Gcaud1269.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1269.t1
Unique NameGcaud1269.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_413_length_26343_cov_4.745848contigNODE_413_length_26343_cov_4.745848:4846..6000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1269Gcaud1269Gracilaria caudata M_176_S67 malegeneNODE_413_length_26343_cov_4.745848 4846..6000 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1269.t1.stop1Gcaud1269.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_413_length_26343_cov_4.745848 4846..4848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1269.t1.CDS1Gcaud1269.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_413_length_26343_cov_4.745848 4846..6000 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1269.t1.exon1Gcaud1269.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_413_length_26343_cov_4.745848 4846..6000 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1269.t1.start1Gcaud1269.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_413_length_26343_cov_4.745848 5998..6000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1269.t1Gcaud1269.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_413_length_26343_cov_4.745848 4846..6000 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1269.t1 ID=Gcaud1269.t1|Name=Gcaud1269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp
MQILQPLRPLPRKEIHPEKLGRSNPSLADSEVGKMVVINVKSQFVTLFIT
IVTLLAELSFTAAVLSINSHREYRKLTKGKPVYVRKHQKTISIVTTACIA
VFAVIELAVGGSIEDEVRKVPFTEPCVQVGINTGQVFTSFEQPTRSYLAQ
AFCYRYKDYQLQVRLSNFSLSSTAVSCTEEAVFELHYRDRPQRPTQHAKR
YCGVNGWGLEFCSFTILSNGVFSFSPIEYEQDGAVNETQFLEVRLFFQPE
SQDVISNRLLKAAVNESAAETDNLLSKLFLGSMSSTCTFFKPQNATQVPV
AIMSVLLAIWFGSFVLFFCVACYGKNTFLDLSEPLDWAKVMLPSKGNNDM
NVGNAMVSAEVEGGTRRFFVQLLPKVRKKKWWQI*
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spliced messenger RNA

>Gcaud1269.t1 ID=Gcaud1269.t1|Name=Gcaud1269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:4846..6000- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATTTTGCAACCACTGCGTCCTCTTCCAAGAAAAGAGATTCACCC
AGAAAAGTTGGGACGCTCAAATCCATCTCTCGCGGACAGTGAGGTCGGCA
AAATGGTTGTCATTAACGTCAAGTCTCAATTTGTTACACTCTTCATCACT
ATCGTTACTCTTCTCGCCGAACTCTCTTTCACTGCTGCTGTGCTTTCAAT
CAATTCACATCGTGAATACCGTAAACTGACGAAAGGCAAACCTGTTTACG
TTCGCAAGCACCAGAAAACAATTTCTATTGTCACAACCGCCTGTATCGCT
