Gcaud1305.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1305.t1
Unique Name	Gcaud1305.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	264

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1882_length_7904_cov_4.729809	contig	NODE_1882_length_7904_cov_4.729809:2408..3199 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1305	Gcaud1305	Gracilaria caudata M_176_S67 male	gene	NODE_1882_length_7904_cov_4.729809 2408..3199 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1305.t1.stop1	Gcaud1305.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1882_length_7904_cov_4.729809 2408..2410 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1305.t1.CDS1	Gcaud1305.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1882_length_7904_cov_4.729809 2408..3199 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1305.t1.exon1	Gcaud1305.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1882_length_7904_cov_4.729809 2408..3199 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1305.t1.start1	Gcaud1305.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1882_length_7904_cov_4.729809 3197..3199 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1305.t1	Gcaud1305.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1882_length_7904_cov_4.729809 2408..3199 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199-
coding sequence from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199-

mRNA sequence

>Gcaud1305.t1 ID=Gcaud1305.t1|Name=Gcaud1305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
LTNESEKDNNGSHPKTSHYQVSGNPVVEIDEPSLSCKEEIPGADCSAHPG
DESRLPFIDSAVDRAERREVERNPIIDTVWEEAPSNHTNVGNVKKLTTLY
EEDISDAYREVVVRIVSIEANSQAAPPIFALSNDDTRGGLSHDSGVFDSE
KRNDEVSDSDLEYARERDEIINQEGTDEDKEILDLDSNLLRDDNDTAHQH
DDDQHVHENGTELKSVPSRHDHESIVEFVESAGVARANSERSSRICAVEE
SSTSSFATAEETW*

spliced messenger RNA

>Gcaud1305.t1 ID=Gcaud1305.t1|Name=Gcaud1305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGACCAATGAAAGTGAGAAAGATAATAACGGCTCTCACCCGAAGACGAG
TCACTATCAGGTGTCCGGGAATCCTGTGGTTGAGATTGACGAACCTTCTT
TATCATGTAAGGAGGAGATCCCTGGTGCAGATTGCTCCGCGCACCCGGGG
GATGAATCTCGCTTACCCTTCATTGATTCGGCAGTAGACCGAGCAGAAAG
AAGAGAAGTGGAAAGAAATCCCATCATTGATACTGTTTGGGAAGAAGCTC
CATCAAATCATACCAATGTTGGAAACGTAAAGAAGCTCACAACTCTGTAT
GAAGAGGATATCTCAGATGCTTATCGAGAAGTTGTTGTGCGGATAGTATC
CATCGAGGCAAACTCTCAAGCTGCGCCTCCTATCTTCGCTTTATCTAACG
ATGACACTCGAGGAGGGCTATCTCATGACAGCGGTGTGTTCGACTCTGAA
AAGAGAAATGATGAAGTATCGGACAGTGACTTGGAATATGCTCGGGAAAG
AGATGAGATTATAAACCAAGAAGGAACTGACGAAGACAAAGAAATTCTAG
ATCTGGATAGCAATCTGCTGAGAGATGATAACGATACTGCCCACCAGCAC
GATGATGATCAGCACGTTCATGAAAATGGGACTGAATTGAAATCTGTGCC
ATCACGTCACGATCATGAGTCCATTGTGGAGTTCGTGGAGAGTGCTGGCG
TGGCTCGAGCTAACAGTGAAAGAAGCTCGAGAATTTGTGCAGTGGAAGAG
TCTTCTACCAGCTCATTTGCCACTGCCGAAGAAACTTGGTAA

protein sequence of Gcaud1305.t1

>Gcaud1305.t1 ID=Gcaud1305.t1|Name=Gcaud1305.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
LTNESEKDNNGSHPKTSHYQVSGNPVVEIDEPSLSCKEEIPGADCSAHPG
DESRLPFIDSAVDRAERREVERNPIIDTVWEEAPSNHTNVGNVKKLTTLY
EEDISDAYREVVVRIVSIEANSQAAPPIFALSNDDTRGGLSHDSGVFDSE
KRNDEVSDSDLEYARERDEIINQEGTDEDKEILDLDSNLLRDDNDTAHQH
DDDQHVHENGTELKSVPSRHDHESIVEFVESAGVARANSERSSRICAVEE
SSTSSFATAEETW*

