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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1292.t1.start1 | Gcaud1292.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_2038_length_7108_cov_4.705572 4002..4004 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1292.t1.stop1 | Gcaud1292.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2038_length_7108_cov_4.705572 6521..6523 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1292.t1 ID=Gcaud1292.t1|Name=Gcaud1292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=141bp
MSPECEVTSSSPVHSTPVINMSMSSAANPYKEIAVPDDAEFPLNKILVPQ
CASVVAVRASEVTDFKSYKVIHRLTDDHKNIARIPNSDTDRKKVWRLLEE
NRKRENENQRKSESSCTGHTYPRECDEKRRRNQPTDDVVD* back to topspliced messenger RNA >Gcaud1292.t1 ID=Gcaud1292.t1|Name=Gcaud1292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp|location=Sequence derived from alignment at NODE_2038_length_7108_cov_4.705572:4002..6523+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGCCTGAGTGCGAAGTCACGAGTTCTTCTCCAGTGCACTCAACTCC
TGTAATCAACATGTCCATGTCAAGTGCTGCCAACCCGTACAAAGAAATTG
CCGTTCCCGATGATGCCGAGTTTCCTCTCAATAAGATACTGGTGCCACAA
TGTGCCAGCGTTGTTGCTGTGCGTGCTTCGGAGGTCACGGATTTTAAGAG
CTACAAAGTAATTCATAGGCTTACGGATGACCACAAAAATATTGCAAGAA
TCCCGAATTCGGATACTGATAGGAAGAAAGTATGGCGACTGCTCGAGGAA
AATAGAAAAAGAGAGAATGAGAATCAGCGCAAAAGCGAGTCCAGCTGCAC
CGGCCACACCTACCCCCGCGAGTGCGATGAGAAGCGCCGGCGCAATCAGC
CCACCGatgacgttgtggactga back to topprotein sequence of Gcaud1292.t1 >Gcaud1292.t1 ID=Gcaud1292.t1|Name=Gcaud1292.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=141bp
MSPECEVTSSSPVHSTPVINMSMSSAANPYKEIAVPDDAEFPLNKILVPQ
CASVVAVRASEVTDFKSYKVIHRLTDDHKNIARIPNSDTDRKKVWRLLEE
NRKRENENQRKSESSCTGHTYPRECDEKRRRNQPTDDVVD* back to topmRNA from alignment at NODE_2038_length_7108_cov_4.705572:4002..6523+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1292.t1 ID=Gcaud1292.t1|Name=Gcaud1292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2522bp|location=Sequence derived from alignment at NODE_2038_length_7108_cov_4.705572:4002..6523+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCTGAGTGCGAAGTCACGAGTTCTTCTCCAGTGCACTCAACTCC
TGTAATCAACATGTCCATGTCAAGTGCTGCCAACCCGTACAAAGAAATTG
CCGTTCCCGATGATGCCGAGTTTCCTCTCAATAAGATACTGGTGCCACAA
TGTGCCAGCGTTGTTGCTGTGCGTGCTTCGGAGGTCACGGATTTTAAGAG
CTACAAAGTAATTCATAGGCTTACGGATGACCACAAAAATATTGCAAGAA
TCCCGAATTCGGATACTGATAGGAAGAAAGTATGGCGACTGCTCGAGGAA
AATAGAAAAAGAGAGAATGAGAATCAGCGCAAAAGGTACGCTAGAGATCG
GCAGAATGAATCCTCCACTGAAAGAAAAGAACGATTGCAGAAGCGGCGCA
AGTGGTATGCTCGGAAGAAAGCAAAGCTTCACAAAATTGGgttgctatca
aaaactttggatgtatctgacgagtcaaacaactctttttctgggtcgac
atccagttttgcaagtgaatccgactctaaatactcctgtccgtcttctg
ttgctcccaaaacatcgtcaagcggttctgagatttcttctccgctcaat
aatggcggtcaggcagaatctgccagtgatgccgatatgtcgggtaacgg
