Gcaud1299.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1299.t1
Unique Name	Gcaud1299.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1471_length_10393_cov_3.781208	contig	NODE_1471_length_10393_cov_3.781208:9279..10364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1299	Gcaud1299	Gracilaria caudata M_176_S67 male	gene	NODE_1471_length_10393_cov_3.781208 9279..10364 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1299.t1.start1	Gcaud1299.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1471_length_10393_cov_3.781208 9279..9281 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1299.t1.CDS1	Gcaud1299.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1471_length_10393_cov_3.781208 9279..10364 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1299.t1.exon1	Gcaud1299.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1471_length_10393_cov_3.781208 9279..10364 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1299.t1.stop1	Gcaud1299.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1471_length_10393_cov_3.781208 10362..10364 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1299.t1	Gcaud1299.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1471_length_10393_cov_3.781208 9279..10364 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+
coding sequence from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+

mRNA sequence

>Gcaud1299.t1 ID=Gcaud1299.t1|Name=Gcaud1299.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MRVPPFYITKPKLASSAPSTRRTSSPPFDDASDCSSSERDSANRCGRASD
RLAKSRATGQSYRDNERQHIFRLITAVEKGRLENSLLFVLFTYAYKRQRA
MRSIPPHIHSHLWQLPSDTSEDCVPYMAAKMYPLSAKSQTLLGQRMISGA
MATVLLELMMHRRNMWGTTHAMHADATQCDLSCTQRCDTDRRRRRRPPYR
TATTASDADGIVQFAIRQFSRERIDHRDNESALLDHVQRRLAHLTVVAHR
YDECEATHDAVYSLSDFTFDVKLVERPPSPTTPDAAEFGSWLKMKRTEGA
KRCSRCGVLKITGSGHGRSKCADGLSISSHIPYPASPASDEENDDMELDE
LDVREEVMQDM*

spliced messenger RNA

>Gcaud1299.t1 ID=Gcaud1299.t1|Name=Gcaud1299.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGCCGCCTTTCTACATCACCAAGCCCAAACTCGCCTCCTCCGC
GCCGTCCACACGTCGCACCTCTTCACCGCCTTTCGATGACGCCTCCGATT
GTAGCTCCTCTGAACGAGATTCTGCAAACAGATGTGGTCGTGCGTCGGAT
CGTCTCGCCAAATCGCGAGCCACGGGCCAAAGTTATCGCGATAATGAGCG
TCAACACATCTTCCGGCTCATCACCGCCGTCGAGAAGGGACGTCTTGAAA
ACTCGCTGTTGTTTGTGTTGTTCACGTACGCCTACAAGCGTCAACGAGCC
ATGCGTTCTATACCACCACATATTCATTCTCATCTGTGGCAACTTCCGAG
TGATACTTCGGAGGATTGTGTGCCGTACATGGCCGCCAAGATGTACCCGC
TGTCCGCAAAGTCTCAGACGCTGCTAGGGCAGCGCATGATCTCCGGCGCA
ATGGCTACCGTATTGCTGGAGTTGATGATGCACCGACGAAACATGTGGGG
TACCACTCACGCCATGCACGCCGACGCCACGCAATGTGACCTCAGTTGTA
CGCAGCGTTGCGACACGGACCGTCGTCGACGACGACGGCCGCCGTATCGC
ACCGCCACCACTGCGAGCGATGCGGACGGCATCGTTCAATTCGCCATCCG
CCAATTCAGTCGTGAACGAATCGACCATCGCGACAATGAGAGCGCATTAC
TGGATCACGTACAGCGTCGACTCGCACATCTCACCGTGGTGGCGCACAGG
TATGATGAATGTGAGGCTACACACGACGCGGTATACTCTCTGAGTGACTT
TACGTTTGACGTGAAATTGGTGGAACGACCGCCGTCGCCGACCACACCGG
ATGCGGCGGAGTTTGGATCGTGGCTCAAGATGAAGCGCACGGAGGGCGCC
AAGCGATGTAGCCGGTGCGGGGTGCTCAAGATCACGGGCAGTGGACACGG
GCGCTCCAAATGTGCGGACGGCTTGAGCATCTCGTCGCACATACCGTATC
CGGCGTCGCCGGCGTCGGACGAGGAGAACGACGACATGGAGCTCGACGAG
CTCGATGTCAGGGAGGAGGTGATGCAGGACATGTGA

protein sequence of Gcaud1299.t1

>Gcaud1299.t1 ID=Gcaud1299.t1|Name=Gcaud1299.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MRVPPFYITKPKLASSAPSTRRTSSPPFDDASDCSSSERDSANRCGRASD
RLAKSRATGQSYRDNERQHIFRLITAVEKGRLENSLLFVLFTYAYKRQRA
MRSIPPHIHSHLWQLPSDTSEDCVPYMAAKMYPLSAKSQTLLGQRMISGA
MATVLLELMMHRRNMWGTTHAMHADATQCDLSCTQRCDTDRRRRRRPPYR
TATTASDADGIVQFAIRQFSRERIDHRDNESALLDHVQRRLAHLTVVAHR
YDECEATHDAVYSLSDFTFDVKLVERPPSPTTPDAAEFGSWLKMKRTEGA
KRCSRCGVLKITGSGHGRSKCADGLSISSHIPYPASPASDEENDDMELDE
LDVREEVMQDM*

