Gcaud1297.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1297.t1
Unique NameGcaud1297.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1471_length_10393_cov_3.781208contigNODE_1471_length_10393_cov_3.781208:4758..6215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SDV5
PFAMsB3,Mucin2_WxxW,VWD
Max annot lvl2759|Eukaryota
KEGG koko:K21125
KEGG Pathwayko04657,map04657
Evalue8.02e-24
EggNOG OGsKOG1216@1|root,KOG1216@2759|Eukaryota
Descriptionsensory perception of sound
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1297Gcaud1297Gracilaria caudata M_176_S67 malegeneNODE_1471_length_10393_cov_3.781208 4758..6215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1Gcaud1297.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1471_length_10393_cov_3.781208 4758..6215 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1.stop1Gcaud1297.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1471_length_10393_cov_3.781208 4758..4760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1.CDS1Gcaud1297.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1471_length_10393_cov_3.781208 4758..5978 -
Gcaud1297.t1.CDS2Gcaud1297.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1471_length_10393_cov_3.781208 6126..6215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1.exon1Gcaud1297.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1471_length_10393_cov_3.781208 4758..5978 -
Gcaud1297.t1.exon2Gcaud1297.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1471_length_10393_cov_3.781208 6126..6215 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1.intron1Gcaud1297.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1471_length_10393_cov_3.781208 5979..6125 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1297.t1.start1Gcaud1297.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1471_length_10393_cov_3.781208 6213..6215 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1297.t1 ID=Gcaud1297.t1|Name=Gcaud1297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=437bp
MRTAHRPQKSSNNAPAAPAFGWSALLTALQAILLSVPFVRTLPFARVRNN
HNILHTLPTPPPMAQPCALSSGPLSDPSSTADAVMLPVSENREPSSRCAS
ADHTQPPVSSKPTFDLTALPDELISMCYADLPATDLVALEHVSRRLRHLI
AYDSVCWRRCTQTRWGHLTTNSMLLPSAARHAGTWKQLYSEKAICDAKNS
PWLTLCHSEKLAILDLIKNHHAPSLHNASWSVTSPTEPATPPADKPSPLS
FSSPISVMSSAPSHFDCINIVLLIDASSSVTDDDFDAMKSFARTLVHSLR
QTHDNSNVAVVQFNQHPKVEISLTPVKKPKLSTAIDNMEQLMGSTDIAAP
IRRAREILAEEAGPGDRAIVLLTDGQTHADELHESEKEARKAFDQVGARM
FTLGVGRDVDESGLSRVAAGSEGGMNFTLRRLGSTK*
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spliced messenger RNA

>Gcaud1297.t1 ID=Gcaud1297.t1|Name=Gcaud1297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:4758..6215- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACAGCTCACCGCCCGCAAAAGTCGTCCAACAACGCCCCCGCCGC
