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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1323.t1.stop1 | Gcaud1323.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_371_length_28318_cov_4.596486 23734..23736 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1323.t1.exon1 | Gcaud1323.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_371_length_28318_cov_4.596486 23734..26412 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1323.t1.start1 | Gcaud1323.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_371_length_28318_cov_4.596486 26410..26412 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1323.t1 ID=Gcaud1323.t1|Name=Gcaud1323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=893bp MSSNSDMESVSISDVEMEEEEEVFVPTAISQPPPQAPVPVAGISLPQSAS QPTPKRITMRERALAMRDARLKRNQAKSMKKSGEASGNNPTQNVTDRAQA GDSENGAIVPTGRQEATPKMSRRANSSTALESSIEPNSHESQSLGSKRPG LESKKSEAQAIGKGKRTQLRRESGTKKSAKNNTALVKPNEPNKDPGDTNL LGPHEGMPNGQSTLAKDGSKASKTSSGTRKDQRKRKVAAVAVEGKEGGDD SGHESDVILLQSKVSTAAPPRAKKRARVESAKSAASPKATTRSLKKKKGA AVPQSPSGATTTAAGTEVTVDLEQGGVEAPSKKKKTSKKSTRANVRILDD DEPLVVRDKRSSKPVVDLLSKDVQTSGTGEQNPKPLPPKRRPGRPRKYPK VDAPGPQPPTKATGEEDNLPQAQGNQEAPVSGTKAQRQTRSRGRKVKQAA PDETESAKKSSHEDDRDFQVSKEKATTRLGTRSASKEKSPMLPAPKKIHK PGDDHVAADKINVENVGSKQIEAAAPEVQVNEGPEVQVNEGSVHTVTQSP TRTKEPSLNDTARRSATKPKRIPFALSASPQGLNIMQPRELNMNASRRKS LSHQEGLNRLTSVVDQLQREGEAFIQTEHRICDQLVSFPPESASHVVYNI PCGNFGVPVPEDDRRAIADATLRDAVMHAKLEYQAKQRAAVSQLAENLVK AMKDWKVAKNAVLRDIIPEELRPEAGAPVETFEQNGHHVDINNSRRIMNE KINVPQEKPQDENEEQIEGSGVNEEPTKELRTGNTPRISRQEAVAQIRVL KNAEAMKKFAGYAYIGLNLDCYRSCTILKLCEFDEGLSYDDLYRITPIGK VTLRKKIHSLVSSKNLVEETVELPSGKLMTVFKTAPHIAKMG* back to topspliced messenger RNA >Gcaud1323.t1 ID=Gcaud1323.t1|Name=Gcaud1323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:23734..26412- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGTCAAACTCGGACATGGAGTCCGTCTCCATTTCAGATGTTGAAAT GGAAGAGGAAGAAGAGGTCTTCGTGCCTACCGCTATATCTCAACCGCCTC CGCAAGCCCCAGTACCAGTTGCCGGCATATCGCTTCCCCAATCCGCATCG