Gcaud1276.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1276.t1
Unique Name	Gcaud1276.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	461

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_468_length_24594_cov_4.796474	contig	NODE_468_length_24594_cov_4.796474:7772..9154 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra87757
PFAMs	Nop53
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14840
KEGG Pathway	ko05168,map05168
Evalue	1.02e-08
EggNOG OGs	KOG2823@1\|root,KOG2823@2759\|Eukaryota,3QBIB@4776\|Peronosporales
Description	Nop53 (60S ribosomal biogenesis)
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1276	Gcaud1276	Gracilaria caudata M_176_S67 male	gene	NODE_468_length_24594_cov_4.796474 7772..9154 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1276.t1.stop1	Gcaud1276.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_468_length_24594_cov_4.796474 7772..7774 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1276.t1.CDS1	Gcaud1276.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_468_length_24594_cov_4.796474 7772..9154 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1276.t1.exon1	Gcaud1276.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_468_length_24594_cov_4.796474 7772..9154 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1276.t1.start1	Gcaud1276.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_468_length_24594_cov_4.796474 9152..9154 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1276.t1	Gcaud1276.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_468_length_24594_cov_4.796474 7772..9154 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_468_length_24594_cov_4.796474:7772..9154-
coding sequence from alignment at NODE_468_length_24594_cov_4.796474:7772..9154-

mRNA sequence

>Gcaud1276.t1 ID=Gcaud1276.t1|Name=Gcaud1276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=461bp
MARTGTKRKRKERESRTAAEVEHGKRIAATERKLLGTSVTQDVASESIFT
IDRKGESKEALANQFRGQAVLQRRAAKRARRQAPKPRKSEAGVRTLDTGV
EGIKFVGKKKKVGVGLVEKQILAKRKFDKPEGHIGNRSAVVREMLQKKGE
KDDIWSTSDGLEGEEAELDLLEKTGIPARRKRLEEKIHSRHRSAQPIIHP
DSGMSVNPTHSDHQDMLGEAVASIVHKDDEKRWDEKKLSYDPAILLESTE
GEVADTGMKVDTNSSDSDSENEIGTDVAIMSQGAPERKTRAQRNKESRKR
IMAANIARKRADAKQAEDIENLAHIACQADEEADKLNGVAKQRLLEENPP
PPPGAYAPVLRRIAGEKVRNEKVCNPVALSTELSESMRNVKMPKANPLVR
DRFLSFERRGFIAPPKVLPKELRRMARDKLREERKERRRRKGRGSASNLT
FWRNGKRAVL*

spliced messenger RNA

>Gcaud1276.t1 ID=Gcaud1276.t1|Name=Gcaud1276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:7772..9154- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGAACCGGAACTAAGCGAAAGCGCAAGGAGCGTGAAAGCCGCAC
TGCAGCAGAAGTAGAACATGGAAAACGGATAGCAGCAACAGAACGGAAGC
TATTGGGTACCAGCGTAACCCAAGATGTGGCCAGTGAATCCATTTTCACG
ATTGATAGGAAAGGAGAATCAAAGGAAGCTTTGGCTAATCAGTTTCGAGG
TCAAGCCGTGCTCCAGAGAAGAGCAGCGAAACGAGCACGGCGCCAAGCCC
CGAAGCCAAGAAAGTCCGAAGCAGGGGTACGAACCTTAGACACTGGAGTG
GAAGGTATCAAATTCGTTGGCAAGAAAAAGAAAGTCGGTGTGGGCCTGGT
TGAGAAGCAGATTCTGGCCAAAAGGAAATTCGATAAGCCGGAAGGTCATA
TCGGAAACAGAAGTGCTGTCGTTCGCGAGATGTTACAGAAGAAGGGTGAA
AAAGATGATATATGGTCTACATCCGACGGTCTTGAAGGAGAAGAGGCTGA
ACTAGATTTGCTCGAAAAGACGGGAATCCCAGCGAGAAGAAAAAGACTAG
AAGAGAAGATCCATTCACGACACCGCTCCGCGCAGCCCATTATACACCCC
GACAGCGGTATGAGCGTAAACCCAACTCATTCTGATCATCAAGACATGCT
GGGCGAAGCAGTGGCAAGCATTGTGCACAAGGATGATGAGAAGCGTTGGG
ATGAAAAGAAATTGAGCTATGATCCAGCCATCCTGCTTGAGAGTACCGAG
GGCGAAGTTGCTGATACTGGAATGAAAGTAGATACTAACTCCAGCGATTC
AGATAGTGAAAATGAAATAGGAACCGATGTTGCAATCATGAGTCAAGGCG
CGCCCGAACGGAAGACTAGGGCCCAACGCAACAAAGAATCTCGAAAGCGT
ATCATGGCGGCTAATATCGCCAGAAAACGAGCTGATGCGAAGCAGGCTGA
AGATATTGAGAACTTAGCGCACATTGCGTGCCAGGCCGACGAGGAAGCAG
ATAAATTGAATGGAGTAGCGAAGCAGAGATTGTTAGAAGAGAATCCTCCG
CCGCCGCCGGGGGCATATGCGCCAGTATTACGTCGAATAGCTGGAGAAAA
GGTTCGAAATGAAAAGGTATGCAACCCTGTCGCTTTGAGCACAGAACTAT
CTGAAAGCATGCGAAACGTGAAGATGCCAAAAGCGAATCCGCTGGTTCGT
GATAGGTTCTTAAGTTTTGAGAGGAGAGGTTTTATAGCTCCTCCGAAGGT
GCTACCCAAGGAATTACGTAGAATGGCAAGGGACAAACTCCGGGAGGAAA
GGAAGGAGAGAAGGAGACGAAAGGGGCGAGGAAGCGCATCCAACCTTACG
TTTTGGAGGAATGGCAAAAGGGCAGTTCTTTAG