CCCCGCATTCGGCTGGTCCGCCCTGCTCACCGCCCTGCAGGCCATCCTGC
TCTCTGTTCCCTTCGTTCGCACGCTACCGTTCGCCCGCGTTCGAAACAAC
CACAACATCCTCCACACGCTTCCCACCCCTCCACCCATGGCCCAGCCCTG
CGCTCTCTCTTCCGGCCCCCTCTCCGACCCCTCCTCCACCGCGGACGCCG
TCATGCTTCCTGTCTCCGAAAACCGCGAGCCCTCCTCGCGCTGCGCCTCC
GCGGACCACACCCAACCTCCCGTCTCCTCCAAGCCCACCTTCGACCTTAC
AGCTCTCCCGGACGAGTTGATCTCCATGTGTTACGCTGATCTCCCCGCCA
CAGACCTCGTCGCCCTGGAGCACGTGTCGCGCCGTCTGCGTCATCTCATC
GCATACGACTCTGTGTGCTGGAGACGTTGCACCCAGACCCGCTGGGGTCA
CCTCACCACCAACTCCATGCTCCTCCCGTCCGCCGCCAGACACGCCGGCA
CCTGGAAGCAGCTCTACTCGGAGAAGGCTATCTGTGACGCCAAGAATAGC
CCGTGGCTCACGCTGTGTCACAGCGAGAAGCTCGCCATTCTTGATCTCAT
CAAGAACCACCACGCTCCTTCCTTGCACAACGCGTCGTGGTCCGTCACTT
CCCCCACGGAGCCCGCTACTCCGCCTGCCGATAAACCTTCTCCCTTGTCC
TTCTCTTCCCCCATCAGCGTCATGTCTTCTGCCCCGTCCCATTTCGATTG
TATCAATATCGTCTTGCTCATAGACGCTAGTTCCAGTGTCACAGATGACG
ACTTTGACGCAATGAAGAGTTTTGCACGCACGCTTGTCCACAGTCTGCGT
CAGACCCACGACAACTCAAACGTCGCCGTCGTGCAGTTCAACCAGCACCC
CAAGGTGGAGATTTCTCTCACCCCCGTCAAGAAGCCCAAGCTTTCCACCG
CCATTGACAACATGGAGCAGCTCATGGGCAGCACAGATATCGCTGCACCC
ATCCGCAGAGCCCGTGAGATTCTGGCCGAGGAGGCCGGTCCTGGTGACCG
CGCCATCGTGCTTCTCACCGACGGTCAGACTCACGCGGATGAGCTGCATG
AGAGCGAAAAGGAAGCTCGCAAGGCTTTTGACCAGGTCGGTGCAAGGATG
TTCACGCTCGGCGTCGGTCGTGATGTGGACGAGAGTGGGTTGAGCCGTGT
GGCTGCCGGTTCGGAAGGCGGCATGAACTTCACGCTGAGACGCCTCGGTT
CCACCAAGTGA
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protein sequence of Gcaud1297.t1

>Gcaud1297.t1 ID=Gcaud1297.t1|Name=Gcaud1297.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=437bp
MRTAHRPQKSSNNAPAAPAFGWSALLTALQAILLSVPFVRTLPFARVRNN
HNILHTLPTPPPMAQPCALSSGPLSDPSSTADAVMLPVSENREPSSRCAS
ADHTQPPVSSKPTFDLTALPDELISMCYADLPATDLVALEHVSRRLRHLI
AYDSVCWRRCTQTRWGHLTTNSMLLPSAARHAGTWKQLYSEKAICDAKNS
PWLTLCHSEKLAILDLIKNHHAPSLHNASWSVTSPTEPATPPADKPSPLS
FSSPISVMSSAPSHFDCINIVLLIDASSSVTDDDFDAMKSFARTLVHSLR
QTHDNSNVAVVQFNQHPKVEISLTPVKKPKLSTAIDNMEQLMGSTDIAAP
IRRAREILAEEAGPGDRAIVLLTDGQTHADELHESEKEARKAFDQVGARM
FTLGVGRDVDESGLSRVAAGSEGGMNFTLRRLGSTK*
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mRNA from alignment at NODE_1471_length_10393_cov_3.781208:4758..6215-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1297.t1 ID=Gcaud1297.t1|Name=Gcaud1297.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:4758..6215- (Gracilaria caudata M_176_S67 male)
ATGCGCACAGCTCACCGCCCGCAAAAGTCGTCCAACAACGCCCCCGCCGC
CCCCGCATTCGGCTGGTCCGCCCTGCTCACCGCCCTGCAGGTAAGCTCGT
CTTCTTCAGCGCCACCCACCCTTCCACCACCTCCTATTTAACCTCCCAAA
ACCGACGAAAAAAAAGGTGAAAAAAAAAAACCAGCACAGCGCTCACACCC
CCCTCCCCTCCTTGTGTTTTACCCGCTCTTCTTCCAGGCCATCCTGCTCT
CTGTTCCCTTCGTTCGCACGCTACCGTTCGCCCGCGTTCGAAACAACCAC
AACATCCTCCACACGCTTCCCACCCCTCCACCCATGGCCCAGCCCTGCGC
TCTCTCTTCCGGCCCCCTCTCCGACCCCTCCTCCACCGCGGACGCCGTCA
TGCTTCCTGTCTCCGAAAACCGCGAGCCCTCCTCGCGCTGCGCCTCCGCG
GACCACACCCAACCTCCCGTCTCCTCCAAGCCCACCTTCGACCTTACAGC