CAACCGACCCCGAAAAGAATCACTATGCGTGAACGGGCGTTAGCTATGCG TGACGCACGGTTGAAAAGAAACCAAGCCAAATCAATGAAGAAGTCGGGGG AAGCTTCAGGAAATAATCCCACACAGAACGTCACTGACAGGGCGCAGGCA GGTGATTCTGAGAACGGGGCAATTGTGCCCACTGGTCGTCAAGAGGCCAC CCCAAAGATGTCTCGGAGGGCTAATTCTAGTACAGCATTGGAGTCCTCCA TCGAACCCAATAGCCATGAATCACAGTCTTTGGGATCAAAACGTCCAGGT CTCGAAAGCAAGAAATCGGAAGCTCAAGCGATAGGAAAGGGAAAAAGGAC TCAGCTTCGCAGAGAAAGCGGTACAAAGAAGAGTGCGAAGAATAACACAG CTCTTGTGAAACCAAACGAGCCCAACAAGGACCCCGGTGACACTAATCTG CTTGGTCCTCATGAGGGTATGCCTAATGGTCAAAGCACTCTTGCCAAAGA TGGGTCCAAAGCTTCCAAGACCAGCTCTGGAACTAGAAAGGACCAACGAA AAAGGAAGGTAGCCGCAGTGGCCGTTGAAGGAAAAGAGGGTGGGGATGAC TCTGGGCATGAGTCTGACGTGATACTGCTCCAAAGTAAGGTAAGCACCGC CGCGCCACCAAGAGCAAAAAAAAGGGCCAGGGTTGAGAGTGCGAAGTCAG CAGCATCACCAAAGGCGACGACAAGATCGCTGAAGAAGAAGAAAGGGGCA GCAGTCCCCCAATCGCCCTCTGGTGCGACTACAACTGCTGCAGGAACCGA GGTTACCGTAGATTTGGAGCAGGGTGGAGTCGAAGCTCCATCCAAGAAGA AGAAGACTTCGAAGAAAAGCACGCGCGCGAATGTACGCATTTTAGACGAC GATGAGCCGCTTGTGGTGCGAGACAAGAGATCCAGCAAGCCCGTTGTGGA TCTCCTTTCAAAAGATGTACAGACTTCGGGAACAGGCGAACAGAATCCGA AACCGCTTCCGCCGAAGCGGCGACCAGGTCGTCCACGGAAGTATCCGAAG GTTGACGCGCCAGGCCCTCAACCTCCGACGAAAGCCACCGGCGAGGAAGA TAACCTGCCACAAGCGCAAGGAAATCAAGAAGCACCAGTGTCGGGAACGA AAGCTCAGCGTCAAACCAGGTCTAGAGGCAGGAAAGTTAAGCAGGCTGCT CCCGATGAAACAGAAAGTGCAAAGAAATCGAGTCACGAAGATGATAGGGA TTTCCAAGTCTCGAAGGAGAAAGCAACTACACGATTGGGCACGCGTTCAG CTTCGAAGGAAAAATCACCGATGCTACCCGCTCCCAAAAAGATACACAAG CCCGGGGACGATCATGTAGCTGCTGACAAAATCAATGTTGAGAATGTAGG TTCGAAGCAAATTGAAGCAGCTGCACCAGAGGTGCAGGTTAATGAAGGAC CAGAGGTGCAGGTTAATGAAGGATCTGTACACACTGTTACGCAATCACCT ACAAGGACGAAAGAGCCATCTCTCAACGATACAGCTCGCCGGTCAGCCAC GAAACCGAAACGTATTCCCTTTGCTTTGTCAGCTTCACCACAGGGATTGA ATATTATGCAGCCGCGTGAACTGAACATGAATGCATCGAGAAGGAAATCC CTGAGCCACCAGGAAGGACTTAATCGATTGACCTCCGTGGTAGATCAATT ACAGCGCGAAGGCGAAGCTTTTATCCAGACAGAACATCGGATTTGTGATC AGCTGGTATCGTTTCCTCCTGAGTCGGCTTCCCACGTAGTTTATAATATT CCATGCGGAAACTTTGGTGTTCCAGTGCCTGAAGATGACCGCAGAGCGAT AGCTGATGCTACACTGCGTGATGCAGTGATGCACGCCAAGCTTGAATATC