Gcaud1272.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1272.t1
Unique Name	Gcaud1272.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_413_length_26343_cov_4.745848	contig	NODE_413_length_26343_cov_4.745848:15121..16161 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1272	Gcaud1272	Gracilaria caudata M_176_S67 male	gene	NODE_413_length_26343_cov_4.745848 15121..16161 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1272.t1.stop1	Gcaud1272.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_413_length_26343_cov_4.745848 15121..15123 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1272.t1.CDS1	Gcaud1272.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_413_length_26343_cov_4.745848 15121..16161 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1272.t1.exon1	Gcaud1272.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_413_length_26343_cov_4.745848 15121..16161 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1272.t1.start1	Gcaud1272.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_413_length_26343_cov_4.745848 16159..16161 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1272.t1	Gcaud1272.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_413_length_26343_cov_4.745848 15121..16161 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_413_length_26343_cov_4.745848:15121..16161-
coding sequence from alignment at NODE_413_length_26343_cov_4.745848:15121..16161-

mRNA sequence

>Gcaud1272.t1 ID=Gcaud1272.t1|Name=Gcaud1272.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MVLINVKSQFVTLFISVVTALAEISFTAAVLSINSKREFRKLENGKPLYV
RKHQKIVSIVIGVCISVFVIIELAVGATIEDEVRKVPFTEPCVQVGINTG
RTFTSIEQPTRSYLAQLFCSRFRDSHLQVLLSNFSLSSTTVSCAEEAVYE
LHFRDRPRRPTHQAKLYCAMDEWGLQQCSFTSLTNSVFSFSYVLGEEEGQ
VNETEFFDVRLFFQPASQDVISNRLLKAVINDSALDVDAIISRVFLGSRS
STCTFFESRNATQVPVAIISVLLAIWLGSFVLFVCVACYGKKAFLDLSEP
LDWAKVILPAKGDNGTNVDNAKISAEIDSGTLRFSVQLLPKLGKNK*

spliced messenger RNA

>Gcaud1272.t1 ID=Gcaud1272.t1|Name=Gcaud1272.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:15121..16161- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTCATTAACGTCAAGTCTCAGTTTGTTACTCTTTTTATCAGTGT
CGTCACCGCGCTTGCGGAAATCTCCTTCACGGCTGCAGTGCTTTCAATTA
ATTCAAAACGTGAATTCCGTAAGCTGGAAAACGGCAAACCTCTCTATGTT
CGAAAGCATCAGAAAATAGTCTCTATTGTCATAGGTGTCTGTATCTCTGT
TTTTGTGATCATCGAACTCGCTGTTGGTGCTACTATTGAAGACGAAGTGC
GGAAGGTTCCGTTTACTGAACCATGCGTGCAGGTAGGAATCAACACGGGA
AGGACGTTTACCTCCATAGAGCAACCAACCCGGAGCTATTTGGCGCAACT
CTTTTGTTCTCGTTTCAGGGATTCCCATCTACAGGTTCTTTTAAGCAATT
TCAGTCTCAGTTCTACCACTGTCTCATGCGCGGAAGAAGCGGTATACGAG
CTTCACTTTCGTGATCGCCCGCGACGCCCTACGCATCAGGCAAAGCTTTA
TTGCGCAATGGATGAATGGGGTCTCCAGCAGTGTTCGTTTACGAGTCTAA
CGAACAGCGTTTTCAGTTTCTCGTATGTTCTGGGCGAGGAGGAAGGTCAG
GTGAATGAAACGGAGTTCTTTGATGTGAGACTGTTTTTCCAACCGGCATC
GCAGGATGTAATTAGCAATCGGTTACTGAAAGCAGTAATAAACGACAGTG
CTCTGGACGTGGACGCCATAATTTCCAGAGTGTTCTTAGGGTCTAGGTCG
TCAACATGCACGTTCTTCGAATCTCGGAATGCCACCCAAGTTCCTGTGGC
GATCATATCTGTGCTGCTAGCAATCTGGCTTGGTTCTTTTGTGCTTTTCG
TTTGCGTAGCATGCTATGGCAAGAAAGCTTTCCTTGACCTGAGCGAACCG
CTTGACTGGGCAAAGGTGATTTTGCCGGCCAAGGGCGACAATGGTACGAA
TGTTGATAATGCAAAGATATCAGCTGAAATTGACAGTGGCACTCTTCGTT
TCTCCGTGCAATTGCTGCCGAAGTTAGGGAAGAATAAATGA

protein sequence of Gcaud1272.t1

>Gcaud1272.t1 ID=Gcaud1272.t1|Name=Gcaud1272.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MVLINVKSQFVTLFISVVTALAEISFTAAVLSINSKREFRKLENGKPLYV
RKHQKIVSIVIGVCISVFVIIELAVGATIEDEVRKVPFTEPCVQVGINTG
RTFTSIEQPTRSYLAQLFCSRFRDSHLQVLLSNFSLSSTTVSCAEEAVYE
LHFRDRPRRPTHQAKLYCAMDEWGLQQCSFTSLTNSVFSFSYVLGEEEGQ
VNETEFFDVRLFFQPASQDVISNRLLKAVINDSALDVDAIISRVFLGSRS
STCTFFESRNATQVPVAIISVLLAIWLGSFVLFVCVACYGKKAFLDLSEP
LDWAKVILPAKGDNGTNVDNAKISAEIDSGTLRFSVQLLPKLGKNK*

