Gcaud1280.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1280.t1
Unique Name	Gcaud1280.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	241

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_468_length_24594_cov_4.796474	contig	NODE_468_length_24594_cov_4.796474:21862..22685 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI2G39760.1
PFAMs	Ras
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07874
KEGG Pathway	ko05134,map05134
GOs	GO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006888,GO:0008092,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0017022,GO:0030742,GO:0031090,GO:0031984,GO:0032029,GO:0032036,GO:0032588,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071944,GO:0080115,GO:0098588,GO:0098791
Evalue	4.18e-66
EggNOG OGs	KOG0084@1\|root,KOG0084@2759\|Eukaryota,37PGN@33090\|Viridiplantae,3GD0A@35493\|Streptophyta,3KNJI@4447\|Liliopsida,3I5AZ@38820\|Poales
Description	Ras family
COG category	U
BRITE	ko00000,ko00001,ko04031,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1280	Gcaud1280	Gracilaria caudata M_176_S67 male	gene	NODE_468_length_24594_cov_4.796474 21862..22685 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1	Gcaud1280.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_468_length_24594_cov_4.796474 21862..22685 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1.start1	Gcaud1280.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_468_length_24594_cov_4.796474 21862..21864 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1.CDS1	Gcaud1280.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_468_length_24594_cov_4.796474 21862..22478 +
Gcaud1280.t1.CDS2	Gcaud1280.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_468_length_24594_cov_4.796474 22580..22685 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1.exon1	Gcaud1280.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_468_length_24594_cov_4.796474 21862..22478 +
Gcaud1280.t1.exon2	Gcaud1280.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_468_length_24594_cov_4.796474 22580..22685 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1.intron1	Gcaud1280.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_468_length_24594_cov_4.796474 22479..22579 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1280.t1.stop1	Gcaud1280.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_468_length_24594_cov_4.796474 22683..22685 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+
coding sequence from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+

mRNA sequence

>Gcaud1280.t1 ID=Gcaud1280.t1|Name=Gcaud1280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=241bp
MSSGQAYSTLTKYDETTSSQGAKMTNIQVPAQASVEYHYLYKLLLIGDSG
VGKSCILTRFADSTYEDCQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQE
RFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEIENNTTSPVRTL
LIGNKCDLNGEREVNRCEAEALARKYGMSYIETSAKTAENVFEAFVTISK
EIYESNSVNGIVSLAQQMDTIRVTDDMRLGQKEKSSKCGC*

spliced messenger RNA

>Gcaud1280.t1 ID=Gcaud1280.t1|Name=Gcaud1280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCAGGTCAGGCTTATAGCACCTTGACCAAGTATGATGAGACAAC
TAGTTCTCAAGGCGCGAAGATGACGAACATTCAAGTACCTGCTCAAGCCT
CGGTAGAGTACCATTACCTATACAAGTTGCTGCTTATCGGAGACTCCGGC
GTGGGCAAATCTTGTATTCTAACACGGTTTGCAGATTCTACTTATGAGGA
CTGTCAAACAAGCACCATTGGCGTTGACTTTAAAATACGCACTATAGGGA
TCGATGACAAGAGAGTTAAGCTTCAGATATGGGATTCTGCTGGACAAGAA
CGCTTTCGCACAATTGCCGCAGCTTATTACAGAGGTGCCCATGGGGTAGG
TATCGTGTTCGATATAACTGATGAGAAGAGTTTTCAAAGCGTGGAAGGGT
CATGGATTGAAGAGATAGAGAACAACACAACTTCACCTGTTCGAACGTTA
CTAATCGGGAACAAATGCGATCTGAACGGTGAACGAGAAGTAAACAGGTG
TGAAGCTGAGGCCCTTGCACGAAAATACGGTATGAGCTACATCGAAACTT
CTGCGAAAACAGCAGAGAATGTGTTTGAGGCGTTTGTGACAATCTCCAAA
GAGATTTACGAAAGCAACAGCGTAAACGGTATAGTTTCCTTAGCTCAACA
AATGGATACAATACGAGTAACAGATGACATGCGACTAGGCCAAAAAGAGA
AGAGTTCTAAATGCGGGTGTTGA