aacagattcaagtaatcaagaagctttagttgcctctgatatgacttctg
ccccgagcgacaaactgctttacgagcttcATGCCAAGACTCATCACGTC
AAGGTTTATTACCATAGCCTTACACGTGTGGAGGACGTTCCCGATTCCAA
CTTAAAGGTACTCCAAGTTCACGCTCCACGGCAGAAAAGTACTGTATCTT
ATGATAATCATCTATGAAGATGTATTTGACCACCAATATTGAGAATTTCT
CGAGTTGTTGAACTACTGTCACGCTTTTTCTCACGTGAACGCCACCGACG
TGATATTGGACATGAGAAATCCGGGCATGTGATAGAATGTCAGTTGATGC
CAGAGGAATCTATTACGTACGATGATCTAGGAATGAGCTACAGCTCCCTG
ACCACAGCCCCATAGAGCAGCGTCACGAACAAGAATGGCACGTACTGCGC
CTTAATACAAGACGGCGGTACTGGGTCTGCTCGATGAATATGATTTTCCT
GTAAAGAGTTTACGCTTTTGATTATATCCCGGTACCTTCCAAGCGTGCCA
GCAATTTGGAGGAGTTCAGAAAGACCCAGCTTCAGTGATAAGGGCGCGCG
CCATACCAGTTAACTGTTCGACCTGCAACAACTGGCAGAACTTTCTTCTA
TCGTTCTGGATCAGCGGTGACAGCACCACTCGATGAAAACGTTGCCTACG
ATACAATGGAATGGTCTCTGTGCGGTGCAAGAGACTCCAGATACTCGAAT
ATCGCATGCGCCGTGATACATTTGGCGAGGAACGTTACCAGGCGATTACC
GTAACTTCAATCAACGAGGGCATCTGTTAGTTCTTCACGAGCACAatttg
atggagagacgaaaattgaccaaggattatcaacgtagtccatgcaggac
ataacggtcagaggcatcgttacggcaaacgcaagtgcgccagctacagt
ggaagcagtggacacagcgggggggatacgtttgttgcagagtggttaag
tggccttagaaacccaaaatttggcaaacgccatcgccatctcaagaagt
ctccgcgattccgaccgtaaggcgatgtgctgggagcaaggtagctcgct
tttgagagctggttcaaactggtcaagggcactgccaaaaccccaatcat
ttagccaggtcagtatgcatatacaaacgtgaaaactggcgacctgacgt
ctggactcgaggccacgagagccgacttttcgcttctctctcttcttctt
gcgtttgccaaaacgagagcgcttTTTGTTGTCGGTTCAAgtcatcatat
tcgtcttagtcatcgtcactgtacgtagggggacggggaagctccttctc
cgcgtcaatctctgttggttttgttcttgcatccacgtcgggtttgtcct
caattgcctcgtgagctttcgcagcctccatcctcagcttctcagcaact
gctttctcccatcgccctttctctcgtagatgccgacgcttccgttctcc
aatgttccgcgggtcatccgcatgttcaaagtcaaattcttcaagatttg
tgcttacgcgattctttgccttctttaccgataagccagcaccggccacg
ccaaagagaccgccgacaacagCAGCCGACGCAACGGAGCCAGATGCAGC
GAGTCCAGCTGCACCGGCCACACCTACCCCCGCGAGTGCGATGAGAAGCG
CCGGCGCAATCAGCCCACCGGTAAGTCCGAACATAACACCGCCCGCTAAG
GTGattccgccaattttcataggcttttttgcgcgattcgtttttttttt
cttctttcaatgagtaattgatcaacagattttgcattcggtctcgacgc
gctagatgacgttgtggactga back to topCoding sequence (CDS) from alignment at NODE_2038_length_7108_cov_4.705572:4002..6523+ >Gcaud1292.t1 ID=Gcaud1292.t1|Name=Gcaud1292.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=423bp|location=Sequence derived from alignment at NODE_2038_length_7108_cov_4.705572:4002..6523+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCTGAGTGCGAAGTCACGAGTTCTTCTCCAGTGCACTCAACTCC
TGTAATCAACATGTCCATGTCAAGTGCTGCCAACCCGTACAAAGAAATTG
CCGTTCCCGATGATGCCGAGTTTCCTCTCAATAAGATACTGGTGCCACAA
TGTGCCAGCGTTGTTGCTGTGCGTGCTTCGGAGGTCACGGATTTTAAGAG
CTACAAAGTAATTCATAGGCTTACGGATGACCACAAAAATATTGCAAGAA
TCCCGAATTCGGATACTGATAGGAAGAAAGTATGGCGACTGCTCGAGGAA
AATAGAAAAAGAGAGAATGAGAATCAGCGCAAAAGCGAGTCCAGCTGCAC
CGGCCACACCTACCCCCGCGAGTGCGATGAGAAGCGCCGGCGCAATCAGC
CCACCGatgacgttgtggactga back to top
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