mRNA from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1299.t1 ID=Gcaud1299.t1|Name=Gcaud1299.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+ (Gracilaria caudata M_176_S67 male)
ATGCGCGTGCCGCCTTTCTACATCACCAAGCCCAAACTCGCCTCCTCCGC
GCCGTCCACACGTCGCACCTCTTCACCGCCTTTCGATGACGCCTCCGATT
GTAGCTCCTCTGAACGAGATTCTGCAAACAGATGTGGTCGTGCGTCGGAT
CGTCTCGCCAAATCGCGAGCCACGGGCCAAAGTTATCGCGATAATGAGCG
TCAACACATCTTCCGGCTCATCACCGCCGTCGAGAAGGGACGTCTTGAAA
ACTCGCTGTTGTTTGTGTTGTTCACGTACGCCTACAAGCGTCAACGAGCC
ATGCGTTCTATACCACCACATATTCATTCTCATCTGTGGCAACTTCCGAG
TGATACTTCGGAGGATTGTGTGCCGTACATGGCCGCCAAGATGTACCCGC
TGTCCGCAAAGTCTCAGACGCTGCTAGGGCAGCGCATGATCTCCGGCGCA
ATGGCTACCGTATTGCTGGAGTTGATGATGCACCGACGAAACATGTGGGG
TACCACTCACGCCATGCACGCCGACGCCACGCAATGTGACCTCAGTTGTA
CGCAGCGTTGCGACACGGACCGTCGTCGACGACGACGGCCGCCGTATCGC
ACCGCCACCACTGCGAGCGATGCGGACGGCATCGTTCAATTCGCCATCCG
CCAATTCAGTCGTGAACGAATCGACCATCGCGACAATGAGAGCGCATTAC
TGGATCACGTACAGCGTCGACTCGCACATCTCACCGTGGTGGCGCACAGG
TATGATGAATGTGAGGCTACACACGACGCGGTATACTCTCTGAGTGACTT
TACGTTTGACGTGAAATTGGTGGAACGACCGCCGTCGCCGACCACACCGG
ATGCGGCGGAGTTTGGATCGTGGCTCAAGATGAAGCGCACGGAGGGCGCC
AAGCGATGTAGCCGGTGCGGGGTGCTCAAGATCACGGGCAGTGGACACGG
GCGCTCCAAATGTGCGGACGGCTTGAGCATCTCGTCGCACATACCGTATC
CGGCGTCGCCGGCGTCGGACGAGGAGAACGACGACATGGAGCTCGACGAG
CTCGATGTCAGGGAGGAGGTGATGCAGGACATGTGA

Coding sequence (CDS) from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+

>Gcaud1299.t1 ID=Gcaud1299.t1|Name=Gcaud1299.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:9279..10364+ (Gracilaria caudata M_176_S67 male)
ATGCGCGTGCCGCCTTTCTACATCACCAAGCCCAAACTCGCCTCCTCCGC
GCCGTCCACACGTCGCACCTCTTCACCGCCTTTCGATGACGCCTCCGATT
GTAGCTCCTCTGAACGAGATTCTGCAAACAGATGTGGTCGTGCGTCGGAT
CGTCTCGCCAAATCGCGAGCCACGGGCCAAAGTTATCGCGATAATGAGCG
TCAACACATCTTCCGGCTCATCACCGCCGTCGAGAAGGGACGTCTTGAAA
ACTCGCTGTTGTTTGTGTTGTTCACGTACGCCTACAAGCGTCAACGAGCC
ATGCGTTCTATACCACCACATATTCATTCTCATCTGTGGCAACTTCCGAG
TGATACTTCGGAGGATTGTGTGCCGTACATGGCCGCCAAGATGTACCCGC
TGTCCGCAAAGTCTCAGACGCTGCTAGGGCAGCGCATGATCTCCGGCGCA
ATGGCTACCGTATTGCTGGAGTTGATGATGCACCGACGAAACATGTGGGG
TACCACTCACGCCATGCACGCCGACGCCACGCAATGTGACCTCAGTTGTA
CGCAGCGTTGCGACACGGACCGTCGTCGACGACGACGGCCGCCGTATCGC
ACCGCCACCACTGCGAGCGATGCGGACGGCATCGTTCAATTCGCCATCCG
CCAATTCAGTCGTGAACGAATCGACCATCGCGACAATGAGAGCGCATTAC
TGGATCACGTACAGCGTCGACTCGCACATCTCACCGTGGTGGCGCACAGG
TATGATGAATGTGAGGCTACACACGACGCGGTATACTCTCTGAGTGACTT
TACGTTTGACGTGAAATTGGTGGAACGACCGCCGTCGCCGACCACACCGG
ATGCGGCGGAGTTTGGATCGTGGCTCAAGATGAAGCGCACGGAGGGCGCC
AAGCGATGTAGCCGGTGCGGGGTGCTCAAGATCACGGGCAGTGGACACGG
GCGCTCCAAATGTGCGGACGGCTTGAGCATCTCGTCGCACATACCGTATC
CGGCGTCGCCGGCGTCGGACGAGGAGAACGACGACATGGAGCTCGACGAG
CTCGATGTCAGGGAGGAGGTGATGCAGGACATGTGA