AAGCAAAACAAAGAGCTGCTGTTTCACAATTAGCTGAGAATTTGGTCAAA GCTATGAAGGACTGGAAGGTCGCAAAGAATGCTGTGTTGCGCGATATTAT TCCAGAAGAGCTCCGACCGGAGGCTGGAGCACCGGTGGAAACTTTCGAGC AGAATGGACACCATGTGGATATCAACAACAGCCGTCGGATTATGAACGAG AAGATTAATGTTCCGCAAGAAAAGCCTCAGGACGAAAACGAAGAGCAAAT TGAGGGTTCGGGTGTAAATGAAGAGCCTACCAAGGAGCTCAGGACTGGAA ACACACCAAGAATTTCGCGACAAGAAGCTGTTGCTCAAATTCGAGTACTG AAGAATGCTGAAGCTATGAAAAAGTTCGCTGGGTACGCATATATTGGTCT CAATCTTGACTGCTATCGATCCTGCACTATATTGAAGTTGTGCGAATTTG ATGAGGGACTGAGCTATGATGATCTGTACCGCATAACTCCTATAGGGAAG GTCACGTTGCGGAAAAAGATACACTCTCTAGTATCCTCCAAAAACTTGGT GGAAGAAACAGTTGAACTTCCTTCTGGGAAACTCATGACGGTTTTCAAAA CTGCCCCCCATATTGCTAAGATGGGTTAA back to topprotein sequence of Gcaud1323.t1 >Gcaud1323.t1 ID=Gcaud1323.t1|Name=Gcaud1323.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=893bp
MSSNSDMESVSISDVEMEEEEEVFVPTAISQPPPQAPVPVAGISLPQSAS QPTPKRITMRERALAMRDARLKRNQAKSMKKSGEASGNNPTQNVTDRAQA GDSENGAIVPTGRQEATPKMSRRANSSTALESSIEPNSHESQSLGSKRPG LESKKSEAQAIGKGKRTQLRRESGTKKSAKNNTALVKPNEPNKDPGDTNL LGPHEGMPNGQSTLAKDGSKASKTSSGTRKDQRKRKVAAVAVEGKEGGDD SGHESDVILLQSKVSTAAPPRAKKRARVESAKSAASPKATTRSLKKKKGA AVPQSPSGATTTAAGTEVTVDLEQGGVEAPSKKKKTSKKSTRANVRILDD DEPLVVRDKRSSKPVVDLLSKDVQTSGTGEQNPKPLPPKRRPGRPRKYPK VDAPGPQPPTKATGEEDNLPQAQGNQEAPVSGTKAQRQTRSRGRKVKQAA PDETESAKKSSHEDDRDFQVSKEKATTRLGTRSASKEKSPMLPAPKKIHK PGDDHVAADKINVENVGSKQIEAAAPEVQVNEGPEVQVNEGSVHTVTQSP TRTKEPSLNDTARRSATKPKRIPFALSASPQGLNIMQPRELNMNASRRKS LSHQEGLNRLTSVVDQLQREGEAFIQTEHRICDQLVSFPPESASHVVYNI PCGNFGVPVPEDDRRAIADATLRDAVMHAKLEYQAKQRAAVSQLAENLVK AMKDWKVAKNAVLRDIIPEELRPEAGAPVETFEQNGHHVDINNSRRIMNE KINVPQEKPQDENEEQIEGSGVNEEPTKELRTGNTPRISRQEAVAQIRVL KNAEAMKKFAGYAYIGLNLDCYRSCTILKLCEFDEGLSYDDLYRITPIGK VTLRKKIHSLVSSKNLVEETVELPSGKLMTVFKTAPHIAKMG* back to topmRNA from alignment at NODE_371_length_28318_cov_4.596486:23734..26412- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1323.t1 ID=Gcaud1323.t1|Name=Gcaud1323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2679bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:23734..26412- (Gracilaria caudata M_176_S67 male) ATGTCGTCAAACTCGGACATGGAGTCCGTCTCCATTTCAGATGTTGAAAT
