Gcaud1275.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1275.t1
Unique NameGcaud1275.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length62
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_468_length_24594_cov_4.796474contigNODE_468_length_24594_cov_4.796474:6120..6533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1275Gcaud1275Gracilaria caudata M_176_S67 malegeneNODE_468_length_24594_cov_4.796474 6120..6533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1275.t1Gcaud1275.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_468_length_24594_cov_4.796474 6120..6533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1275.t1.CDS1Gcaud1275.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 6120..6200 +
Gcaud1275.t1.CDS2Gcaud1275.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_468_length_24594_cov_4.796474 6431..6533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1275.t1.exon1Gcaud1275.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 6120..6200 +
Gcaud1275.t1.exon2Gcaud1275.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_468_length_24594_cov_4.796474 6431..6533 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1275.t1.intron1Gcaud1275.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_468_length_24594_cov_4.796474 6201..6430 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1275.t1.stop1Gcaud1275.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_468_length_24594_cov_4.796474 6531..6533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1275.t1 ID=Gcaud1275.t1|Name=Gcaud1275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=62bp
XEPNLLHIGPEKSHDVNTSWNSKNMVPKQVREIGCASRLQAHMRTTPTKM
IGSPLSPEKMF*
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spliced messenger RNA

>Gcaud1275.t1 ID=Gcaud1275.t1|Name=Gcaud1275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=184bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:6120..6533+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGAGCCGAATTTGTTGCACATCGGCCCGGAGAAATCCCACGATGTAAATA
CGAGTTGGAATTCCAAGAATATGGTTCCAAAACAAGTAAGGGAGATCGGA
TGTGCATCACGACTGCAAGCGCATATGCGTACCACTCCAACAAAAATGAT
TGGTTCGCCTTTGTCACCTGAGAAAATGTTTTAA
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protein sequence of Gcaud1275.t1

>Gcaud1275.t1 ID=Gcaud1275.t1|Name=Gcaud1275.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=62bp
XEPNLLHIGPEKSHDVNTSWNSKNMVPKQVREIGCASRLQAHMRTTPTKM
IGSPLSPEKMF*
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mRNA from alignment at NODE_468_length_24594_cov_4.796474:6120..6533+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1275.t1 ID=Gcaud1275.t1|Name=Gcaud1275.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:6120..6533+ (Gracilaria caudata M_176_S67 male)
AGAGCCGAATTTGTTGCACATCGGCCCGGAGAAATCCCACGATGTAAATA
CGAGTTGGAATTCCAAGAATATGGTTCCAAAGTAAGTACAAGTTGAAATT
CCAAAACTTACTCCTCTTGTGGGGTGAAGCTGCAGGGCTTCGTTTTCTCC
AATCATTCTTGAAAAGGCGGGCACCCTCAGAATTCGAAAAACCTTCTTCT
GTTACCTTCGTAGATACCAAAGAAAGAACTGGCGAGGAATCAGAAAATCC
CAAACACTGCCGAAGAAACGCAACACCTTGACTGACCCATAAATTCATAC
CTACGTACCAGACAAGTAAGGGAGATCGGATGTGCATCACGACTGCAAGC
GCATATGCGTACCACTCCAACAAAAATGATTGGTTCGCCTTTGTCACCTG
AGAAAATGTTTTAA
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Coding sequence (CDS) from alignment at NODE_468_length_24594_cov_4.796474:6120..6533+

>Gcaud1275.t1 ID=Gcaud1275.t1|Name=Gcaud1275.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=184bp|location=Sequence derived from alignment at NODE_468_length_24594_cov_4.796474:6120..6533+ (Gracilaria caudata M_176_S67 male)
AGAGCCGAATTTGTTGCACATCGGCCCGGAGAAATCCCACGATGTAAATA
CGAGTTGGAATTCCAAGAATATGGTTCCAAAACAAGTAAGGGAGATCGGA
TGTGCATCACGACTGCAAGCGCATATGCGTACCACTCCAACAAAAATGAT
TGGTTCGCCTTTGTCACCTGAGAAAATGTTTTAA
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