protein sequence of Gcaud1276.t1

>Gcaud1276.t1 ID=Gcaud1276.t1|Name=Gcaud1276.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=461bp
MARTGTKRKRKERESRTAAEVEHGKRIAATERKLLGTSVTQDVASESIFT
IDRKGESKEALANQFRGQAVLQRRAAKRARRQAPKPRKSEAGVRTLDTGV
EGIKFVGKKKKVGVGLVEKQILAKRKFDKPEGHIGNRSAVVREMLQKKGE
KDDIWSTSDGLEGEEAELDLLEKTGIPARRKRLEEKIHSRHRSAQPIIHP
DSGMSVNPTHSDHQDMLGEAVASIVHKDDEKRWDEKKLSYDPAILLESTE
GEVADTGMKVDTNSSDSDSENEIGTDVAIMSQGAPERKTRAQRNKESRKR
IMAANIARKRADAKQAEDIENLAHIACQADEEADKLNGVAKQRLLEENPP
PPPGAYAPVLRRIAGEKVRNEKVCNPVALSTELSESMRNVKMPKANPLVR
DRFLSFERRGFIAPPKVLPKELRRMARDKLREERKERRRRKGRGSASNLT
FWRNGKRAVL*

mRNA from alignment at NODE_468_length_24594_cov_4.796474:7772..9154-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1276.t1 ID=Gcaud1276.t1|Name=Gcaud1276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:7772..9154- (Gracilaria caudata M_176_S67 male)
ATGGCCAGAACCGGAACTAAGCGAAAGCGCAAGGAGCGTGAAAGCCGCAC
TGCAGCAGAAGTAGAACATGGAAAACGGATAGCAGCAACAGAACGGAAGC
TATTGGGTACCAGCGTAACCCAAGATGTGGCCAGTGAATCCATTTTCACG
ATTGATAGGAAAGGAGAATCAAAGGAAGCTTTGGCTAATCAGTTTCGAGG
TCAAGCCGTGCTCCAGAGAAGAGCAGCGAAACGAGCACGGCGCCAAGCCC
CGAAGCCAAGAAAGTCCGAAGCAGGGGTACGAACCTTAGACACTGGAGTG
GAAGGTATCAAATTCGTTGGCAAGAAAAAGAAAGTCGGTGTGGGCCTGGT
TGAGAAGCAGATTCTGGCCAAAAGGAAATTCGATAAGCCGGAAGGTCATA
TCGGAAACAGAAGTGCTGTCGTTCGCGAGATGTTACAGAAGAAGGGTGAA
AAAGATGATATATGGTCTACATCCGACGGTCTTGAAGGAGAAGAGGCTGA
ACTAGATTTGCTCGAAAAGACGGGAATCCCAGCGAGAAGAAAAAGACTAG
AAGAGAAGATCCATTCACGACACCGCTCCGCGCAGCCCATTATACACCCC
GACAGCGGTATGAGCGTAAACCCAACTCATTCTGATCATCAAGACATGCT
GGGCGAAGCAGTGGCAAGCATTGTGCACAAGGATGATGAGAAGCGTTGGG
ATGAAAAGAAATTGAGCTATGATCCAGCCATCCTGCTTGAGAGTACCGAG
GGCGAAGTTGCTGATACTGGAATGAAAGTAGATACTAACTCCAGCGATTC
AGATAGTGAAAATGAAATAGGAACCGATGTTGCAATCATGAGTCAAGGCG
CGCCCGAACGGAAGACTAGGGCCCAACGCAACAAAGAATCTCGAAAGCGT
ATCATGGCGGCTAATATCGCCAGAAAACGAGCTGATGCGAAGCAGGCTGA
AGATATTGAGAACTTAGCGCACATTGCGTGCCAGGCCGACGAGGAAGCAG
ATAAATTGAATGGAGTAGCGAAGCAGAGATTGTTAGAAGAGAATCCTCCG
CCGCCGCCGGGGGCATATGCGCCAGTATTACGTCGAATAGCTGGAGAAAA
GGTTCGAAATGAAAAGGTATGCAACCCTGTCGCTTTGAGCACAGAACTAT
CTGAAAGCATGCGAAACGTGAAGATGCCAAAAGCGAATCCGCTGGTTCGT
GATAGGTTCTTAAGTTTTGAGAGGAGAGGTTTTATAGCTCCTCCGAAGGT
GCTACCCAAGGAATTACGTAGAATGGCAAGGGACAAACTCCGGGAGGAAA
GGAAGGAGAGAAGGAGACGAAAGGGGCGAGGAAGCGCATCCAACCTTACG
TTTTGGAGGAATGGCAAAAGGGCAGTTCTTTAG