mRNA from alignment at NODE_413_length_26343_cov_4.745848:15121..16161-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1272.t1 ID=Gcaud1272.t1|Name=Gcaud1272.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:15121..16161- (Gracilaria caudata M_176_S67 male)
ATGGTTCTCATTAACGTCAAGTCTCAGTTTGTTACTCTTTTTATCAGTGT
CGTCACCGCGCTTGCGGAAATCTCCTTCACGGCTGCAGTGCTTTCAATTA
ATTCAAAACGTGAATTCCGTAAGCTGGAAAACGGCAAACCTCTCTATGTT
CGAAAGCATCAGAAAATAGTCTCTATTGTCATAGGTGTCTGTATCTCTGT
TTTTGTGATCATCGAACTCGCTGTTGGTGCTACTATTGAAGACGAAGTGC
GGAAGGTTCCGTTTACTGAACCATGCGTGCAGGTAGGAATCAACACGGGA
AGGACGTTTACCTCCATAGAGCAACCAACCCGGAGCTATTTGGCGCAACT
CTTTTGTTCTCGTTTCAGGGATTCCCATCTACAGGTTCTTTTAAGCAATT
TCAGTCTCAGTTCTACCACTGTCTCATGCGCGGAAGAAGCGGTATACGAG
CTTCACTTTCGTGATCGCCCGCGACGCCCTACGCATCAGGCAAAGCTTTA
TTGCGCAATGGATGAATGGGGTCTCCAGCAGTGTTCGTTTACGAGTCTAA
CGAACAGCGTTTTCAGTTTCTCGTATGTTCTGGGCGAGGAGGAAGGTCAG
GTGAATGAAACGGAGTTCTTTGATGTGAGACTGTTTTTCCAACCGGCATC
GCAGGATGTAATTAGCAATCGGTTACTGAAAGCAGTAATAAACGACAGTG
CTCTGGACGTGGACGCCATAATTTCCAGAGTGTTCTTAGGGTCTAGGTCG
TCAACATGCACGTTCTTCGAATCTCGGAATGCCACCCAAGTTCCTGTGGC
GATCATATCTGTGCTGCTAGCAATCTGGCTTGGTTCTTTTGTGCTTTTCG
TTTGCGTAGCATGCTATGGCAAGAAAGCTTTCCTTGACCTGAGCGAACCG
CTTGACTGGGCAAAGGTGATTTTGCCGGCCAAGGGCGACAATGGTACGAA
TGTTGATAATGCAAAGATATCAGCTGAAATTGACAGTGGCACTCTTCGTT
TCTCCGTGCAATTGCTGCCGAAGTTAGGGAAGAATAAATGA

Coding sequence (CDS) from alignment at NODE_413_length_26343_cov_4.745848:15121..16161-

>Gcaud1272.t1 ID=Gcaud1272.t1|Name=Gcaud1272.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:15121..16161- (Gracilaria caudata M_176_S67 male)
ATGGTTCTCATTAACGTCAAGTCTCAGTTTGTTACTCTTTTTATCAGTGT
CGTCACCGCGCTTGCGGAAATCTCCTTCACGGCTGCAGTGCTTTCAATTA
ATTCAAAACGTGAATTCCGTAAGCTGGAAAACGGCAAACCTCTCTATGTT
CGAAAGCATCAGAAAATAGTCTCTATTGTCATAGGTGTCTGTATCTCTGT
TTTTGTGATCATCGAACTCGCTGTTGGTGCTACTATTGAAGACGAAGTGC
GGAAGGTTCCGTTTACTGAACCATGCGTGCAGGTAGGAATCAACACGGGA
AGGACGTTTACCTCCATAGAGCAACCAACCCGGAGCTATTTGGCGCAACT
CTTTTGTTCTCGTTTCAGGGATTCCCATCTACAGGTTCTTTTAAGCAATT
TCAGTCTCAGTTCTACCACTGTCTCATGCGCGGAAGAAGCGGTATACGAG
CTTCACTTTCGTGATCGCCCGCGACGCCCTACGCATCAGGCAAAGCTTTA
TTGCGCAATGGATGAATGGGGTCTCCAGCAGTGTTCGTTTACGAGTCTAA
CGAACAGCGTTTTCAGTTTCTCGTATGTTCTGGGCGAGGAGGAAGGTCAG
GTGAATGAAACGGAGTTCTTTGATGTGAGACTGTTTTTCCAACCGGCATC
GCAGGATGTAATTAGCAATCGGTTACTGAAAGCAGTAATAAACGACAGTG
CTCTGGACGTGGACGCCATAATTTCCAGAGTGTTCTTAGGGTCTAGGTCG
TCAACATGCACGTTCTTCGAATCTCGGAATGCCACCCAAGTTCCTGTGGC
GATCATATCTGTGCTGCTAGCAATCTGGCTTGGTTCTTTTGTGCTTTTCG
TTTGCGTAGCATGCTATGGCAAGAAAGCTTTCCTTGACCTGAGCGAACCG
CTTGACTGGGCAAAGGTGATTTTGCCGGCCAAGGGCGACAATGGTACGAA
TGTTGATAATGCAAAGATATCAGCTGAAATTGACAGTGGCACTCTTCGTT
TCTCCGTGCAATTGCTGCCGAAGTTAGGGAAGAATAAATGA