GTTTTTGCGGTCATCGAGCTCGCCGTTGGTGGTAGTATTGAAGACGAGGT
GCGGAAGGTTCCTTTTACTGAACCATGTGTGCAGGTAGGAATTAATACCG
GTCAGGTGTTTACCTCCTTTGAACAACCAACCAGAAGCTATCTGGCGCAA
GCCTTTTGTTATCGGTACAAGGATTACCAACTCCAAGTTCGTTTGAGCAA
TTTCAGTCTCAGTTCTACCGCTGTCTCATGCACTGAAGAAGCAGTATTCG
AGCTTCACTATCGTGATCGCCCGCAACGCCCTACGCAACATGCAAAGCGA
TATTGCGGCGTGAATGGATGGGGTCTAGAGTTCTGCTCATTTACAATACT
ATCGAACGGCGTTTTCAGTTTCTCCCCTATTGAGTATGAGCAGGATGGCG
CGGTGAATGAAACGCAGTTCCTTGAAGTGAGGCTCTTTTTCCAGCCCGAA
TCGCAGGATGTAATTAGCAATCGTTTGCTGAAAGCAGCTGTAAACGAGAG
TGCAGCGGAGACGGACAATTTGCTTTCTAAACTGTTCCTAGGCTCTATGT
CGTCAACTTGTACGTTTTTCAAACCTCAGAATGCCACCCAAGTTCCTGTG
GCTATCATGTCTGTGTTGCTAGCAATCTGGTTTGGCTCTTTTGTGCTTTT
CTTTTGCGTAGCATGCTACGGCAAGAACACTTTCCTTGACTTGAGCGAAC
CGCTTGACTGGGCAAAGGTGATGTTGCCTTCCAAAGGCAACAATGACATG
AATGTTGGTAATGCAATGGTATCAGCTGAAGTTGAGGGTGGCACTCGTCG
TTTCTTCGTGCAATTGCTGCCCAAAGTAAGGAAGAAGAAATGGTGGCAGA
TATAA
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protein sequence of Gcaud1269.t1

>Gcaud1269.t1 ID=Gcaud1269.t1|Name=Gcaud1269.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=385bp
MQILQPLRPLPRKEIHPEKLGRSNPSLADSEVGKMVVINVKSQFVTLFIT
IVTLLAELSFTAAVLSINSHREYRKLTKGKPVYVRKHQKTISIVTTACIA
VFAVIELAVGGSIEDEVRKVPFTEPCVQVGINTGQVFTSFEQPTRSYLAQ
AFCYRYKDYQLQVRLSNFSLSSTAVSCTEEAVFELHYRDRPQRPTQHAKR
YCGVNGWGLEFCSFTILSNGVFSFSPIEYEQDGAVNETQFLEVRLFFQPE
SQDVISNRLLKAAVNESAAETDNLLSKLFLGSMSSTCTFFKPQNATQVPV
AIMSVLLAIWFGSFVLFFCVACYGKNTFLDLSEPLDWAKVMLPSKGNNDM
NVGNAMVSAEVEGGTRRFFVQLLPKVRKKKWWQI*
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mRNA from alignment at NODE_413_length_26343_cov_4.745848:4846..6000-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1269.t1 ID=Gcaud1269.t1|Name=Gcaud1269.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:4846..6000- (Gracilaria caudata M_176_S67 male)
ATGCAAATTTTGCAACCACTGCGTCCTCTTCCAAGAAAAGAGATTCACCC
AGAAAAGTTGGGACGCTCAAATCCATCTCTCGCGGACAGTGAGGTCGGCA
AAATGGTTGTCATTAACGTCAAGTCTCAATTTGTTACACTCTTCATCACT
ATCGTTACTCTTCTCGCCGAACTCTCTTTCACTGCTGCTGTGCTTTCAAT
CAATTCACATCGTGAATACCGTAAACTGACGAAAGGCAAACCTGTTTACG
TTCGCAAGCACCAGAAAACAATTTCTATTGTCACAACCGCCTGTATCGCT
GTTTTTGCGGTCATCGAGCTCGCCGTTGGTGGTAGTATTGAAGACGAGGT
GCGGAAGGTTCCTTTTACTGAACCATGTGTGCAGGTAGGAATTAATACCG
GTCAGGTGTTTACCTCCTTTGAACAACCAACCAGAAGCTATCTGGCGCAA