mRNA from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1305.t1 ID=Gcaud1305.t1|Name=Gcaud1305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199- (Gracilaria caudata M_176_S67 male)
CTGACCAATGAAAGTGAGAAAGATAATAACGGCTCTCACCCGAAGACGAG
TCACTATCAGGTGTCCGGGAATCCTGTGGTTGAGATTGACGAACCTTCTT
TATCATGTAAGGAGGAGATCCCTGGTGCAGATTGCTCCGCGCACCCGGGG
GATGAATCTCGCTTACCCTTCATTGATTCGGCAGTAGACCGAGCAGAAAG
AAGAGAAGTGGAAAGAAATCCCATCATTGATACTGTTTGGGAAGAAGCTC
CATCAAATCATACCAATGTTGGAAACGTAAAGAAGCTCACAACTCTGTAT
GAAGAGGATATCTCAGATGCTTATCGAGAAGTTGTTGTGCGGATAGTATC
CATCGAGGCAAACTCTCAAGCTGCGCCTCCTATCTTCGCTTTATCTAACG
ATGACACTCGAGGAGGGCTATCTCATGACAGCGGTGTGTTCGACTCTGAA
AAGAGAAATGATGAAGTATCGGACAGTGACTTGGAATATGCTCGGGAAAG
AGATGAGATTATAAACCAAGAAGGAACTGACGAAGACAAAGAAATTCTAG
ATCTGGATAGCAATCTGCTGAGAGATGATAACGATACTGCCCACCAGCAC
GATGATGATCAGCACGTTCATGAAAATGGGACTGAATTGAAATCTGTGCC
ATCACGTCACGATCATGAGTCCATTGTGGAGTTCGTGGAGAGTGCTGGCG
TGGCTCGAGCTAACAGTGAAAGAAGCTCGAGAATTTGTGCAGTGGAAGAG
TCTTCTACCAGCTCATTTGCCACTGCCGAAGAAACTTGGTAA

Coding sequence (CDS) from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199-

>Gcaud1305.t1 ID=Gcaud1305.t1|Name=Gcaud1305.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_1882_length_7904_cov_4.729809:2408..3199- (Gracilaria caudata M_176_S67 male)
CTGACCAATGAAAGTGAGAAAGATAATAACGGCTCTCACCCGAAGACGAG
TCACTATCAGGTGTCCGGGAATCCTGTGGTTGAGATTGACGAACCTTCTT
TATCATGTAAGGAGGAGATCCCTGGTGCAGATTGCTCCGCGCACCCGGGG
GATGAATCTCGCTTACCCTTCATTGATTCGGCAGTAGACCGAGCAGAAAG
AAGAGAAGTGGAAAGAAATCCCATCATTGATACTGTTTGGGAAGAAGCTC
CATCAAATCATACCAATGTTGGAAACGTAAAGAAGCTCACAACTCTGTAT
GAAGAGGATATCTCAGATGCTTATCGAGAAGTTGTTGTGCGGATAGTATC
CATCGAGGCAAACTCTCAAGCTGCGCCTCCTATCTTCGCTTTATCTAACG
ATGACACTCGAGGAGGGCTATCTCATGACAGCGGTGTGTTCGACTCTGAA
AAGAGAAATGATGAAGTATCGGACAGTGACTTGGAATATGCTCGGGAAAG
AGATGAGATTATAAACCAAGAAGGAACTGACGAAGACAAAGAAATTCTAG
ATCTGGATAGCAATCTGCTGAGAGATGATAACGATACTGCCCACCAGCAC
GATGATGATCAGCACGTTCATGAAAATGGGACTGAATTGAAATCTGTGCC
ATCACGTCACGATCATGAGTCCATTGTGGAGTTCGTGGAGAGTGCTGGCG
TGGCTCGAGCTAACAGTGAAAGAAGCTCGAGAATTTGTGCAGTGGAAGAG
TCTTCTACCAGCTCATTTGCCACTGCCGAAGAAACTTGGTAA