GGAAGAGGAAGAAGAGGTCTTCGTGCCTACCGCTATATCTCAACCGCCTC
CGCAAGCCCCAGTACCAGTTGCCGGCATATCGCTTCCCCAATCCGCATCG
CAACCGACCCCGAAAAGAATCACTATGCGTGAACGGGCGTTAGCTATGCG
TGACGCACGGTTGAAAAGAAACCAAGCCAAATCAATGAAGAAGTCGGGGG
AAGCTTCAGGAAATAATCCCACACAGAACGTCACTGACAGGGCGCAGGCA
GGTGATTCTGAGAACGGGGCAATTGTGCCCACTGGTCGTCAAGAGGCCAC
CCCAAAGATGTCTCGGAGGGCTAATTCTAGTACAGCATTGGAGTCCTCCA
TCGAACCCAATAGCCATGAATCACAGTCTTTGGGATCAAAACGTCCAGGT
CTCGAAAGCAAGAAATCGGAAGCTCAAGCGATAGGAAAGGGAAAAAGGAC
TCAGCTTCGCAGAGAAAGCGGTACAAAGAAGAGTGCGAAGAATAACACAG
CTCTTGTGAAACCAAACGAGCCCAACAAGGACCCCGGTGACACTAATCTG
CTTGGTCCTCATGAGGGTATGCCTAATGGTCAAAGCACTCTTGCCAAAGA
TGGGTCCAAAGCTTCCAAGACCAGCTCTGGAACTAGAAAGGACCAACGAA
AAAGGAAGGTAGCCGCAGTGGCCGTTGAAGGAAAAGAGGGTGGGGATGAC
TCTGGGCATGAGTCTGACGTGATACTGCTCCAAAGTAAGGTAAGCACCGC
CGCGCCACCAAGAGCAAAAAAAAGGGCCAGGGTTGAGAGTGCGAAGTCAG
CAGCATCACCAAAGGCGACGACAAGATCGCTGAAGAAGAAGAAAGGGGCA
GCAGTCCCCCAATCGCCCTCTGGTGCGACTACAACTGCTGCAGGAACCGA
GGTTACCGTAGATTTGGAGCAGGGTGGAGTCGAAGCTCCATCCAAGAAGA
AGAAGACTTCGAAGAAAAGCACGCGCGCGAATGTACGCATTTTAGACGAC
GATGAGCCGCTTGTGGTGCGAGACAAGAGATCCAGCAAGCCCGTTGTGGA
TCTCCTTTCAAAAGATGTACAGACTTCGGGAACAGGCGAACAGAATCCGA
AACCGCTTCCGCCGAAGCGGCGACCAGGTCGTCCACGGAAGTATCCGAAG
GTTGACGCGCCAGGCCCTCAACCTCCGACGAAAGCCACCGGCGAGGAAGA
TAACCTGCCACAAGCGCAAGGAAATCAAGAAGCACCAGTGTCGGGAACGA
AAGCTCAGCGTCAAACCAGGTCTAGAGGCAGGAAAGTTAAGCAGGCTGCT
CCCGATGAAACAGAAAGTGCAAAGAAATCGAGTCACGAAGATGATAGGGA
TTTCCAAGTCTCGAAGGAGAAAGCAACTACACGATTGGGCACGCGTTCAG
CTTCGAAGGAAAAATCACCGATGCTACCCGCTCCCAAAAAGATACACAAG
CCCGGGGACGATCATGTAGCTGCTGACAAAATCAATGTTGAGAATGTAGG
TTCGAAGCAAATTGAAGCAGCTGCACCAGAGGTGCAGGTTAATGAAGGAC
CAGAGGTGCAGGTTAATGAAGGATCTGTACACACTGTTACGCAATCACCT
ACAAGGACGAAAGAGCCATCTCTCAACGATACAGCTCGCCGGTCAGCCAC
GAAACCGAAACGTATTCCCTTTGCTTTGTCAGCTTCACCACAGGGATTGA
ATATTATGCAGCCGCGTGAACTGAACATGAATGCATCGAGAAGGAAATCC
CTGAGCCACCAGGAAGGACTTAATCGATTGACCTCCGTGGTAGATCAATT
