111contigNODE_1067_length_14310_cov_4.938111:859..1274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1369Gcaud1369Gracilaria caudata M_176_S67 malegeneNODE_1067_length_14310_cov_4.938111 859..1274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1Gcaud1369.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1067_length_14310_cov_4.938111 859..1274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1.start1Gcaud1369.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1067_length_14310_cov_4.938111 859..861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1.CDS1Gcaud1369.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1067_length_14310_cov_4.938111 859..1007 +
Gcaud1369.t1.CDS2Gcaud1369.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1067_length_14310_cov_4.938111 1169..1274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1.exon1Gcaud1369.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1067_length_14310_cov_4.938111 859..1007 +
Gcaud1369.t1.exon2Gcaud1369.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1067_length_14310_cov_4.938111 1169..1274 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1.intron1Gcaud1369.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1067_length_14310_cov_4.938111 1008..1168 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1369.t1.stop1Gcaud1369.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1067_length_14310_cov_4.938111 1272..1274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1369.t1 ID=Gcaud1369.t1|Name=Gcaud1369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=85bp
MLPEAGIAVTHKQQQQFMYPYSNSLEVGSGSHQGVTMRSALWSMKRAHHR
FLILRSFNGSIRSRVRVPGYGQILISHLIADDSM*
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spliced messenger RNA

>Gcaud1369.t1 ID=Gcaud1369.t1|Name=Gcaud1369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:859..1274+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCAGAGGCAGGGATTGCGGTCACGCACAAACAACAACAGCAATT
TATGTACCCTTATAGCAACTCGTTAGAAGTTGGATCAGGGAGTCACCAGG
GAGTCACCATGAGATCAGCTCTATGGTCTATGAAACGTGCTCATCATCGG
TTTCTGATATTGAGAAGCTTCAATGGCTCTATAAGGAGTCGAGTGAGGGT
TCCGGGTTACGGACAAATTCTCATCAGCCATCTTATTGCAGACGATTCCA
TGTGA
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protein sequence of Gcaud1369.t1

>Gcaud1369.t1 ID=Gcaud1369.t1|Name=Gcaud1369.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=85bp
MLPEAGIAVTHKQQQQFMYPYSNSLEVGSGSHQGVTMRSALWSMKRAHHR
FLILRSFNGSIRSRVRVPGYGQILISHLIADDSM*
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mRNA from alignment at NODE_1067_length_14310_cov_4.938111:859..1274+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1369.t1 ID=Gcaud1369.t1|Name=Gcaud1369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=416bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:859..1274+ (Gracilaria caudata M_176_S67 male)
ATGTTGCCAGAGGCAGGGATTGCGGTCACGCACAAACAACAACAGCAATT
TATGTACCCTTATAGCAACTCGTTAGAAGTTGGATCAGGGAGTCACCAGG
GAGTCACCATGAGATCAGCTCTATGGTCTATGAAACGTGCTCATCATCGG
TACGTGGTAGATATTACgcgcaagcagtcaacgcaagcacaacatttggc
gtccgctttgcatcagcttagcatccaaaacgatgtCACGATGGGGAGCT
TGAGCTCTGCAAACCAAATGGTTCTCTTGGTTGTTCTAAAACTTCGTTTA
TGCCTTGAAGGTTTCTGATATTGAGAAGCTTCAATGGCTCTATAAGGAGT
CGAGTGAGGGTTCCGGGTTACGGACAAATTCTCATCAGCCATCTTATTGC
AGACGATTCCATGTGA
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Coding sequence (CDS) from alignment at NODE_1067_length_14310_cov_4.938111:859..1274+

>Gcaud1369.t1 ID=Gcaud1369.t1|Name=Gcaud1369.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=255bp|location=Sequence derived from alignment at NODE_1067_length_14310_cov_4.938111:859..1274+ (Gracilaria caudata M_176_S67 male)
ATGTTGCCAGAGGCAGGGATTGCGGTCACGCACAAACAACAACAGCAATT
TATGTACCCTTATAGCAACTCGTTAGAAGTTGGATCAGGGAGTCACCAGG
GAGTCACCATGAGATCAGCTCTATGGTCTATGAAACGTGCTCATCATCGG
TTTCTGATATTGAGAAGCTTCAATGGCTCTATAAGGAGTCGAGTGAGGGT
TCCGGGTTACGGACAAATTCTCATCAGCCATCTTATTGCAGACGATTCCA
TGTGA
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