TCTCCCGGACGAGTTGATCTCCATGTGTTACGCTGATCTCCCCGCCACAG
ACCTCGTCGCCCTGGAGCACGTGTCGCGCCGTCTGCGTCATCTCATCGCA
TACGACTCTGTGTGCTGGAGACGTTGCACCCAGACCCGCTGGGGTCACCT
CACCACCAACTCCATGCTCCTCCCGTCCGCCGCCAGACACGCCGGCACCT
GGAAGCAGCTCTACTCGGAGAAGGCTATCTGTGACGCCAAGAATAGCCCG
TGGCTCACGCTGTGTCACAGCGAGAAGCTCGCCATTCTTGATCTCATCAA
GAACCACCACGCTCCTTCCTTGCACAACGCGTCGTGGTCCGTCACTTCCC
CCACGGAGCCCGCTACTCCGCCTGCCGATAAACCTTCTCCCTTGTCCTTC
TCTTCCCCCATCAGCGTCATGTCTTCTGCCCCGTCCCATTTCGATTGTAT
CAATATCGTCTTGCTCATAGACGCTAGTTCCAGTGTCACAGATGACGACT
TTGACGCAATGAAGAGTTTTGCACGCACGCTTGTCCACAGTCTGCGTCAG
ACCCACGACAACTCAAACGTCGCCGTCGTGCAGTTCAACCAGCACCCCAA
GGTGGAGATTTCTCTCACCCCCGTCAAGAAGCCCAAGCTTTCCACCGCCA
TTGACAACATGGAGCAGCTCATGGGCAGCACAGATATCGCTGCACCCATC
CGCAGAGCCCGTGAGATTCTGGCCGAGGAGGCCGGTCCTGGTGACCGCGC
CATCGTGCTTCTCACCGACGGTCAGACTCACGCGGATGAGCTGCATGAGA
GCGAAAAGGAAGCTCGCAAGGCTTTTGACCAGGTCGGTGCAAGGATGTTC
ACGCTCGGCGTCGGTCGTGATGTGGACGAGAGTGGGTTGAGCCGTGTGGC
TGCCGGTTCGGAAGGCGGCATGAACTTCACGCTGAGACGCCTCGGTTCCA
CCAAGTGA
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Coding sequence (CDS) from alignment at NODE_1471_length_10393_cov_3.781208:4758..6215-

>Gcaud1297.t1 ID=Gcaud1297.t1|Name=Gcaud1297.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1311bp|location=Sequence derived from alignment at NODE_1471_length_10393_cov_3.781208:4758..6215- (Gracilaria caudata M_176_S67 male)
ATGCGCACAGCTCACCGCCCGCAAAAGTCGTCCAACAACGCCCCCGCCGC
CCCCGCATTCGGCTGGTCCGCCCTGCTCACCGCCCTGCAGGCCATCCTGC
TCTCTGTTCCCTTCGTTCGCACGCTACCGTTCGCCCGCGTTCGAAACAAC
CACAACATCCTCCACACGCTTCCCACCCCTCCACCCATGGCCCAGCCCTG
CGCTCTCTCTTCCGGCCCCCTCTCCGACCCCTCCTCCACCGCGGACGCCG
TCATGCTTCCTGTCTCCGAAAACCGCGAGCCCTCCTCGCGCTGCGCCTCC
GCGGACCACACCCAACCTCCCGTCTCCTCCAAGCCCACCTTCGACCTTAC
AGCTCTCCCGGACGAGTTGATCTCCATGTGTTACGCTGATCTCCCCGCCA
CAGACCTCGTCGCCCTGGAGCACGTGTCGCGCCGTCTGCGTCATCTCATC
GCATACGACTCTGTGTGCTGGAGACGTTGCACCCAGACCCGCTGGGGTCA
CCTCACCACCAACTCCATGCTCCTCCCGTCCGCCGCCAGACACGCCGGCA
CCTGGAAGCAGCTCTACTCGGAGAAGGCTATCTGTGACGCCAAGAATAGC
CCGTGGCTCACGCTGTGTCACAGCGAGAAGCTCGCCATTCTTGATCTCAT
CAAGAACCACCACGCTCCTTCCTTGCACAACGCGTCGTGGTCCGTCACTT
CCCCCACGGAGCCCGCTACTCCGCCTGCCGATAAACCTTCTCCCTTGTCC
TTCTCTTCCCCCATCAGCGTCATGTCTTCTGCCCCGTCCCATTTCGATTG
TATCAATATCGTCTTGCTCATAGACGCTAGTTCCAGTGTCACAGATGACG
ACTTTGACGCAATGAAGAGTTTTGCACGCACGCTTGTCCACAGTCTGCGT
CAGACCCACGACAACTCAAACGTCGCCGTCGTGCAGTTCAACCAGCACCC
CAAGGTGGAGATTTCTCTCACCCCCGTCAAGAAGCCCAAGCTTTCCACCG
CCATTGACAACATGGAGCAGCTCATGGGCAGCACAGATATCGCTGCACCC
ATCCGCAGAGCCCGTGAGATTCTGGCCGAGGAGGCCGGTCCTGGTGACCG
CGCCATCGTGCTTCTCACCGACGGTCAGACTCACGCGGATGAGCTGCATG
AGAGCGAAAAGGAAGCTCGCAAGGCTTTTGACCAGGTCGGTGCAAGGATG
TTCACGCTCGGCGTCGGTCGTGATGTGGACGAGAGTGGGTTGAGCCGTGT
GGCTGCCGGTTCGGAAGGCGGCATGAACTTCACGCTGAGACGCCTCGGTT
CCACCAAGTGA
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