Coding sequence (CDS) from alignment at NODE_468_length_24594_cov_4.796474:7772..9154-

>Gcaud1276.t1 ID=Gcaud1276.t1|Name=Gcaud1276.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1383bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:7772..9154- (Gracilaria caudata M_176_S67 male)
ATGGCCAGAACCGGAACTAAGCGAAAGCGCAAGGAGCGTGAAAGCCGCAC
TGCAGCAGAAGTAGAACATGGAAAACGGATAGCAGCAACAGAACGGAAGC
TATTGGGTACCAGCGTAACCCAAGATGTGGCCAGTGAATCCATTTTCACG
ATTGATAGGAAAGGAGAATCAAAGGAAGCTTTGGCTAATCAGTTTCGAGG
TCAAGCCGTGCTCCAGAGAAGAGCAGCGAAACGAGCACGGCGCCAAGCCC
CGAAGCCAAGAAAGTCCGAAGCAGGGGTACGAACCTTAGACACTGGAGTG
GAAGGTATCAAATTCGTTGGCAAGAAAAAGAAAGTCGGTGTGGGCCTGGT
TGAGAAGCAGATTCTGGCCAAAAGGAAATTCGATAAGCCGGAAGGTCATA
TCGGAAACAGAAGTGCTGTCGTTCGCGAGATGTTACAGAAGAAGGGTGAA
AAAGATGATATATGGTCTACATCCGACGGTCTTGAAGGAGAAGAGGCTGA
ACTAGATTTGCTCGAAAAGACGGGAATCCCAGCGAGAAGAAAAAGACTAG
AAGAGAAGATCCATTCACGACACCGCTCCGCGCAGCCCATTATACACCCC
GACAGCGGTATGAGCGTAAACCCAACTCATTCTGATCATCAAGACATGCT
GGGCGAAGCAGTGGCAAGCATTGTGCACAAGGATGATGAGAAGCGTTGGG
ATGAAAAGAAATTGAGCTATGATCCAGCCATCCTGCTTGAGAGTACCGAG
GGCGAAGTTGCTGATACTGGAATGAAAGTAGATACTAACTCCAGCGATTC
AGATAGTGAAAATGAAATAGGAACCGATGTTGCAATCATGAGTCAAGGCG
CGCCCGAACGGAAGACTAGGGCCCAACGCAACAAAGAATCTCGAAAGCGT
ATCATGGCGGCTAATATCGCCAGAAAACGAGCTGATGCGAAGCAGGCTGA
AGATATTGAGAACTTAGCGCACATTGCGTGCCAGGCCGACGAGGAAGCAG
ATAAATTGAATGGAGTAGCGAAGCAGAGATTGTTAGAAGAGAATCCTCCG
CCGCCGCCGGGGGCATATGCGCCAGTATTACGTCGAATAGCTGGAGAAAA
GGTTCGAAATGAAAAGGTATGCAACCCTGTCGCTTTGAGCACAGAACTAT
CTGAAAGCATGCGAAACGTGAAGATGCCAAAAGCGAATCCGCTGGTTCGT
GATAGGTTCTTAAGTTTTGAGAGGAGAGGTTTTATAGCTCCTCCGAAGGT
GCTACCCAAGGAATTACGTAGAATGGCAAGGGACAAACTCCGGGAGGAAA
GGAAGGAGAGAAGGAGACGAAAGGGGCGAGGAAGCGCATCCAACCTTACG
TTTTGGAGGAATGGCAAAAGGGCAGTTCTTTAG