GCCTTTTGTTATCGGTACAAGGATTACCAACTCCAAGTTCGTTTGAGCAA
TTTCAGTCTCAGTTCTACCGCTGTCTCATGCACTGAAGAAGCAGTATTCG
AGCTTCACTATCGTGATCGCCCGCAACGCCCTACGCAACATGCAAAGCGA
TATTGCGGCGTGAATGGATGGGGTCTAGAGTTCTGCTCATTTACAATACT
ATCGAACGGCGTTTTCAGTTTCTCCCCTATTGAGTATGAGCAGGATGGCG
CGGTGAATGAAACGCAGTTCCTTGAAGTGAGGCTCTTTTTCCAGCCCGAA
TCGCAGGATGTAATTAGCAATCGTTTGCTGAAAGCAGCTGTAAACGAGAG
TGCAGCGGAGACGGACAATTTGCTTTCTAAACTGTTCCTAGGCTCTATGT
CGTCAACTTGTACGTTTTTCAAACCTCAGAATGCCACCCAAGTTCCTGTG
GCTATCATGTCTGTGTTGCTAGCAATCTGGTTTGGCTCTTTTGTGCTTTT
CTTTTGCGTAGCATGCTACGGCAAGAACACTTTCCTTGACTTGAGCGAAC
CGCTTGACTGGGCAAAGGTGATGTTGCCTTCCAAAGGCAACAATGACATG
AATGTTGGTAATGCAATGGTATCAGCTGAAGTTGAGGGTGGCACTCGTCG
TTTCTTCGTGCAATTGCTGCCCAAAGTAAGGAAGAAGAAATGGTGGCAGA
TATAA
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Coding sequence (CDS) from alignment at NODE_413_length_26343_cov_4.745848:4846..6000-

>Gcaud1269.t1 ID=Gcaud1269.t1|Name=Gcaud1269.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1155bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:4846..6000- (Gracilaria caudata M_176_S67 male)
ATGCAAATTTTGCAACCACTGCGTCCTCTTCCAAGAAAAGAGATTCACCC
AGAAAAGTTGGGACGCTCAAATCCATCTCTCGCGGACAGTGAGGTCGGCA
AAATGGTTGTCATTAACGTCAAGTCTCAATTTGTTACACTCTTCATCACT
ATCGTTACTCTTCTCGCCGAACTCTCTTTCACTGCTGCTGTGCTTTCAAT
CAATTCACATCGTGAATACCGTAAACTGACGAAAGGCAAACCTGTTTACG
TTCGCAAGCACCAGAAAACAATTTCTATTGTCACAACCGCCTGTATCGCT
GTTTTTGCGGTCATCGAGCTCGCCGTTGGTGGTAGTATTGAAGACGAGGT
GCGGAAGGTTCCTTTTACTGAACCATGTGTGCAGGTAGGAATTAATACCG
GTCAGGTGTTTACCTCCTTTGAACAACCAACCAGAAGCTATCTGGCGCAA
GCCTTTTGTTATCGGTACAAGGATTACCAACTCCAAGTTCGTTTGAGCAA
TTTCAGTCTCAGTTCTACCGCTGTCTCATGCACTGAAGAAGCAGTATTCG
AGCTTCACTATCGTGATCGCCCGCAACGCCCTACGCAACATGCAAAGCGA
TATTGCGGCGTGAATGGATGGGGTCTAGAGTTCTGCTCATTTACAATACT
ATCGAACGGCGTTTTCAGTTTCTCCCCTATTGAGTATGAGCAGGATGGCG
CGGTGAATGAAACGCAGTTCCTTGAAGTGAGGCTCTTTTTCCAGCCCGAA
TCGCAGGATGTAATTAGCAATCGTTTGCTGAAAGCAGCTGTAAACGAGAG
TGCAGCGGAGACGGACAATTTGCTTTCTAAACTGTTCCTAGGCTCTATGT
CGTCAACTTGTACGTTTTTCAAACCTCAGAATGCCACCCAAGTTCCTGTG
GCTATCATGTCTGTGTTGCTAGCAATCTGGTTTGGCTCTTTTGTGCTTTT
CTTTTGCGTAGCATGCTACGGCAAGAACACTTTCCTTGACTTGAGCGAAC
CGCTTGACTGGGCAAAGGTGATGTTGCCTTCCAAAGGCAACAATGACATG
AATGTTGGTAATGCAATGGTATCAGCTGAAGTTGAGGGTGGCACTCGTCG
TTTCTTCGTGCAATTGCTGCCCAAAGTAAGGAAGAAGAAATGGTGGCAGA
TATAA
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