protein sequence of Gcaud1280.t1

>Gcaud1280.t1 ID=Gcaud1280.t1|Name=Gcaud1280.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MSSGQAYSTLTKYDETTSSQGAKMTNIQVPAQASVEYHYLYKLLLIGDSG
VGKSCILTRFADSTYEDCQTSTIGVDFKIRTIGIDDKRVKLQIWDSAGQE
RFRTIAAAYYRGAHGVGIVFDITDEKSFQSVEGSWIEEIENNTTSPVRTL
LIGNKCDLNGEREVNRCEAEALARKYGMSYIETSAKTAENVFEAFVTISK
EIYESNSVNGIVSLAQQMDTIRVTDDMRLGQKEKSSKCGC*

mRNA from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1280.t1 ID=Gcaud1280.t1|Name=Gcaud1280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=824bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCAGGTCAGGCTTATAGCACCTTGACCAAGTATGATGAGACAAC
TAGTTCTCAAGGCGCGAAGATGACGAACATTCAAGTACCTGCTCAAGCCT
CGGTAGAGTACCATTACCTATACAAGTTGCTGCTTATCGGAGACTCCGGC
GTGGGCAAATCTTGTATTCTAACACGGTTTGCAGATTCTACTTATGAGGA
CTGTCAAACAAGCACCATTGGCGTTGACTTTAAAATACGCACTATAGGGA
TCGATGACAAGAGAGTTAAGCTTCAGATATGGGATTCTGCTGGACAAGAA
CGCTTTCGCACAATTGCCGCAGCTTATTACAGAGGTGCCCATGGGGTAGG
TATCGTGTTCGATATAACTGATGAGAAGAGTTTTCAAAGCGTGGAAGGGT
CATGGATTGAAGAGATAGAGAACAACACAACTTCACCTGTTCGAACGTTA
CTAATCGGGAACAAATGCGATCTGAACGGTGAACGAGAAGTAAACAGGTG
TGAAGCTGAGGCCCTTGCACGAAAATACGGTATGAGCTACATCGAAACTT
CTGCGAAAACAGCAGAGAATGTGTTTGAGGCGTTTGTGACAATCTCCAAA
GAGATTTACGAAAGCAAGTAAGTTCACTTAATATCTGTTCTTCCAAATGA
CTTCCGCTCGGAAAACTAACCAAGTGGATAACGACCTCTGGGCTCCTCCA
TTTGTATGAATAATGTAGCAGCGTAAACGGTATAGTTTCCTTAGCTCAAC
AAATGGATACAATACGAGTAACAGATGACATGCGACTAGGCCAAAAAGAG
AAGAGTTCTAAATGCGGGTGTTGA

Coding sequence (CDS) from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+

>Gcaud1280.t1 ID=Gcaud1280.t1|Name=Gcaud1280.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=723bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:21862..22685+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCAGGTCAGGCTTATAGCACCTTGACCAAGTATGATGAGACAAC
TAGTTCTCAAGGCGCGAAGATGACGAACATTCAAGTACCTGCTCAAGCCT
CGGTAGAGTACCATTACCTATACAAGTTGCTGCTTATCGGAGACTCCGGC
GTGGGCAAATCTTGTATTCTAACACGGTTTGCAGATTCTACTTATGAGGA
CTGTCAAACAAGCACCATTGGCGTTGACTTTAAAATACGCACTATAGGGA
TCGATGACAAGAGAGTTAAGCTTCAGATATGGGATTCTGCTGGACAAGAA
CGCTTTCGCACAATTGCCGCAGCTTATTACAGAGGTGCCCATGGGGTAGG
TATCGTGTTCGATATAACTGATGAGAAGAGTTTTCAAAGCGTGGAAGGGT
CATGGATTGAAGAGATAGAGAACAACACAACTTCACCTGTTCGAACGTTA
CTAATCGGGAACAAATGCGATCTGAACGGTGAACGAGAAGTAAACAGGTG
TGAAGCTGAGGCCCTTGCACGAAAATACGGTATGAGCTACATCGAAACTT
CTGCGAAAACAGCAGAGAATGTGTTTGAGGCGTTTGTGACAATCTCCAAA
GAGATTTACGAAAGCAACAGCGTAAACGGTATAGTTTCCTTAGCTCAACA
AATGGATACAATACGAGTAACAGATGACATGCGACTAGGCCAAAAAGAGA
AGAGTTCTAAATGCGGGTGTTGA