ACAGCGCGAAGGCGAAGCTTTTATCCAGACAGAACATCGGATTTGTGATC
AGCTGGTATCGTTTCCTCCTGAGTCGGCTTCCCACGTAGTTTATAATATT
CCATGCGGAAACTTTGGTGTTCCAGTGCCTGAAGATGACCGCAGAGCGAT
AGCTGATGCTACACTGCGTGATGCAGTGATGCACGCCAAGCTTGAATATC
AAGCAAAACAAAGAGCTGCTGTTTCACAATTAGCTGAGAATTTGGTCAAA
GCTATGAAGGACTGGAAGGTCGCAAAGAATGCTGTGTTGCGCGATATTAT
TCCAGAAGAGCTCCGACCGGAGGCTGGAGCACCGGTGGAAACTTTCGAGC
AGAATGGACACCATGTGGATATCAACAACAGCCGTCGGATTATGAACGAG
AAGATTAATGTTCCGCAAGAAAAGCCTCAGGACGAAAACGAAGAGCAAAT
TGAGGGTTCGGGTGTAAATGAAGAGCCTACCAAGGAGCTCAGGACTGGAA
ACACACCAAGAATTTCGCGACAAGAAGCTGTTGCTCAAATTCGAGTACTG
AAGAATGCTGAAGCTATGAAAAAGTTCGCTGGGTACGCATATATTGGTCT
CAATCTTGACTGCTATCGATCCTGCACTATATTGAAGTTGTGCGAATTTG
ATGAGGGACTGAGCTATGATGATCTGTACCGCATAACTCCTATAGGGAAG
GTCACGTTGCGGAAAAAGATACACTCTCTAGTATCCTCCAAAAACTTGGT
GGAAGAAACAGTTGAACTTCCTTCTGGGAAACTCATGACGGTTTTCAAAA
CTGCCCCCCATATTGCTAAGATGGGTTAA back to topCoding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:23734..26412- >Gcaud1323.t1 ID=Gcaud1323.t1|Name=Gcaud1323.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2679bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:23734..26412- (Gracilaria caudata M_176_S67 male) ATGTCGTCAAACTCGGACATGGAGTCCGTCTCCATTTCAGATGTTGAAAT GGAAGAGGAAGAAGAGGTCTTCGTGCCTACCGCTATATCTCAACCGCCTC CGCAAGCCCCAGTACCAGTTGCCGGCATATCGCTTCCCCAATCCGCATCG CAACCGACCCCGAAAAGAATCACTATGCGTGAACGGGCGTTAGCTATGCG TGACGCACGGTTGAAAAGAAACCAAGCCAAATCAATGAAGAAGTCGGGGG AAGCTTCAGGAAATAATCCCACACAGAACGTCACTGACAGGGCGCAGGCA GGTGATTCTGAGAACGGGGCAATTGTGCCCACTGGTCGTCAAGAGGCCAC CCCAAAGATGTCTCGGAGGGCTAATTCTAGTACAGCATTGGAGTCCTCCA TCGAACCCAATAGCCATGAATCACAGTCTTTGGGATCAAAACGTCCAGGT CTCGAAAGCAAGAAATCGGAAGCTCAAGCGATAGGAAAGGGAAAAAGGAC TCAGCTTCGCAGAGAAAGCGGTACAAAGAAGAGTGCGAAGAATAACACAG CTCTTGTGAAACCAAACGAGCCCAACAAGGACCCCGGTGACACTAATCTG CTTGGTCCTCATGAGGGTATGCCTAATGGTCAAAGCACTCTTGCCAAAGA TGGGTCCAAAGCTTCCAAGACCAGCTCTGGAACTAGAAAGGACCAACGAA AAAGGAAGGTAGCCGCAGTGGCCGTTGAAGGAAAAGAGGGTGGGGATGAC TCTGGGCATGAGTCTGACGTGATACTGCTCCAAAGTAAGGTAAGCACCGC CGCGCCACCAAGAGCAAAAAAAAGGGCCAGGGTTGAGAGTGCGAAGTCAG CAGCATCACCAAAGGCGACGACAAGATCGCTGAAGAAGAAGAAAGGGGCA GCAGTCCCCCAATCGCCCTCTGGTGCGACTACAACTGCTGCAGGAACCGA GGTTACCGTAGATTTGGAGCAGGGTGGAGTCGAAGCTCCATCCAAGAAGA AGAAGACTTCGAAGAAAAGCACGCGCGCGAATGTACGCATTTTAGACGAC GATGAGCCGCTTGTGGTGCGAGACAAGAGATCCAGCAAGCCCGTTGTGGA TCTCCTTTCAAAAGATGTACAGACTTCGGGAACAGGCGAACAGAATCCGA AACCGCTTCCGCCGAAGCGGCGACCAGGTCGTCCACGGAAGTATCCGAAG GTTGACGCGCCAGGCCCTCAACCTCCGACGAAAGCCACCGGCGAGGAAGA TAACCTGCCACAAGCGCAAGGAAATCAAGAAGCACCAGTGTCGGGAACGA AAGCTCAGCGTCAAACCAGGTCTAGAGGCAGGAAAGTTAAGCAGGCTGCT CCCGATGAAACAGAAAGTGCAAAGAAATCGAGTCACGAAGATGATAGGGA TTTCCAAGTCTCGAAGGAGAAAGCAACTACACGATTGGGCACGCGTTCAG CTTCGAAGGAAAAATCACCGATGCTACCCGCTCCCAAAAAGATACACAAG CCCGGGGACGATCATGTAGCTGCTGACAAAATCAATGTTGAGAATGTAGG TTCGAAGCAAATTGAAGCAGCTGCACCAGAGGTGCAGGTTAATGAAGGAC CAGAGGTGCAGGTTAATGAAGGATCTGTACACACTGTTACGCAATCACCT ACAAGGACGAAAGAGCCATCTCTCAACGATACAGCTCGCCGGTCAGCCAC GAAACCGAAACGTATTCCCTTTGCTTTGTCAGCTTCACCACAGGGATTGA ATATTATGCAGCCGCGTGAACTGAACATGAATGCATCGAGAAGGAAATCC CTGAGCCACCAGGAAGGACTTAATCGATTGACCTCCGTGGTAGATCAATT ACAGCGCGAAGGCGAAGCTTTTATCCAGACAGAACATCGGATTTGTGATC AGCTGGTATCGTTTCCTCCTGAGTCGGCTTCCCACGTAGTTTATAATATT CCATGCGGAAACTTTGGTGTTCCAGTGCCTGAAGATGACCGCAGAGCGAT AGCTGATGCTACACTGCGTGATGCAGTGATGCACGCCAAGCTTGAATATC AAGCAAAACAAAGAGCTGCTGTTTCACAATTAGCTGAGAATTTGGTCAAA GCTATGAAGGACTGGAAGGTCGCAAAGAATGCTGTGTTGCGCGATATTAT TCCAGAAGAGCTCCGACCGGAGGCTGGAGCACCGGTGGAAACTTTCGAGC AGAATGGACACCATGTGGATATCAACAACAGCCGTCGGATTATGAACGAG AAGATTAATGTTCCGCAAGAAAAGCCTCAGGACGAAAACGAAGAGCAAAT TGAGGGTTCGGGTGTAAATGAAGAGCCTACCAAGGAGCTCAGGACTGGAA ACACACCAAGAATTTCGCGACAAGAAGCTGTTGCTCAAATTCGAGTACTG AAGAATGCTGAAGCTATGAAAAAGTTCGCTGGGTACGCATATATTGGTCT CAATCTTGACTGCTATCGATCCTGCACTATATTGAAGTTGTGCGAATTTG ATGAGGGACTGAGCTATGATGATCTGTACCGCATAACTCCTATAGGGAAG GTCACGTTGCGGAAAAAGATACACTCTCTAGTATCCTCCAAAAACTTGGT GGAAGAAACAGTTGAACTTCCTTCTGGGAAACTCATGACGGTTTTCAAAA CTGCCCCCCATATTGCTAAGATGGGTTAA back to top
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